prot_P-canaliculata_contig103972.547.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-canaliculata_contig103972.547.1
Unique Nameprot_P-canaliculata_contig103972.547.1
Typepolypeptide
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length152
Homology
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BLAST of mRNA_P-canaliculata_contig103972.547.1 vs. uniprot
Match: A0A7X0LLB6_9BACT (Uncharacterized protein n=1 Tax=Algisphaera agarilytica TaxID=1385975 RepID=A0A7X0LLB6_9BACT)

HSP 1 Score: 140 bits (352), Expect = 1.860e-39
Identity = 73/142 (51.41%), Postives = 99/142 (69.72%), Query Frame = 0 
Query:    1 MRIDIHDHRGRPRLRVLVDPANPPSVVHAGAG-GPSIALDWNQAIDDEEQLRHCPVCSHRDLYVRRAVPQVTWFAAVVAVGIVVLLFTYGVRLSAPALGGLLLLLVADLLIWRLSPRMLACYRCDAWFRQTPIPADAKPWNA 141
            MRIDI D++G PRL V VDPANPP+VV A  G GP+I+LDW++A+DD+  LRHCPVC   + Y+++ VPQ+T FA +VA  ++ ++F YG  LS PAL  L ++L  DLLI+  + R L CYRC + F  TP+    K W+A
Sbjct:    1 MRIDIKDNQGNPRLTVHVDPANPPTVVKATDGRGPAISLDWDKALDDKGNLRHCPVCGCPEFYLKKNVPQLTVFALIVAAAVIAMVF-YGFGLSTPALIVLAVVLGLDLLIYLYAKRYLVCYRCQSEFHDTPLLPTDKAWDA 141
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BLAST of mRNA_P-canaliculata_contig103972.547.1 vs. uniprot
Match: A0A3D4Z1U6_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A3D4Z1U6_9DELT)

HSP 1 Score: 55.5 bits (132), Expect = 6.940e-7
Identity = 33/97 (34.02%), Postives = 51/97 (52.58%), Query Frame = 0 
Query:   49 QLRHCPVCSHRDLYVRRAVPQVTWFAAVVAVGIVVLLFTYGVRLSAPALGGLLLLLVADLLIWRLSPRMLACYRCDAWFRQTPIPADAKPWNAARAS 145
            ++ HC VC  + L+ +++  +      +VA GIV+  +TYG+ L   AL         DL +++L P ML CYRCD  FR        KP+N  +A+
Sbjct:   34 EIEHCLVCDSKQLFTQKSFNR-NLGLGIVAAGIVLSFWTYGISLIVVAL--------VDLFLYKLLPPMLVCYRCDGEFRGFKPNPRFKPYNHLKAA 121
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig103972.547.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7X0LLB6_9BACT1.860e-3951.41Uncharacterized protein n=1 Tax=Algisphaera agaril... [more]
A0A3D4Z1U6_9DELT6.940e-734.02Uncharacterized protein n=1 Tax=Deltaproteobacteri... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 96..113
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 114..151
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 70..90
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 91..95
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..69
NoneNo IPR availableTMHMMTMhelixcoord: 92..114
NoneNo IPR availableTMHMMTMhelixcoord: 66..88

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig103972contigP-canaliculata_contig103972:430..885 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig103972.547.1mRNA_P-canaliculata_contig103972.547.1Pelvetia canaliculata dioeciousmRNAP-canaliculata_contig103972 412..885 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-canaliculata_contig103972.547.1 ID=prot_P-canaliculata_contig103972.547.1|Name=mRNA_P-canaliculata_contig103972.547.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=152bp
MRIDIHDHRGRPRLRVLVDPANPPSVVHAGAGGPSIALDWNQAIDDEEQL
RHCPVCSHRDLYVRRAVPQVTWFAAVVAVGIVVLLFTYGVRLSAPALGGL
LLLLVADLLIWRLSPRMLACYRCDAWFRQTPIPADAKPWNAARASAPEPG
R*
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