mRNA_P-canaliculata_contig107358.970.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig107358.970.1
Unique NamemRNA_P-canaliculata_contig107358.970.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig107358.970.1 vs. uniprot
Match: A0A7X0H7W2_9BACT (Tetratricopeptide (TPR) repeat protein n=2 Tax=Algisphaera agarilytica TaxID=1385975 RepID=A0A7X0H7W2_9BACT)

HSP 1 Score: 191 bits (486), Expect = 3.810e-58
Identity = 95/183 (51.91%), Postives = 125/183 (68.31%), Query Frame = 1 
Query:   70 CANYVSYRADGFKHMEAGDTEAAVESFKQSVEARPTDFQAHYWLGVNFLKEGDAISTQAPLEQALALRPNDPQWRPRIADALADSYYQQGPGQVERLYTFLDNMVVTYGYQTGDYTRKARFLGQLGDGDGQKLALDKAAYFAPAGDLAPYLALADFYRGFNNVPAEIQALKYGYHTDPSSEVV 618
            C N V YR  G+      D   A E F+ +V+ +P+D+++ Y+LGV  L+    I  Q PLEQALALRP+DP+W PRIAD+LA++Y+QQ   + E LY FLDNM+  Y   + D+ RKA+++G LGD DGQK AL KAAYFAP GD  PYLA+ADFY   N+ P  IQAL+YGY+ D +S+ V
Sbjct:   21 CKNNVVYRELGYDSYRERDYITAAEHFQAAVDKKPSDYRSQYYLGVTMLQLDKPIPAQTPLEQALALRPDDPEWTPRIADSLAEAYFQQE--RYETLYGFLDNMIQNYNQSSVDFLRKAKYMGLLGDADGQKTALQKAAYFAPEGDTTPYLAIADFYISVNDTPNAIQALRYGYYVDSTSDEV 201
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BLAST of mRNA_P-canaliculata_contig107358.970.1 vs. uniprot
Match: A0A2D5Z8C7_9BACT (Uncharacterized protein n=1 Tax=Phycisphaeraceae bacterium TaxID=2026777 RepID=A0A2D5Z8C7_9BACT)

HSP 1 Score: 105 bits (263), Expect = 1.460e-24
Identity = 67/173 (38.73%), Postives = 99/173 (57.23%), Query Frame = 1 
Query:   88 YRADGFKHMEAGDTEAAVESFKQSVEARPTDFQAHYWLGVNFLKEGDAISTQAPLEQALALRPNDPQWRPRIADALADSYYQQGPGQVERLYTFLDNMVVTYGYQTGDYTRKARFLGQLGDGDGQKLALDKAAYFAPAGDLAPYLALADFYRGFNNVPAEIQALKYGYHTDPS 606
            +R  G   + A D + A + F ++V   PTD++AH+ LG+  L++  A   +   E+AL++  +DP + P I D LA+S  +Q   + ERL   L +  V YG  + DY R+ R+L ++ D DG  LA  KAA FAP GD  PYL +AD Y   N+    I+AL+  Y TDP+
Sbjct:   35 WRRQGHDAVRAKDLQTAEDRFGRAVARNPTDWRAHFHLGLIHLEQDRATEAEQSFERALSVC-SDPNYVPAIIDGLAESLARQQ--RAERLAEVLRDACVRYG-TSYDYLRQGRYLARIHDVDGANLAFRKAARFAP-GDPVPYLEMADLYESINDRGRAIEALRRAYLTDPA 202
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig107358.970.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7X0H7W2_9BACT3.810e-5851.91Tetratricopeptide (TPR) repeat protein n=2 Tax=Alg... [more]
A0A2D5Z8C7_9BACT1.460e-2438.73Uncharacterized protein n=1 Tax=Phycisphaeraceae b... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig107358contigP-canaliculata_contig107358:304..921 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size618
Cds size618
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815642.924543-CDS-P-canaliculata_contig107358:303..9211622815642.924543-CDS-P-canaliculata_contig107358:303..921Pelvetia canaliculata dioeciousCDSP-canaliculata_contig107358 304..921 +
1693494182.8353548-CDS-P-canaliculata_contig107358:303..9211693494182.8353548-CDS-P-canaliculata_contig107358:303..921Pelvetia canaliculata dioeciousCDSP-canaliculata_contig107358 304..921 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig107358.970.1prot_P-canaliculata_contig107358.970.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig107358 304..921 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig107358.970.1

>prot_P-canaliculata_contig107358.970.1 ID=prot_P-canaliculata_contig107358.970.1|Name=mRNA_P-canaliculata_contig107358.970.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=206bp
MKPLRPLKPIATLTLMAALGTAGCANYVSYRADGFKHMEAGDTEAAVESF
KQSVEARPTDFQAHYWLGVNFLKEGDAISTQAPLEQALALRPNDPQWRPR
IADALADSYYQQGPGQVERLYTFLDNMVVTYGYQTGDYTRKARFLGQLGD
GDGQKLALDKAAYFAPAGDLAPYLALADFYRGFNNVPAEIQALKYGYHTD
PSSEVV
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mRNA from alignment at P-canaliculata_contig107358:304..921+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig107358.970.1 ID=mRNA_P-canaliculata_contig107358.970.1|Name=mRNA_P-canaliculata_contig107358.970.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=618bp|location=Sequence derived from alignment at P-canaliculata_contig107358:304..921+ (Pelvetia canaliculata dioecious)
ATGAAGCCTCTTCGACCCCTGAAGCCGATCGCGACGTTGACCCTGATGGC
GGCCCTGGGGACCGCGGGCTGTGCGAATTACGTGTCGTACCGGGCGGATG
GTTTCAAGCACATGGAGGCGGGGGACACGGAGGCGGCGGTCGAGAGCTTC
AAGCAGTCGGTGGAGGCCCGGCCCACGGATTTTCAGGCGCACTACTGGCT
GGGGGTGAACTTTCTGAAGGAGGGCGACGCGATCTCGACCCAGGCGCCCC
TGGAGCAGGCGCTGGCCCTGCGGCCCAATGATCCGCAGTGGCGGCCGCGG
ATCGCCGATGCCCTGGCCGACAGCTACTACCAGCAGGGCCCCGGGCAGGT
GGAGAGGCTCTACACCTTTCTGGACAACATGGTGGTGACCTACGGCTACC
AGACCGGGGACTACACGCGTAAGGCCCGGTTCCTCGGACAGCTGGGGGAC
GGGGACGGGCAAAAGTTGGCGCTCGACAAGGCGGCTTATTTTGCGCCCGC
GGGTGACCTCGCTCCGTACCTGGCGCTGGCGGACTTTTACCGGGGTTTTA
ACAACGTGCCGGCGGAAATTCAGGCGCTGAAATACGGCTACCACACGGAT
CCCAGCTCGGAGGTGGTG
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Coding sequence (CDS) from alignment at P-canaliculata_contig107358:304..921+

>mRNA_P-canaliculata_contig107358.970.1 ID=mRNA_P-canaliculata_contig107358.970.1|Name=mRNA_P-canaliculata_contig107358.970.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1236bp|location=Sequence derived from alignment at P-canaliculata_contig107358:304..921+ (Pelvetia canaliculata dioecious)
ATGAAGCCTCTTCGACCCCTGAAGCCGATCGCGACGTTGACCCTGATGGC
GGCCCTGGGGACCGCGGGCTGTGCGAATTACGTGTCGTACCGGGCGGATG
GTTTCAAGCACATGGAGGCGGGGGACACGGAGGCGGCGGTCGAGAGCTTC
AAGCAGTCGGTGGAGGCCCGGCCCACGGATTTTCAGGCGCACTACTGGCT
GGGGGTGAACTTTCTGAAGGAGGGCGACGCGATCTCGACCCAGGCGCCCC
TGGAGCAGGCGCTGGCCCTGCGGCCCAATGATCCGCAGTGGCGGCCGCGG
ATCGCCGATGCCCTGGCCGACAGCTACTACCAGCAGGGCCCCGGGCAGGT
GGAGAGGCTCTACACCTTTCTGGACAACATGGTGGTGACCTACGGCTACC
AGACCGGGGACTACACGCGTAAGGCCCGGTTCCTCGGACAGCTGGGGGAC
GGGGACGGGCAAAAGTTGGCGCTCGACAAGGCGGCTTATTTTGCGCCCGC
GGGTGACCTCGCTCCGTACCTGGCGCTGGCGGACTTTTACCGGGGTTTTA
ACAACGTGCCGGCGGAAATTCAGGCGCTGAAATACGGCTACCACACGGAT
CCCAGCTCGGAGGTGGTGATGAAGCCTCTTCGACCCCTGAAGCCGATCGC
GACGTTGACCCTGATGGCGGCCCTGGGGACCGCGGGCTGTGCGAATTACG
TGTCGTACCGGGCGGATGGTTTCAAGCACATGGAGGCGGGGGACACGGAG
GCGGCGGTCGAGAGCTTCAAGCAGTCGGTGGAGGCCCGGCCCACGGATTT
TCAGGCGCACTACTGGCTGGGGGTGAACTTTCTGAAGGAGGGCGACGCGA
TCTCGACCCAGGCGCCCCTGGAGCAGGCGCTGGCCCTGCGGCCCAATGAT
CCGCAGTGGCGGCCGCGGATCGCCGATGCCCTGGCCGACAGCTACTACCA
GCAGGGCCCCGGGCAGGTGGAGAGGCTCTACACCTTTCTGGACAACATGG
TGGTGACCTACGGCTACCAGACCGGGGACTACACGCGTAAGGCCCGGTTC
CTCGGACAGCTGGGGGACGGGGACGGGCAAAAGTTGGCGCTCGACAAGGC
GGCTTATTTTGCGCCCGCGGGTGACCTCGCTCCGTACCTGGCGCTGGCGG
ACTTTTACCGGGGTTTTAACAACGTGCCGGCGGAAATTCAGGCGCTGAAA
TACGGCTACCACACGGATCCCAGCTCGGAGGTGGTG
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