prot_P-canaliculata_contig10491.667.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_P-canaliculata_contig10491.667.1
Unique Name	prot_P-canaliculata_contig10491.667.1
Type	polypeptide
Organism	Pelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length	114

Homology

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BLAST of mRNA_P-canaliculata_contig10491.667.1 vs. uniprot
Match: D8LQX3_ECTSI (AP complex subunit sigma n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQX3_ECTSI)

HSP 1 Score: 215 bits (548), Expect = 2.710e-70
Identity = 107/110 (97.27%), Postives = 109/110 (99.09%), Query Frame = 0

Query:    2 IRFLLLQNRQGKTRLSKWWIPLHDEKEKVRIENEVHRLVVSRDRKYTNFVEFGTYKLIYRRYAGLFFTFGMDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNKA 111
            IRFLLLQNRQGKTRLSKWWIPLHDEKEKVRIENEVHRLVV+RDRKYTNFVE+GTYKLIYRRYAGLFFTFGMDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNK 
Sbjct:    2 IRFLLLQNRQGKTRLSKWWIPLHDEKEKVRIENEVHRLVVTRDRKYTNFVEYGTYKLIYRRYAGLFFTFGMDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNKV 111

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BLAST of mRNA_P-canaliculata_contig10491.667.1 vs. uniprot
Match: A0A835YZE0_9STRA (AP complex subunit sigma n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZE0_9STRA)

HSP 1 Score: 193 bits (491), Expect = 1.320e-61
Identity = 95/110 (86.36%), Postives = 106/110 (96.36%), Query Frame = 0

Query:    2 IRFLLLQNRQGKTRLSKWWIPLHDEKEKVRIENEVHRLVVSRDRKYTNFVEFGTYKLIYRRYAGLFFTFGMDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNKA 111
            IRFLLLQNRQGKTRLSKW+IPL+DE+EK +IEN+VHRLVVSRDRKYTNF+E+ +YK+IYRRYAGLFFT G+DVNDNELLALETVHLFVELL+SYFSNVCELDIVFNFNK 
Sbjct:    2 IRFLLLQNRQGKTRLSKWYIPLYDEQEKNKIENDVHRLVVSRDRKYTNFIEYQSYKIIYRRYAGLFFTLGVDVNDNELLALETVHLFVELLDSYFSNVCELDIVFNFNKV 111

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BLAST of mRNA_P-canaliculata_contig10491.667.1 vs. uniprot
Match: A0A7S2CS13_9STRA (AP complex subunit sigma n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CS13_9STRA)

HSP 1 Score: 172 bits (437), Expect = 2.600e-53
Identity = 84/110 (76.36%), Postives = 96/110 (87.27%), Query Frame = 0

Query:    2 IRFLLLQNRQGKTRLSKWWIPLHDEKEKVRIENEVHRLVVSRDRKYTNFVEFGTYKLIYRRYAGLFFTFGMDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNKA 111
            IRF LLQNRQGKTRLSKW++    ++EK R+E E+HRLVV RDRKYT+F+EF  YKL+YRRYAGLFFT G+DVNDNELL LET+HLFVELL+ YFSNVCELDIVFNFNK 
Sbjct:    5 IRFFLLQNRQGKTRLSKWYVAPAQDREKSRLEAEIHRLVVGRDRKYTSFIEFMNYKLVYRRYAGLFFTIGIDVNDNELLYLETIHLFVELLDQYFSNVCELDIVFNFNKV 114

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BLAST of mRNA_P-canaliculata_contig10491.667.1 vs. uniprot
Match: F0W4M2_9STRA (AP-2 complex subunit sigma n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W4M2_9STRA)

HSP 1 Score: 172 bits (435), Expect = 2.420e-52
Identity = 83/110 (75.45%), Postives = 98/110 (89.09%), Query Frame = 0

Query:    2 IRFLLLQNRQGKTRLSKWWIPLHDEKEKVRIENEVHRLVVSRDRKYTNFVEFGTYKLIYRRYAGLFFTFGMDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNKA 111
            IRF LLQNRQGKTRLSKW++P  D++EK R+ENE+HRLVVSRD K+TNF+EF +YKLIYRRYAGLFF  G+D++ NELL+LET+HLFVELL+  FSNVCELDIVFNFNK 
Sbjct:   56 IRFFLLQNRQGKTRLSKWYVPAPDDQEKFRLENEIHRLVVSRDAKHTNFIEFRSYKLIYRRYAGLFFILGVDLHANELLSLETIHLFVELLDQQFSNVCELDIVFNFNKV 165

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BLAST of mRNA_P-canaliculata_contig10491.667.1 vs. uniprot
Match: A0A024GMS7_9STRA (AP complex subunit sigma n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GMS7_9STRA)

HSP 1 Score: 169 bits (427), Expect = 2.020e-51
Identity = 80/110 (72.73%), Postives = 98/110 (89.09%), Query Frame = 0

Query:    2 IRFLLLQNRQGKTRLSKWWIPLHDEKEKVRIENEVHRLVVSRDRKYTNFVEFGTYKLIYRRYAGLFFTFGMDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNKA 111
            IRF L+QNRQGKTRLSKW++P  D++EK R+E+E+HRLV+SRD K+TNF+EF +YKLIYRRYAGLFF  G+D++ NELL+LET+HLFVELL+  FSNVCELDIVFNFNK 
Sbjct:   34 IRFFLMQNRQGKTRLSKWYVPAPDDQEKFRLEHEIHRLVISRDAKHTNFIEFRSYKLIYRRYAGLFFILGVDLHANELLSLETIHLFVELLDQQFSNVCELDIVFNFNKV 143

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BLAST of mRNA_P-canaliculata_contig10491.667.1 vs. uniprot
Match: A0A7S0FJC4_9STRA (AP complex subunit sigma n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FJC4_9STRA)

HSP 1 Score: 167 bits (422), Expect = 5.310e-51
Identity = 84/119 (70.59%), Postives = 97/119 (81.51%), Query Frame = 0

Query:    2 IRFLLLQNRQGKTRLSKWWIPLHD-------EKEKVRIENEVHRLVVSRDRKYTNFVEFGTYKLIYRRYAGLFFTFGMDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNKARL 113
            IRF LLQNRQGKTRLSKW++P          E EK RIE+EVHRLV SRD+KYTNF+E+ +YKLIYRRYAGLFFT  +D+ DNEL  LET+HLFVELL+SYFSNVCELDIVFNFN+  +
Sbjct:    2 IRFFLLQNRQGKTRLSKWYVPPPSSTGGGSPEAEKARIESEVHRLVTSRDKKYTNFIEYASYKLIYRRYAGLFFTIAVDITDNELSYLETIHLFVELLDSYFSNVCELDIVFNFNRVYM 120

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BLAST of mRNA_P-canaliculata_contig10491.667.1 vs. uniprot
Match: A0A7S2A2C1_TRICV (AP-2 complex subunit sigma n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A2C1_TRICV)

HSP 1 Score: 169 bits (427), Expect = 1.010e-50
Identity = 86/119 (72.27%), Postives = 96/119 (80.67%), Query Frame = 0

Query:    2 IRFLLLQNRQGKTRLSKWWIP---------LHDEKEKVRIENEVHRLVVSRDRKYTNFVEFGTYKLIYRRYAGLFFTFGMDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNKA 111
            IRF LLQNRQGKTRLSKW++P            E EK RIE++VHRLV SRD+KYTNF+E+  YKLIYRRYAGLFFT  +DVNDNEL  LET+HLFVELL+SYFSNVCELDIVFNFNK 
Sbjct:   78 IRFFLLQNRQGKTRLSKWYVPPPSSPTNKDASPEAEKARIESDVHRLVTSRDKKYTNFIEYNNYKLIYRRYAGLFFTIAVDVNDNELSYLETIHLFVELLDSYFSNVCELDIVFNFNKV 196

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BLAST of mRNA_P-canaliculata_contig10491.667.1 vs. uniprot
Match: A0A7S2VYS3_9STRA (AP complex subunit sigma n=2 Tax=Mediophyceae TaxID=589449 RepID=A0A7S2VYS3_9STRA)

HSP 1 Score: 166 bits (420), Expect = 1.180e-50
Identity = 86/122 (70.49%), Postives = 96/122 (78.69%), Query Frame = 0

Query:    2 IRFLLLQNRQGKTRLSKWWIP----------LHDEKEKVRIENEVHRLVVSRDRKYTNFVEFGTYKLIYRRYAGLFFTFGMDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNKARL 113
            IRF LLQNRQGKTRLSKW++P             E EKVRIE EVHRLV +RD+KYTNF+E+  YKLIYRRYAGLFFT  +D+ DNEL  LET+HLFVELL+SYFSNVCELDIVFNFNK  L
Sbjct:    2 IRFFLLQNRQGKTRLSKWYVPPPVPANGVNVSSGEAEKVRIEAEVHRLVTARDKKYTNFIEYNNYKLIYRRYAGLFFTIAVDIADNELSYLETIHLFVELLDSYFSNVCELDIVFNFNKVYL 123

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BLAST of mRNA_P-canaliculata_contig10491.667.1 vs. uniprot
Match: B8C940_THAPS (AP complex subunit sigma (Fragment) n=2 Tax=Thalassiosira TaxID=35127 RepID=B8C940_THAPS)

HSP 1 Score: 165 bits (418), Expect = 1.680e-50
Identity = 84/111 (75.68%), Postives = 93/111 (83.78%), Query Frame = 0

Query:    1 QIRFLLLQNRQGKTRLSKWWIPLHDEKEKVRIENEVHRLVVSRDRKYTNFVEFGTYKLIYRRYAGLFFTFGMDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNKA 111
            QIRF LLQNRQGKTRLSKW+ P     EK RIE EVHRLV SRD+KYTNF+E+  YKLIYRRYAGLFFT  +DV DNEL  LE++HLFVELL+SYF+NVCELDIVFNFNK 
Sbjct:    1 QIRFFLLQNRQGKTRLSKWYDP-PPPSEKARIETEVHRLVTSRDKKYTNFIEYNNYKLIYRRYAGLFFTIAVDVQDNELSYLESIHLFVELLDSYFANVCELDIVFNFNKV 110

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BLAST of mRNA_P-canaliculata_contig10491.667.1 vs. uniprot
Match: A0A4D9D180_9STRA (AP complex subunit sigma n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D180_9STRA)

HSP 1 Score: 165 bits (418), Expect = 2.030e-50
Identity = 82/110 (74.55%), Postives = 95/110 (86.36%), Query Frame = 0

Query:    2 IRFLLLQNRQGKTRLSKWWIPLHDEKEKVRIENEVHRLVVSRDRKYTNFVEFGTYKLIYRRYAGLFFTFGMDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNKA 111
            IRFLLLQNRQGKTRLSKW+I   +E EK R+E +VH+L+VSRDRKYTNFVE+  YKLIYRRYAGL+F+ G+DV DNEL  LE++HLFVELL+ YF NVCELDIVFNFNK 
Sbjct:    2 IRFLLLQNRQGKTRLSKWYILPPNEAEKFRLEADVHKLIVSRDRKYTNFVEYQNYKLIYRRYAGLYFSLGVDVTDNELAYLESIHLFVELLDEYFRNVCELDIVFNFNKV 111

The following BLAST results are available for this feature:

BLAST of mRNA_P-canaliculata_contig10491.667.1 vs. uniprot

BLAST of mRNA_P-canaliculata_contig10491.667.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LQX3_ECTSI	2.710e-70	97.27	AP complex subunit sigma n=2 Tax=Ectocarpus TaxID=...	[more]
A0A835YZE0_9STRA	1.320e-61	86.36	AP complex subunit sigma n=1 Tax=Tribonema minus T...	[more]
A0A7S2CS13_9STRA	2.600e-53	76.36	AP complex subunit sigma n=1 Tax=Dictyocha speculu...	[more]
F0W4M2_9STRA	2.420e-52	75.45	AP-2 complex subunit sigma n=1 Tax=Albugo laibachi...	[more]
A0A024GMS7_9STRA	2.020e-51	72.73	AP complex subunit sigma n=1 Tax=Albugo candida Ta...	[more]
A0A7S0FJC4_9STRA	5.310e-51	70.59	AP complex subunit sigma n=1 Tax=Minutocellus poly...	[more]
A0A7S2A2C1_TRICV	1.010e-50	72.27	AP-2 complex subunit sigma n=1 Tax=Trieres chinens...	[more]
A0A7S2VYS3_9STRA	1.180e-50	70.49	AP complex subunit sigma n=2 Tax=Mediophyceae TaxI...	[more]
B8C940_THAPS	1.680e-50	75.68	AP complex subunit sigma (Fragment) n=2 Tax=Thalas...	[more]
A0A4D9D180_9STRA	2.030e-50	74.55	AP complex subunit sigma n=1 Tax=Nannochloropsis s...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022775	AP complex, mu/sigma subunit	PFAM	PF01217	Clat_adaptor_s	coord: 1..111 e-value: 3.5E-38 score: 130.7
None	No IPR available	GENE3D	3.30.450.60		coord: 2..113 e-value: 4.5E-41 score: 142.1
IPR016635	Adaptor protein complex, sigma subunit	PIRSF	PIRSF015588	AP_complex_sigma	coord: 1..113 e-value: 9.6E-47 score: 156.6
IPR016635	Adaptor protein complex, sigma subunit	PANTHER	PTHR11753	CLATHRIN COAT ASSEMBLY PROTEIN	coord: 2..111
IPR027156	AP-2 complex subunit sigma	PANTHER	PTHR11753:SF6	AP-2 COMPLEX SUBUNIT SIGMA	coord: 2..111
IPR011012	Longin-like domain superfamily	SUPERFAMILY	64356	SNARE-like	coord: 2..111

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-canaliculata_contig10491	contig	P-canaliculata_contig10491:1035..2361 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Pelvetia canaliculata dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_P-canaliculata_contig10491.667.1	mRNA_P-canaliculata_contig10491.667.1	Pelvetia canaliculata dioecious	mRNA	P-canaliculata_contig10491 1035..3244 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_P-canaliculata_contig10491.667.1 ID=prot_P-canaliculata_contig10491.667.1|Name=mRNA_P-canaliculata_contig10491.667.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=114bp
QIRFLLLQNRQGKTRLSKWWIPLHDEKEKVRIENEVHRLVVSRDRKYTNF
VEFGTYKLIYRRYAGLFFTFGMDVNDNELLALETVHLFVELLESYFSNVC
ELDIVFNFNKARL*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR022775	AP_mu_sigma_su
IPR016635	AP_complex_ssu
IPR027156	APS2
IPR011012	Longin-like_dom_sf