prot_P-canaliculata_contig107358.970.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-canaliculata_contig107358.970.1
Unique Nameprot_P-canaliculata_contig107358.970.1
Typepolypeptide
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length206
Homology
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BLAST of mRNA_P-canaliculata_contig107358.970.1 vs. uniprot
Match: A0A7X0H7W2_9BACT (Tetratricopeptide (TPR) repeat protein n=2 Tax=Algisphaera agarilytica TaxID=1385975 RepID=A0A7X0H7W2_9BACT)

HSP 1 Score: 191 bits (486), Expect = 3.810e-58
Identity = 95/183 (51.91%), Postives = 125/183 (68.31%), Query Frame = 0 
Query:   24 CANYVSYRADGFKHMEAGDTEAAVESFKQSVEARPTDFQAHYWLGVNFLKEGDAISTQAPLEQALALRPNDPQWRPRIADALADSYYQQGPGQVERLYTFLDNMVVTYGYQTGDYTRKARFLGQLGDGDGQKLALDKAAYFAPAGDLAPYLALADFYRGFNNVPAEIQALKYGYHTDPSSEVV 206
            C N V YR  G+      D   A E F+ +V+ +P+D+++ Y+LGV  L+    I  Q PLEQALALRP+DP+W PRIAD+LA++Y+QQ   + E LY FLDNM+  Y   + D+ RKA+++G LGD DGQK AL KAAYFAP GD  PYLA+ADFY   N+ P  IQAL+YGY+ D +S+ V
Sbjct:   21 CKNNVVYRELGYDSYRERDYITAAEHFQAAVDKKPSDYRSQYYLGVTMLQLDKPIPAQTPLEQALALRPDDPEWTPRIADSLAEAYFQQE--RYETLYGFLDNMIQNYNQSSVDFLRKAKYMGLLGDADGQKTALQKAAYFAPEGDTTPYLAIADFYISVNDTPNAIQALRYGYYVDSTSDEV 201
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BLAST of mRNA_P-canaliculata_contig107358.970.1 vs. uniprot
Match: A0A2D5Z8C7_9BACT (Uncharacterized protein n=1 Tax=Phycisphaeraceae bacterium TaxID=2026777 RepID=A0A2D5Z8C7_9BACT)

HSP 1 Score: 105 bits (263), Expect = 1.460e-24
Identity = 67/173 (38.73%), Postives = 99/173 (57.23%), Query Frame = 0 
Query:   30 YRADGFKHMEAGDTEAAVESFKQSVEARPTDFQAHYWLGVNFLKEGDAISTQAPLEQALALRPNDPQWRPRIADALADSYYQQGPGQVERLYTFLDNMVVTYGYQTGDYTRKARFLGQLGDGDGQKLALDKAAYFAPAGDLAPYLALADFYRGFNNVPAEIQALKYGYHTDPS 202
            +R  G   + A D + A + F ++V   PTD++AH+ LG+  L++  A   +   E+AL++  +DP + P I D LA+S  +Q   + ERL   L +  V YG  + DY R+ R+L ++ D DG  LA  KAA FAP GD  PYL +AD Y   N+    I+AL+  Y TDP+
Sbjct:   35 WRRQGHDAVRAKDLQTAEDRFGRAVARNPTDWRAHFHLGLIHLEQDRATEAEQSFERALSVC-SDPNYVPAIIDGLAESLARQQ--RAERLAEVLRDACVRYG-TSYDYLRQGRYLARIHDVDGANLAFRKAARFAP-GDPVPYLEMADLYESINDRGRAIEALRRAYLTDPA 202
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig107358.970.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7X0H7W2_9BACT3.810e-5851.91Tetratricopeptide (TPR) repeat protein n=2 Tax=Alg... [more]
A0A2D5Z8C7_9BACT1.460e-2438.73Uncharacterized protein n=1 Tax=Phycisphaeraceae b... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 29..205
e-value: 3.0E-13
score: 52.0
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 34..111
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..24
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 10..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 20..24
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 25..206
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..9
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..24
score: 6.0
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..25
score: 0.578
IPR013026Tetratricopeptide repeat-containing domainPROSITEPS50293TPR_REGIONcoord: 27..94
score: 13.741
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 61..94
score: 7.051
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 27..60
score: 8.909

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig107358contigP-canaliculata_contig107358:304..921 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig107358.970.1mRNA_P-canaliculata_contig107358.970.1Pelvetia canaliculata dioeciousmRNAP-canaliculata_contig107358 304..921 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-canaliculata_contig107358.970.1 ID=prot_P-canaliculata_contig107358.970.1|Name=mRNA_P-canaliculata_contig107358.970.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=206bp
MKPLRPLKPIATLTLMAALGTAGCANYVSYRADGFKHMEAGDTEAAVESF
KQSVEARPTDFQAHYWLGVNFLKEGDAISTQAPLEQALALRPNDPQWRPR
IADALADSYYQQGPGQVERLYTFLDNMVVTYGYQTGDYTRKARFLGQLGD
GDGQKLALDKAAYFAPAGDLAPYLALADFYRGFNNVPAEIQALKYGYHTD
PSSEVV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR013026TPR-contain_dom
IPR019734TPR_repeat