prot_P-canaliculata_contig10460.630.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_P-canaliculata_contig10460.630.1
Unique Name	prot_P-canaliculata_contig10460.630.1
Type	polypeptide
Organism	Pelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length	186

Homology

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BLAST of mRNA_P-canaliculata_contig10460.630.1 vs. uniprot
Match: D8LTR4_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTR4_ECTSI)

HSP 1 Score: 312 bits (799), Expect = 7.530e-106
Identity = 147/185 (79.46%), Postives = 165/185 (89.19%), Query Frame = 0

Query:    1 MELTGPQYVKTLPGSSPPIRYFDPLDISSKFRAIDVKKFRESEVKHARLAMLAFAGMFVQELAHPLFDTGARDLGPAIYHFQAISKVFPLMPALLLVNIGILEGNNIFVGWVKQPIQEGVADLKKDYEPGNFGFDPIGLMPKDEAGQMQMKTKELNNGRLAMIATIGVWAQELVDGKTILGHWFG 185
            +ELTGPQYVKTL G+S P  YFDPL+ISSKFRAIDVKKFRESE+KHAR+AMLAF GMFVQELAHPLF+ G +D+GPAI HFQA++  FPLMPALLL+ +GI EGNNI+VGWVKQP++ GVADLK DYEPG+FGFDP+GL PKDEAG+  M TKELNNGRLAMIATIGVWAQELVDGKTILGH  G
Sbjct:   55 IELTGPQYVKTLAGASAPFPYFDPLEISSKFRAIDVKKFRESEIKHARVAMLAFLGMFVQELAHPLFENGGKDIGPAIVHFQAVTNYFPLMPALLLIIVGIFEGNNIYVGWVKQPLKLGVADLKPDYEPGSFGFDPLGLYPKDEAGKKAMMTKELNNGRLAMIATIGVWAQELVDGKTILGHLSG 239

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BLAST of mRNA_P-canaliculata_contig10460.630.1 vs. uniprot
Match: A0A835Z091_9STRA (Fucoxanthin chlorophyll a/c binding protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z091_9STRA)

HSP 1 Score: 189 bits (481), Expect = 8.680e-58
Identity = 90/178 (50.56%), Postives = 121/178 (67.98%), Query Frame = 0

Query:    8 YVKTLPGSSPPIRYFDPLDISSKFRAIDVKKFRESEVKHARLAMLAFAGMFVQELAHPLFDTGARDLGPAIYHFQAISKVFPLMPALLLVNIGILEGNNIFVGWVKQPIQEG--VADLKKDYEPGNFGFDPIGLMPKDEAGQMQMKTKELNNGRLAMIATIGVWAQELVDGKTILGHW 183
            + + + G++ P  +FDP+  SS      VKKFRE+EVKH R+AMLAF G+ +QE  HP F+ G  DLGPA +H Q +   FPL+   L   IG++E   I  GW K+  ++   VA+L ++Y PG+  FDP+ L PKD AG  +M+TKELNNGRLAMIAT+G+W QELVDG+TI GH+
Sbjct:   42 FKEEMAGATAPFGFFDPVGFSSDADDKKVKKFREAEVKHGRVAMLAFLGLLIQENFHPFFEQGEADLGPASFHLQQVDDKFPLLSLTLFFGIGLVESFTIGRGWSKRDFEDNGFVANLNEEYLPGDLKFDPLNLKPKDAAGLKEMQTKELNNGRLAMIATLGIWGQELVDGQTIAGHF 219

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BLAST of mRNA_P-canaliculata_contig10460.630.1 vs. uniprot
Match: A0A835ZAU2_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAU2_9STRA)

HSP 1 Score: 176 bits (445), Expect = 5.950e-52
Identity = 85/182 (46.70%), Postives = 123/182 (67.58%), Query Frame = 0

Query:    9 VKTLPGSSPPIRYFDPLDISSKFRAIDVKKFRESEVKHARLAMLAFAGMFVQELA-HPLFDTGARDLGPAIYHFQAISKVFPLMPALLLVNIGILEGNNIFVGWVKQPIQ-----EG-VADLKKDYEPGNFGFDPIGLMPKDEAGQMQMKTKELNNGRLAMIATIGVWAQELVDGKTILGHW 183
            ++ + G++ P+ ++DPL  +++    +++K+RE+E+KH R+AMLA  GM VQE   HP F T   DLGPA +H Q +   +P +P LLLV +G +E   I  GW KQ  +     EG VA+LK+DY PG+ GFDP+GL P+ E G+  ++ KE+NNGRLAMIA  G+WAQELVDG ++  H+
Sbjct:   48 LQNMSGATAPVPFWDPLGFAAQVDGQELQKYREAELKHGRVAMLACLGMIVQEAGFHPFFGTAGADLGPAAFHLQKVGVNYPTLPLLLLVGVGAVESFTINKGWSKQDYKSSGLGEGFVANLKEDYFPGDLGFDPLGLYPQSEEGRRSIRNKEINNGRLAMIAIWGMWAQELVDGMSLYEHY 229

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BLAST of mRNA_P-canaliculata_contig10460.630.1 vs. uniprot
Match: A0A836CA40_9STRA (Light harvesting complex protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA40_9STRA)

HSP 1 Score: 172 bits (437), Expect = 9.860e-51
Identity = 83/181 (45.86%), Postives = 120/181 (66.30%), Query Frame = 0

Query:    9 VKTLPGSSPPIRYFDPLDISSKFRAIDVKKFRESEVKHARLAMLAFAGMFVQELAHPLFDTGARDLGPAIYHFQAISKVFPLMPALLLVNIGILEGNNIFVGWVKQPIQEG------VADLKKDYEPGNFGFDPIGLMPKDEAGQMQMKTKELNNGRLAMIATIGVWAQELVDGKTILGHW 183
            ++ + G++ P+ Y+DPL  +SK    +++K+RE+E+KH R+AMLA  GM VQE  HP F+T  RD+GPA +H Q   + F  +P  L++ +G++E   I  GW KQ  +E       VA+LK+DY PG+ GFDP+GL P +   +  ++ KELNNGRLAMIA  G+WAQELVD  T+  H+
Sbjct:   47 LENMSGATSPVPYWDPLGFASKVDDQELQKYREAELKHGRVAMLAALGMIVQENFHPFFNTAGRDIGPAAFHLQKTMEEFSFLPFALVLGVGLVELTTINKGWSKQDYKETGLGAGFVANLKEDYFPGDLGFDPLGLYPTNPRERTNIRNKELNNGRLAMIAIWGMWAQELVDHLTLAEHF 227

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BLAST of mRNA_P-canaliculata_contig10460.630.1 vs. uniprot
Match: A0A835YMD9_9STRA (Fucoxanthin chlorophyll a/c protein, LI818 clade n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMD9_9STRA)

HSP 1 Score: 166 bits (419), Expect = 3.040e-48
Identity = 80/181 (44.20%), Postives = 115/181 (63.54%), Query Frame = 0

Query:    9 VKTLPGSSPPIRYFDPLDISSKFRAIDVKKFRESEVKHARLAMLAFAGMFVQELAHPLFDTGARDLGPAIYHFQAISKVFPLMPALLLVNIGILEGNNIFVGWVKQPIQEG------VADLKKDYEPGNFGFDPIGLMPKDEAGQMQMKTKELNNGRLAMIATIGVWAQELVDGKTILGHW 183
            ++ + G++ P+ Y+DP  +++K    +++K+RE+E+KH R+AMLA  GM VQE  HP F T  RD+GPA +H Q   K F  +P  L+  +G +E   I  GW +   +E       VA+LK+DY PG+ GFDP+GL P     +  ++ KELNNGRLAMIA  G+WAQELVDG  +  H+
Sbjct:   45 LEEMSGATAPVPYWDPAGLAAKVDDQELQKYREAELKHGRVAMLATLGMVVQENFHPFFGTAGRDIGPAAFHLQETMKEFDALPLALVCGVGAVEFLTIDKGWSRSDYKETGLGAGFVANLKEDYFPGDLGFDPLGLYPSSPEERTNIRNKELNNGRLAMIAIWGMWAQELVDGLPLAEHY 225

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BLAST of mRNA_P-canaliculata_contig10460.630.1 vs. uniprot
Match: A0A836CGF9_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGF9_9STRA)

HSP 1 Score: 165 bits (417), Expect = 3.190e-48
Identity = 81/166 (48.80%), Postives = 114/166 (68.67%), Query Frame = 0

Query:   22 FDPLDISSKFRAIDVKKFRESEVKHARLAMLAFAGMFVQELAHPLFDTGARDLGPAIYHFQAISKVFPLMPALLLVNIGILEGNNIFVGWVKQ-PIQEGVADLKKDYEPGNFGFDPIGLMPKDEAGQMQ-MKTKELNNGRLAMIATIGVWAQELVDGKTILGHWFG 185
            FDPL ++SK   I++K+++E E+KH R+AMLA  G  V E+ HPLF   + ++GP+I HFQ I +  P    L +  IG+ E +NI+ GWVKQ PI++G+A LK +Y  G+FGFDP+ L P  E  + + M+ KELNNGRLAM A +G+WAQELV+GK +  +  G
Sbjct:   48 FDPLGLASKVSDIELKRYQECELKHGRVAMLAVLGSLVAEVFHPLFPM-SFEIGPSIRHFQIIEREVPYFWILAMFGIGVFEADNIYRGWVKQDPIRDGIASLKDNYIVGDFGFDPLNLGPTSEPQKFELMRAKELNNGRLAMFAILGIWAQELVNGKGVFENILG 212

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BLAST of mRNA_P-canaliculata_contig10460.630.1 vs. uniprot
Match: A0A7S3YG15_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YG15_HETAK)

HSP 1 Score: 162 bits (409), Expect = 9.270e-47
Identity = 81/173 (46.82%), Postives = 110/173 (63.58%), Query Frame = 0

Query:    9 VKTLPGSSPPIRYFDPLDISSKFRAIDVKKFRESEVKHARLAMLAFAGMFVQELAHPLFDTGARDLGPAIYHFQAISKVFPLMPALLLVNIGILEGNNIFVGW--VKQPIQEGVADLKKDYEPGNFGFDPIGLMPKDEAGQMQMKTKELNNGRLAMIATIGVWAQELVDGKTI 179
            V+ LPG  PP+ +FDPL IS       +KKFRE+E+KH R+AMLA  G+ + E  +PLFD   + LG  IYHFQ   ++ P    ++L  I ++EG  I   W  V+    + +ADL+ DYEPG+ GFDP+GL P D A   +M+TKEL NGRLAM+   G+ AQEL+ G+ I
Sbjct:   58 VEDLPGVLPPVGFFDPLGISQGKNENAIKKFREAELKHGRIAMLASVGILLAERFNPLFD--GKILGAGIYHFQQADQLLPYFWVIVLFAIALIEGQTILTAWDSVEDSQNKPIADLRADYEPGDLGFDPLGLAPSDPAALAEMRTKELQNGRLAMLGIAGIVAQELLTGQPI 228

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BLAST of mRNA_P-canaliculata_contig10460.630.1 vs. uniprot
Match: D7G7Q9_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q9_ECTSI)

HSP 1 Score: 156 bits (394), Expect = 1.350e-44
Identity = 89/183 (48.63%), Postives = 111/183 (60.66%), Query Frame = 0

Query:    5 GPQYVKTLPGSSPPI---RYFDPLDISSKFRAIDVKKFRESEVKHARLAMLAFAGMFVQELAHPLFDTGARDLGPAIYHFQAISKVFPLMPALLLVNIGILEGNNIFVGWVKQPIQEGVADLKKDYEPGNFGFDPIGLMPKDEAGQMQMKTKELNNGRLAMIATIGVWAQELVDGKTILGHWF 184
            G  YV TLPG+  P    + FDPL +S      D+KK+RE+E+KH R+AMLA  G+ V E  HPLF  G   +GPAI HFQ IS  FP   A  L+ +  +E N I   +       G   LK+DY PG+ GFDP+ L P  EA    MKTKELNNGRLAMI   G+ AQELV+G+ IL ++F
Sbjct:   44 GSDYVATLPGA--PFSDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLF-MGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDGEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDILPNFF 223

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BLAST of mRNA_P-canaliculata_contig10460.630.1 vs. uniprot
Match: A0A7R9U0X8_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U0X8_9STRA)

HSP 1 Score: 155 bits (393), Expect = 1.390e-44
Identity = 83/172 (48.26%), Postives = 111/172 (64.53%), Query Frame = 0

Query:    9 VKTLPGSSPPIRYFDPLDISSKFRAIDVKKFRESEVKHARLAMLAFAGMFVQELAHPLFDTGARDLGPAIYHFQAISKVFPLMPALLLVNIGILEGNNIFVGW--VKQPIQEG--VADLKKDYEPGNFGFDPIGLMPKDEAGQMQMKTKELNNGRLAMIATIGVWAQELVDG 176
            + ++PGSS P   FDPL +S+    + +KK++E+E+KH R+AMLA  G+ VQE  HPLF  G    GPAI+ FQ +  V+PL        +  +EG  I  GW  +++    G  VA LK+DY PG+ GFDP+GL PKDEAG  +M+TKELN+ RLAMI   G+ AQELV G
Sbjct:   33 LSSIPGSSSPFPGFDPLGLSTDLDDMTLKKYQEAELKHGRIAMLAALGILVQESFHPLF--GGAISGPAIFEFQQVDNVYPLFWVAFGTAVAFVEGTTINQGWESIRETKARGADVAGLKEDYTPGDIGFDPLGLCPKDEAGFAEMRTKELNHCRLAMIGVAGMVAQELVLG 202

[Close]

BLAST of mRNA_P-canaliculata_contig10460.630.1 vs. uniprot
Match: D7G7Q6_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q6_ECTSI)

HSP 1 Score: 152 bits (383), Expect = 5.470e-43
Identity = 84/180 (46.67%), Postives = 108/180 (60.00%), Query Frame = 0

Query:    5 GPQYVKTLPGSSPPI---RYFDPLDISSKFRAIDVKKFRESEVKHARLAMLAFAGMFVQELAHPLFDTGARDLGPAIYHFQAISKVFPLMPALLLVNIGILEGNNIFVGWVKQPIQEGVADLKKDYEPGNFGFDPIGLMPKDEAGQMQMKTKELNNGRLAMIATIGVWAQELVDGKTILG 181
            G  YV TLPG+  P    + FDPL++S      D+KK+RE+E+KH R+AMLA  G+ V E  HPLF  G   +GPA+ HFQ IS  +P      L+ +  +E N I   +       G   LK+DY PG+ GFDP+ L P+DEA    MKTKELNNGRLAMI   G+  QEL++   ILG
Sbjct:   44 GSDYVATLPGA--PFGDGKIFDPLNLSDGADPADIKKWREAEIKHGRVAMLASLGVLVAEQYHPLF-MGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKEDYVPGDLGFDPLNLKPEDEAALDVMKTKELNNGRLAMIGIAGMLVQELINPADILG 220

The following BLAST results are available for this feature:

BLAST of mRNA_P-canaliculata_contig10460.630.1 vs. uniprot

BLAST of mRNA_P-canaliculata_contig10460.630.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LTR4_ECTSI	7.530e-106	79.46	Light harvesting complex protein n=2 Tax=Ectocarpu...	[more]
A0A835Z091_9STRA	8.680e-58	50.56	Fucoxanthin chlorophyll a/c binding protein n=1 Ta...	[more]
A0A835ZAU2_9STRA	5.950e-52	46.70	Light harvesting complex protein n=1 Tax=Tribonema...	[more]
A0A836CA40_9STRA	9.860e-51	45.86	Light harvesting complex protein n=2 Tax=Tribonema...	[more]
A0A835YMD9_9STRA	3.040e-48	44.20	Fucoxanthin chlorophyll a/c protein, LI818 clade n...	[more]
A0A836CGF9_9STRA	3.190e-48	48.80	Light harvesting complex protein n=1 Tax=Tribonema...	[more]
A0A7S3YG15_HETAK	9.270e-47	46.82	Hypothetical protein n=1 Tax=Heterosigma akashiwo ...	[more]
D7G7Q9_ECTSI	1.350e-44	48.63	Light harvesting complex protein n=2 Tax=Ectocarpu...	[more]
A0A7R9U0X8_9STRA	1.390e-44	48.26	Hypothetical protein n=2 Tax=Pinguiococcus pyrenoi...	[more]
D7G7Q6_ECTSI	5.470e-43	46.67	Light harvesting complex protein n=2 Tax=Ectocarpu...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10		coord: 2..185 e-value: 2.0E-37 score: 130.8
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 10..172 e-value: 1.2E-34 score: 120.1
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 15..177
None	No IPR available	PANTHER	PTHR21649:SF63		coord: 15..177
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 7..183

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-canaliculata_contig10460	contig	P-canaliculata_contig10460:6717..8903 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Pelvetia canaliculata dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_P-canaliculata_contig10460.630.1	mRNA_P-canaliculata_contig10460.630.1	Pelvetia canaliculata dioecious	mRNA	P-canaliculata_contig10460 5834..8984 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_P-canaliculata_contig10460.630.1 ID=prot_P-canaliculata_contig10460.630.1|Name=mRNA_P-canaliculata_contig10460.630.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=186bp
MELTGPQYVKTLPGSSPPIRYFDPLDISSKFRAIDVKKFRESEVKHARLA
MLAFAGMFVQELAHPLFDTGARDLGPAIYHFQAISKVFPLMPALLLVNIG
ILEGNNIFVGWVKQPIQEGVADLKKDYEPGNFGFDPIGLMPKDEAGQMQM
KTKELNNGRLAMIATIGVWAQELVDGKTILGHWFG*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR023329	Chlorophyll_a/b-bd_dom_sf
IPR022796	Chloroa_b-bind
IPR001344	Chloro_AB-bd_pln