mRNA_P-canaliculata_contig10460.630.1 (mRNA) Pelvetia canaliculata dioecious
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig10460.630.1 vs. uniprot
Match: D8LTR4_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTR4_ECTSI) HSP 1 Score: 336 bits (862), Expect = 2.060e-110 Identity = 164/213 (77.00%), Postives = 185/213 (86.85%), Query Frame = 1
Query: 1 SRTFL-SGSSQFDQILSDPEGDETPDRPMELTGPQYVKTLPGSSPPIRYFDPLDISSKFRAIDVKKFRESEVKHARLAMLAFAGMFVQELAHPLFDTGARDLGPAIYHFQAISKVFPLMPALLLVNIGILEGNNIFVGWVKQPIQEGVADLKKDYEPGNFGFDPIGLMPKDEAGQMQMKTKELNNGRLAMIATIGVWAQELVDGKTILGHWFG 636
SRT L SGS+QFD+IL PE +E P P+ELTGPQYVKTL G+S P YFDPL+ISSKFRAIDVKKFRESE+KHAR+AMLAF GMFVQELAHPLF+ G +D+GPAI HFQA++ FPLMPALLL+ +GI EGNNI+VGWVKQP++ GVADLK DYEPG+FGFDP+GL PKDEAG+ M TKELNNGRLAMIATIGVWAQELVDGKTILGH G
Sbjct: 28 SRTSLASGSAQFDEILQAPEAEEPPP-PIELTGPQYVKTLAGASAPFPYFDPLEISSKFRAIDVKKFRESEIKHARVAMLAFLGMFVQELAHPLFENGGKDIGPAIVHFQAVTNYFPLMPALLLIIVGIFEGNNIYVGWVKQPLKLGVADLKPDYEPGSFGFDPLGLYPKDEAGKKAMMTKELNNGRLAMIATIGVWAQELVDGKTILGHLSG 239
BLAST of mRNA_P-canaliculata_contig10460.630.1 vs. uniprot
Match: A0A835Z091_9STRA (Fucoxanthin chlorophyll a/c binding protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z091_9STRA) HSP 1 Score: 191 bits (484), Expect = 3.900e-54 Identity = 90/178 (50.56%), Postives = 121/178 (67.98%), Query Frame = 1
Query: 103 YVKTLPGSSPPIRYFDPLDISSKFRAIDVKKFRESEVKHARLAMLAFAGMFVQELAHPLFDTGARDLGPAIYHFQAISKVFPLMPALLLVNIGILEGNNIFVGWVKQPIQEG--VADLKKDYEPGNFGFDPIGLMPKDEAGQMQMKTKELNNGRLAMIATIGVWAQELVDGKTILGHW 630
+ + + G++ P +FDP+ SS VKKFRE+EVKH R+AMLAF G+ +QE HP F+ G DLGPA +H Q + FPL+ L IG++E I GW K+ ++ VA+L ++Y PG+ FDP+ L PKD AG +M+TKELNNGRLAMIAT+G+W QELVDG+TI GH+
Sbjct: 42 FKEEMAGATAPFGFFDPVGFSSDADDKKVKKFREAEVKHGRVAMLAFLGLLIQENFHPFFEQGEADLGPASFHLQQVDDKFPLLSLTLFFGIGLVESFTIGRGWSKRDFEDNGFVANLNEEYLPGDLKFDPLNLKPKDAAGLKEMQTKELNNGRLAMIATLGIWGQELVDGQTIAGHF 219
BLAST of mRNA_P-canaliculata_contig10460.630.1 vs. uniprot
Match: A0A835ZAU2_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAU2_9STRA) HSP 1 Score: 178 bits (451), Expect = 6.670e-49 Identity = 91/196 (46.43%), Postives = 129/196 (65.82%), Query Frame = 1
Query: 100 QY-VKTLPGSSPPIRYFDPLDISSKFRAIDVKKFRESEVKHARLAMLAFAGMFVQELA-HPLFDTGARDLGPAIYHFQAISKVFPLMPALLLVNIGILEGNNIFVGWVKQPIQ-----EG-VADLKKDYEPGNFGFDPIGLMPKDEAGQMQMKTKELNNGRLAMIATIGVWAQELVDGKTILGHW--FG*RLLGST 657
QY ++ + G++ P+ ++DPL +++ +++K+RE+E+KH R+AMLA GM VQE HP F T DLGPA +H Q + +P +P LLLV +G +E I GW KQ + EG VA+LK+DY PG+ GFDP+GL P+ E G+ ++ KE+NNGRLAMIA G+WAQELVDG ++ H+ FG G T
Sbjct: 45 QYSLQNMSGATAPVPFWDPLGFAAQVDGQELQKYREAELKHGRVAMLACLGMIVQEAGFHPFFGTAGADLGPAAFHLQKVGVNYPTLPLLLLVGVGAVESFTINKGWSKQDYKSSGLGEGFVANLKEDYFPGDLGFDPLGLYPQSEEGRRSIRNKEINNGRLAMIAIWGMWAQELVDGMSLYEHYQRFGFGPTGQT 240
BLAST of mRNA_P-canaliculata_contig10460.630.1 vs. uniprot
Match: A0A836CA40_9STRA (Light harvesting complex protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA40_9STRA) HSP 1 Score: 173 bits (439), Expect = 3.870e-47 Identity = 83/181 (45.86%), Postives = 120/181 (66.30%), Query Frame = 1
Query: 106 VKTLPGSSPPIRYFDPLDISSKFRAIDVKKFRESEVKHARLAMLAFAGMFVQELAHPLFDTGARDLGPAIYHFQAISKVFPLMPALLLVNIGILEGNNIFVGWVKQPIQEG------VADLKKDYEPGNFGFDPIGLMPKDEAGQMQMKTKELNNGRLAMIATIGVWAQELVDGKTILGHW 630
++ + G++ P+ Y+DPL +SK +++K+RE+E+KH R+AMLA GM VQE HP F+T RD+GPA +H Q + F +P L++ +G++E I GW KQ +E VA+LK+DY PG+ GFDP+GL P + + ++ KELNNGRLAMIA G+WAQELVD T+ H+
Sbjct: 47 LENMSGATSPVPYWDPLGFASKVDDQELQKYREAELKHGRVAMLAALGMIVQENFHPFFNTAGRDIGPAAFHLQKTMEEFSFLPFALVLGVGLVELTTINKGWSKQDYKETGLGAGFVANLKEDYFPGDLGFDPLGLYPTNPRERTNIRNKELNNGRLAMIAIWGMWAQELVDHLTLAEHF 227
BLAST of mRNA_P-canaliculata_contig10460.630.1 vs. uniprot
Match: A0A835YMD9_9STRA (Fucoxanthin chlorophyll a/c protein, LI818 clade n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMD9_9STRA) HSP 1 Score: 166 bits (421), Expect = 9.550e-45 Identity = 80/181 (44.20%), Postives = 115/181 (63.54%), Query Frame = 1
Query: 106 VKTLPGSSPPIRYFDPLDISSKFRAIDVKKFRESEVKHARLAMLAFAGMFVQELAHPLFDTGARDLGPAIYHFQAISKVFPLMPALLLVNIGILEGNNIFVGWVKQPIQEG------VADLKKDYEPGNFGFDPIGLMPKDEAGQMQMKTKELNNGRLAMIATIGVWAQELVDGKTILGHW 630
++ + G++ P+ Y+DP +++K +++K+RE+E+KH R+AMLA GM VQE HP F T RD+GPA +H Q K F +P L+ +G +E I GW + +E VA+LK+DY PG+ GFDP+GL P + ++ KELNNGRLAMIA G+WAQELVDG + H+
Sbjct: 45 LEEMSGATAPVPYWDPAGLAAKVDDQELQKYREAELKHGRVAMLATLGMVVQENFHPFFGTAGRDIGPAAFHLQETMKEFDALPLALVCGVGAVEFLTIDKGWSRSDYKETGLGAGFVANLKEDYFPGDLGFDPLGLYPSSPEERTNIRNKELNNGRLAMIAIWGMWAQELVDGLPLAEHY 225
BLAST of mRNA_P-canaliculata_contig10460.630.1 vs. uniprot
Match: A0A836CGF9_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGF9_9STRA) HSP 1 Score: 165 bits (418), Expect = 1.360e-44 Identity = 81/166 (48.80%), Postives = 114/166 (68.67%), Query Frame = 1
Query: 145 FDPLDISSKFRAIDVKKFRESEVKHARLAMLAFAGMFVQELAHPLFDTGARDLGPAIYHFQAISKVFPLMPALLLVNIGILEGNNIFVGWVKQ-PIQEGVADLKKDYEPGNFGFDPIGLMPKDEAGQMQ-MKTKELNNGRLAMIATIGVWAQELVDGKTILGHWFG 636
FDPL ++SK I++K+++E E+KH R+AMLA G V E+ HPLF + ++GP+I HFQ I + P L + IG+ E +NI+ GWVKQ PI++G+A LK +Y G+FGFDP+ L P E + + M+ KELNNGRLAM A +G+WAQELV+GK + + G
Sbjct: 48 FDPLGLASKVSDIELKRYQECELKHGRVAMLAVLGSLVAEVFHPLFPM-SFEIGPSIRHFQIIEREVPYFWILAMFGIGVFEADNIYRGWVKQDPIRDGIASLKDNYIVGDFGFDPLNLGPTSEPQKFELMRAKELNNGRLAMFAILGIWAQELVNGKGVFENILG 212
BLAST of mRNA_P-canaliculata_contig10460.630.1 vs. uniprot
Match: A0A7S3YG15_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YG15_HETAK) HSP 1 Score: 163 bits (413), Expect = 1.310e-43 Identity = 83/184 (45.11%), Postives = 115/184 (62.50%), Query Frame = 1
Query: 73 DRPMELTGPQYVKTLPGSSPPIRYFDPLDISSKFRAIDVKKFRESEVKHARLAMLAFAGMFVQELAHPLFDTGARDLGPAIYHFQAISKVFPLMPALLLVNIGILEGNNIFVGW--VKQPIQEGVADLKKDYEPGNFGFDPIGLMPKDEAGQMQMKTKELNNGRLAMIATIGVWAQELVDGKTI 618
D P+++ V+ LPG PP+ +FDPL IS +KKFRE+E+KH R+AMLA G+ + E +PLFD + LG IYHFQ ++ P ++L I ++EG I W V+ + +ADL+ DYEPG+ GFDP+GL P D A +M+TKEL NGRLAM+ G+ AQEL+ G+ I
Sbjct: 50 DMPIKMA---LVEDLPGVLPPVGFFDPLGISQGKNENAIKKFREAELKHGRIAMLASVGILLAERFNPLFD--GKILGAGIYHFQQADQLLPYFWVIVLFAIALIEGQTILTAWDSVEDSQNKPIADLRADYEPGDLGFDPLGLAPSDPAALAEMRTKELQNGRLAMLGIAGIVAQELLTGQPI 228
BLAST of mRNA_P-canaliculata_contig10460.630.1 vs. uniprot
Match: D7G7Q9_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q9_ECTSI) HSP 1 Score: 157 bits (398), Expect = 1.550e-41 Identity = 89/183 (48.63%), Postives = 111/183 (60.66%), Query Frame = 1
Query: 94 GPQYVKTLPGSSPPI---RYFDPLDISSKFRAIDVKKFRESEVKHARLAMLAFAGMFVQELAHPLFDTGARDLGPAIYHFQAISKVFPLMPALLLVNIGILEGNNIFVGWVKQPIQEGVADLKKDYEPGNFGFDPIGLMPKDEAGQMQMKTKELNNGRLAMIATIGVWAQELVDGKTILGHWF 633
G YV TLPG+ P + FDPL +S D+KK+RE+E+KH R+AMLA G+ V E HPLF G +GPAI HFQ IS FP A L+ + +E N I + G LK+DY PG+ GFDP+ L P EA MKTKELNNGRLAMI G+ AQELV+G+ IL ++F
Sbjct: 44 GSDYVATLPGA--PFSDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLF-MGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDGEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDILPNFF 223
BLAST of mRNA_P-canaliculata_contig10460.630.1 vs. uniprot
Match: A0A7R9U0X8_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U0X8_9STRA) HSP 1 Score: 156 bits (395), Expect = 3.050e-41 Identity = 83/172 (48.26%), Postives = 111/172 (64.53%), Query Frame = 1
Query: 106 VKTLPGSSPPIRYFDPLDISSKFRAIDVKKFRESEVKHARLAMLAFAGMFVQELAHPLFDTGARDLGPAIYHFQAISKVFPLMPALLLVNIGILEGNNIFVGW--VKQPIQEG--VADLKKDYEPGNFGFDPIGLMPKDEAGQMQMKTKELNNGRLAMIATIGVWAQELVDG 609
+ ++PGSS P FDPL +S+ + +KK++E+E+KH R+AMLA G+ VQE HPLF G GPAI+ FQ + V+PL + +EG I GW +++ G VA LK+DY PG+ GFDP+GL PKDEAG +M+TKELN+ RLAMI G+ AQELV G
Sbjct: 33 LSSIPGSSSPFPGFDPLGLSTDLDDMTLKKYQEAELKHGRIAMLAALGILVQESFHPLF--GGAISGPAIFEFQQVDNVYPLFWVAFGTAVAFVEGTTINQGWESIRETKARGADVAGLKEDYTPGDIGFDPLGLCPKDEAGFAEMRTKELNHCRLAMIGVAGMVAQELVLG 202
BLAST of mRNA_P-canaliculata_contig10460.630.1 vs. uniprot
Match: D7G7Q6_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q6_ECTSI) HSP 1 Score: 153 bits (386), Expect = 7.460e-40 Identity = 84/180 (46.67%), Postives = 108/180 (60.00%), Query Frame = 1
Query: 94 GPQYVKTLPGSSPPI---RYFDPLDISSKFRAIDVKKFRESEVKHARLAMLAFAGMFVQELAHPLFDTGARDLGPAIYHFQAISKVFPLMPALLLVNIGILEGNNIFVGWVKQPIQEGVADLKKDYEPGNFGFDPIGLMPKDEAGQMQMKTKELNNGRLAMIATIGVWAQELVDGKTILG 624
G YV TLPG+ P + FDPL++S D+KK+RE+E+KH R+AMLA G+ V E HPLF G +GPA+ HFQ IS +P L+ + +E N I + G LK+DY PG+ GFDP+ L P+DEA MKTKELNNGRLAMI G+ QEL++ ILG
Sbjct: 44 GSDYVATLPGA--PFGDGKIFDPLNLSDGADPADIKKWREAEIKHGRVAMLASLGVLVAEQYHPLF-MGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKEDYVPGDLGFDPLNLKPEDEAALDVMKTKELNNGRLAMIGIAGMLVQELINPADILG 220 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10460.630.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig10460.630.1 >prot_P-canaliculata_contig10460.630.1 ID=prot_P-canaliculata_contig10460.630.1|Name=mRNA_P-canaliculata_contig10460.630.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=186bp MELTGPQYVKTLPGSSPPIRYFDPLDISSKFRAIDVKKFRESEVKHARLAback to top mRNA from alignment at P-canaliculata_contig10460:5834..8984- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig10460.630.1 ID=mRNA_P-canaliculata_contig10460.630.1|Name=mRNA_P-canaliculata_contig10460.630.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=3151bp|location=Sequence derived from alignment at P-canaliculata_contig10460:5834..8984- (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig10460:5834..8984- >mRNA_P-canaliculata_contig10460.630.1 ID=mRNA_P-canaliculata_contig10460.630.1|Name=mRNA_P-canaliculata_contig10460.630.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1116bp|location=Sequence derived from alignment at P-canaliculata_contig10460:5834..8984- (Pelvetia canaliculata dioecious)back to top |