mRNA_P-canaliculata_contig10491.667.1 (mRNA) Pelvetia canaliculata dioecious
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig10491.667.1 vs. uniprot
Match: D8LQX3_ECTSI (AP complex subunit sigma n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQX3_ECTSI) HSP 1 Score: 216 bits (549), Expect = 3.120e-68 Identity = 107/109 (98.17%), Postives = 109/109 (100.00%), Query Frame = 1
Query: 4 IRFLLLQNRQGKTRLSKWWIPLHDEKEKVRIENEVHRLVVSRDRKYTNFVEFGTYKLIYRRYAGLFFTFGMDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNK 330
IRFLLLQNRQGKTRLSKWWIPLHDEKEKVRIENEVHRLVV+RDRKYTNFVE+GTYKLIYRRYAGLFFTFGMDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNK
Sbjct: 2 IRFLLLQNRQGKTRLSKWWIPLHDEKEKVRIENEVHRLVVTRDRKYTNFVEYGTYKLIYRRYAGLFFTFGMDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNK 110
BLAST of mRNA_P-canaliculata_contig10491.667.1 vs. uniprot
Match: A0A835YZE0_9STRA (AP complex subunit sigma n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZE0_9STRA) HSP 1 Score: 194 bits (492), Expect = 1.380e-59 Identity = 95/109 (87.16%), Postives = 106/109 (97.25%), Query Frame = 1
Query: 4 IRFLLLQNRQGKTRLSKWWIPLHDEKEKVRIENEVHRLVVSRDRKYTNFVEFGTYKLIYRRYAGLFFTFGMDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNK 330
IRFLLLQNRQGKTRLSKW+IPL+DE+EK +IEN+VHRLVVSRDRKYTNF+E+ +YK+IYRRYAGLFFT G+DVNDNELLALETVHLFVELL+SYFSNVCELDIVFNFNK
Sbjct: 2 IRFLLLQNRQGKTRLSKWYIPLYDEQEKNKIENDVHRLVVSRDRKYTNFIEYQSYKIIYRRYAGLFFTLGVDVNDNELLALETVHLFVELLDSYFSNVCELDIVFNFNK 110
BLAST of mRNA_P-canaliculata_contig10491.667.1 vs. uniprot
Match: A0A7S2CS13_9STRA (AP complex subunit sigma n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CS13_9STRA) HSP 1 Score: 173 bits (438), Expect = 2.420e-51 Identity = 84/109 (77.06%), Postives = 96/109 (88.07%), Query Frame = 1
Query: 4 IRFLLLQNRQGKTRLSKWWIPLHDEKEKVRIENEVHRLVVSRDRKYTNFVEFGTYKLIYRRYAGLFFTFGMDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNK 330
IRF LLQNRQGKTRLSKW++ ++EK R+E E+HRLVV RDRKYT+F+EF YKL+YRRYAGLFFT G+DVNDNELL LET+HLFVELL+ YFSNVCELDIVFNFNK
Sbjct: 5 IRFFLLQNRQGKTRLSKWYVAPAQDREKSRLEAEIHRLVVGRDRKYTSFIEFMNYKLVYRRYAGLFFTIGIDVNDNELLYLETIHLFVELLDQYFSNVCELDIVFNFNK 113
BLAST of mRNA_P-canaliculata_contig10491.667.1 vs. uniprot
Match: F0W4M2_9STRA (AP-2 complex subunit sigma n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W4M2_9STRA) HSP 1 Score: 172 bits (436), Expect = 2.250e-50 Identity = 83/109 (76.15%), Postives = 98/109 (89.91%), Query Frame = 1
Query: 4 IRFLLLQNRQGKTRLSKWWIPLHDEKEKVRIENEVHRLVVSRDRKYTNFVEFGTYKLIYRRYAGLFFTFGMDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNK 330
IRF LLQNRQGKTRLSKW++P D++EK R+ENE+HRLVVSRD K+TNF+EF +YKLIYRRYAGLFF G+D++ NELL+LET+HLFVELL+ FSNVCELDIVFNFNK
Sbjct: 56 IRFFLLQNRQGKTRLSKWYVPAPDDQEKFRLENEIHRLVVSRDAKHTNFIEFRSYKLIYRRYAGLFFILGVDLHANELLSLETIHLFVELLDQQFSNVCELDIVFNFNK 164
BLAST of mRNA_P-canaliculata_contig10491.667.1 vs. uniprot
Match: A0A024GMS7_9STRA (AP complex subunit sigma n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GMS7_9STRA) HSP 1 Score: 169 bits (428), Expect = 1.840e-49 Identity = 80/109 (73.39%), Postives = 98/109 (89.91%), Query Frame = 1
Query: 4 IRFLLLQNRQGKTRLSKWWIPLHDEKEKVRIENEVHRLVVSRDRKYTNFVEFGTYKLIYRRYAGLFFTFGMDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNK 330
IRF L+QNRQGKTRLSKW++P D++EK R+E+E+HRLV+SRD K+TNF+EF +YKLIYRRYAGLFF G+D++ NELL+LET+HLFVELL+ FSNVCELDIVFNFNK
Sbjct: 34 IRFFLMQNRQGKTRLSKWYVPAPDDQEKFRLEHEIHRLVISRDAKHTNFIEFRSYKLIYRRYAGLFFILGVDLHANELLSLETIHLFVELLDQQFSNVCELDIVFNFNK 142
BLAST of mRNA_P-canaliculata_contig10491.667.1 vs. uniprot
Match: A0A7S0FJC4_9STRA (AP complex subunit sigma n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FJC4_9STRA) HSP 1 Score: 167 bits (423), Expect = 4.770e-49 Identity = 84/119 (70.59%), Postives = 97/119 (81.51%), Query Frame = 1
Query: 4 IRFLLLQNRQGKTRLSKWWIPLHD-------EKEKVRIENEVHRLVVSRDRKYTNFVEFGTYKLIYRRYAGLFFTFGMDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNKARL 339
IRF LLQNRQGKTRLSKW++P E EK RIE+EVHRLV SRD+KYTNF+E+ +YKLIYRRYAGLFFT +D+ DNEL LET+HLFVELL+SYFSNVCELDIVFNFN+ +
Sbjct: 2 IRFFLLQNRQGKTRLSKWYVPPPSSTGGGSPEAEKARIESEVHRLVTSRDKKYTNFIEYASYKLIYRRYAGLFFTIAVDITDNELSYLETIHLFVELLDSYFSNVCELDIVFNFNRVYM 120
BLAST of mRNA_P-canaliculata_contig10491.667.1 vs. uniprot
Match: A0A7S2A2C1_TRICV (AP-2 complex subunit sigma n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A2C1_TRICV) HSP 1 Score: 169 bits (428), Expect = 9.200e-49 Identity = 86/118 (72.88%), Postives = 96/118 (81.36%), Query Frame = 1
Query: 4 IRFLLLQNRQGKTRLSKWWIP---------LHDEKEKVRIENEVHRLVVSRDRKYTNFVEFGTYKLIYRRYAGLFFTFGMDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNK 330
IRF LLQNRQGKTRLSKW++P E EK RIE++VHRLV SRD+KYTNF+E+ YKLIYRRYAGLFFT +DVNDNEL LET+HLFVELL+SYFSNVCELDIVFNFNK
Sbjct: 78 IRFFLLQNRQGKTRLSKWYVPPPSSPTNKDASPEAEKARIESDVHRLVTSRDKKYTNFIEYNNYKLIYRRYAGLFFTIAVDVNDNELSYLETIHLFVELLDSYFSNVCELDIVFNFNK 195
BLAST of mRNA_P-canaliculata_contig10491.667.1 vs. uniprot
Match: A0A7S2VYS3_9STRA (AP complex subunit sigma n=2 Tax=Mediophyceae TaxID=589449 RepID=A0A7S2VYS3_9STRA) HSP 1 Score: 166 bits (421), Expect = 1.050e-48 Identity = 86/122 (70.49%), Postives = 96/122 (78.69%), Query Frame = 1
Query: 4 IRFLLLQNRQGKTRLSKWWIP----------LHDEKEKVRIENEVHRLVVSRDRKYTNFVEFGTYKLIYRRYAGLFFTFGMDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNKARL 339
IRF LLQNRQGKTRLSKW++P E EKVRIE EVHRLV +RD+KYTNF+E+ YKLIYRRYAGLFFT +D+ DNEL LET+HLFVELL+SYFSNVCELDIVFNFNK L
Sbjct: 2 IRFFLLQNRQGKTRLSKWYVPPPVPANGVNVSSGEAEKVRIEAEVHRLVTARDKKYTNFIEYNNYKLIYRRYAGLFFTIAVDIADNELSYLETIHLFVELLDSYFSNVCELDIVFNFNKVYL 123
BLAST of mRNA_P-canaliculata_contig10491.667.1 vs. uniprot
Match: B8C940_THAPS (AP complex subunit sigma (Fragment) n=2 Tax=Thalassiosira TaxID=35127 RepID=B8C940_THAPS) HSP 1 Score: 166 bits (419), Expect = 1.490e-48 Identity = 84/110 (76.36%), Postives = 93/110 (84.55%), Query Frame = 1
Query: 1 QIRFLLLQNRQGKTRLSKWWIPLHDEKEKVRIENEVHRLVVSRDRKYTNFVEFGTYKLIYRRYAGLFFTFGMDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNK 330
QIRF LLQNRQGKTRLSKW+ P EK RIE EVHRLV SRD+KYTNF+E+ YKLIYRRYAGLFFT +DV DNEL LE++HLFVELL+SYF+NVCELDIVFNFNK
Sbjct: 1 QIRFFLLQNRQGKTRLSKWYDP-PPPSEKARIETEVHRLVTSRDKKYTNFIEYNNYKLIYRRYAGLFFTIAVDVQDNELSYLESIHLFVELLDSYFANVCELDIVFNFNK 109
BLAST of mRNA_P-canaliculata_contig10491.667.1 vs. uniprot
Match: A0A4D9D180_9STRA (AP complex subunit sigma n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D180_9STRA) HSP 1 Score: 166 bits (419), Expect = 1.800e-48 Identity = 82/109 (75.23%), Postives = 95/109 (87.16%), Query Frame = 1
Query: 4 IRFLLLQNRQGKTRLSKWWIPLHDEKEKVRIENEVHRLVVSRDRKYTNFVEFGTYKLIYRRYAGLFFTFGMDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNK 330
IRFLLLQNRQGKTRLSKW+I +E EK R+E +VH+L+VSRDRKYTNFVE+ YKLIYRRYAGL+F+ G+DV DNEL LE++HLFVELL+ YF NVCELDIVFNFNK
Sbjct: 2 IRFLLLQNRQGKTRLSKWYILPPNEAEKFRLEADVHKLIVSRDRKYTNFVEYQNYKLIYRRYAGLYFSLGVDVTDNELAYLESIHLFVELLDEYFRNVCELDIVFNFNK 110 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10491.667.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig10491.667.1 >prot_P-canaliculata_contig10491.667.1 ID=prot_P-canaliculata_contig10491.667.1|Name=mRNA_P-canaliculata_contig10491.667.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=114bp QIRFLLLQNRQGKTRLSKWWIPLHDEKEKVRIENEVHRLVVSRDRKYTNFback to top mRNA from alignment at P-canaliculata_contig10491:1035..3244+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig10491.667.1 ID=mRNA_P-canaliculata_contig10491.667.1|Name=mRNA_P-canaliculata_contig10491.667.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=2210bp|location=Sequence derived from alignment at P-canaliculata_contig10491:1035..3244+ (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig10491:1035..3244+ >mRNA_P-canaliculata_contig10491.667.1 ID=mRNA_P-canaliculata_contig10491.667.1|Name=mRNA_P-canaliculata_contig10491.667.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=684bp|location=Sequence derived from alignment at P-canaliculata_contig10491:1035..3244+ (Pelvetia canaliculata dioecious)back to top |