mRNA_P-canaliculata_contig103972.547.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig103972.547.1
Unique NamemRNA_P-canaliculata_contig103972.547.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
[Close]
BLAST of mRNA_P-canaliculata_contig103972.547.1 vs. uniprot
Match: A0A7X0LLB6_9BACT (Uncharacterized protein n=1 Tax=Algisphaera agarilytica TaxID=1385975 RepID=A0A7X0LLB6_9BACT)

HSP 1 Score: 140 bits (352), Expect = 2.320e-39
Identity = 73/142 (51.41%), Postives = 99/142 (69.72%), Query Frame = 1 
Query:   19 MRIDIHDHRGRPRLRVLVDPANPPSVVHAGAG-GPSIALDWNQAIDDEEQLRHCPVCSHRDLYVRRAVPQVTWFAAVVAVGIVVLLFTYGVRLSAPALGGLLLLLVADLLIWRLSPRMLACYRCDAWFRQTPIPADAKPWNA 441
            MRIDI D++G PRL V VDPANPP+VV A  G GP+I+LDW++A+DD+  LRHCPVC   + Y+++ VPQ+T FA +VA  ++ ++F YG  LS PAL  L ++L  DLLI+  + R L CYRC + F  TP+    K W+A
Sbjct:    1 MRIDIKDNQGNPRLTVHVDPANPPTVVKATDGRGPAISLDWDKALDDKGNLRHCPVCGCPEFYLKKNVPQLTVFALIVAAAVIAMVF-YGFGLSTPALIVLAVVLGLDLLIYLYAKRYLVCYRCQSEFHDTPLLPTDKAWDA 141
[Close]
BLAST of mRNA_P-canaliculata_contig103972.547.1 vs. uniprot
Match: A0A3D4Z1U6_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A3D4Z1U6_9DELT)

HSP 1 Score: 55.5 bits (132), Expect = 7.980e-7
Identity = 33/97 (34.02%), Postives = 51/97 (52.58%), Query Frame = 1 
Query:  163 QLRHCPVCSHRDLYVRRAVPQVTWFAAVVAVGIVVLLFTYGVRLSAPALGGLLLLLVADLLIWRLSPRMLACYRCDAWFRQTPIPADAKPWNAARAS 453
            ++ HC VC  + L+ +++  +      +VA GIV+  +TYG+ L   AL         DL +++L P ML CYRCD  FR        KP+N  +A+
Sbjct:   34 EIEHCLVCDSKQLFTQKSFNR-NLGLGIVAAGIVLSFWTYGISLIVVAL--------VDLFLYKLLPPMLVCYRCDGEFRGFKPNPRFKPYNHLKAA 121
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig103972.547.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7X0LLB6_9BACT2.320e-3951.41Uncharacterized protein n=1 Tax=Algisphaera agaril... [more]
A0A3D4Z1U6_9DELT7.980e-734.02Uncharacterized protein n=1 Tax=Deltaproteobacteri... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig103972contigP-canaliculata_contig103972:412..885 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size474
Cds size456
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815610.2751262-UTR-P-canaliculata_contig103972:411..4291622815610.2751262-UTR-P-canaliculata_contig103972:411..429Pelvetia canaliculata dioeciousUTRP-canaliculata_contig103972 412..429 +
1693494164.79264-UTR-P-canaliculata_contig103972:411..4291693494164.79264-UTR-P-canaliculata_contig103972:411..429Pelvetia canaliculata dioeciousUTRP-canaliculata_contig103972 412..429 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815610.289129-CDS-P-canaliculata_contig103972:429..8851622815610.289129-CDS-P-canaliculata_contig103972:429..885Pelvetia canaliculata dioeciousCDSP-canaliculata_contig103972 430..885 +
1693494164.8092232-CDS-P-canaliculata_contig103972:429..8851693494164.8092232-CDS-P-canaliculata_contig103972:429..885Pelvetia canaliculata dioeciousCDSP-canaliculata_contig103972 430..885 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig103972.547.1prot_P-canaliculata_contig103972.547.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig103972 430..885 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig103972.547.1

>prot_P-canaliculata_contig103972.547.1 ID=prot_P-canaliculata_contig103972.547.1|Name=mRNA_P-canaliculata_contig103972.547.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=152bp
MRIDIHDHRGRPRLRVLVDPANPPSVVHAGAGGPSIALDWNQAIDDEEQL
RHCPVCSHRDLYVRRAVPQVTWFAAVVAVGIVVLLFTYGVRLSAPALGGL
LLLLVADLLIWRLSPRMLACYRCDAWFRQTPIPADAKPWNAARASAPEPG
R*
back to top

mRNA from alignment at P-canaliculata_contig103972:412..885+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig103972.547.1 ID=mRNA_P-canaliculata_contig103972.547.1|Name=mRNA_P-canaliculata_contig103972.547.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=474bp|location=Sequence derived from alignment at P-canaliculata_contig103972:412..885+ (Pelvetia canaliculata dioecious)
TCACCCACAATCCAAGACATGCGGATCGATATCCACGATCATCGCGGCCG
CCCGCGCCTGCGGGTGCTGGTCGATCCGGCCAATCCCCCCAGCGTGGTCC
ACGCGGGCGCCGGCGGTCCGTCGATCGCCCTGGACTGGAACCAGGCGATC
GACGACGAGGAGCAGCTGCGTCACTGCCCCGTGTGCAGCCACCGCGACCT
CTACGTCCGCCGCGCCGTGCCGCAGGTCACCTGGTTCGCCGCGGTCGTCG
CCGTGGGCATTGTGGTCCTGCTGTTCACCTACGGCGTGCGGCTCTCGGCC
CCGGCCCTGGGCGGCCTGCTGCTGCTGCTCGTCGCCGACCTGCTGATCTG
GCGGCTGAGCCCCCGCATGCTCGCCTGTTACCGCTGCGACGCCTGGTTTC
GCCAGACCCCGATCCCCGCCGACGCCAAACCCTGGAACGCCGCCCGGGCC
TCCGCCCCGGAGCCCGGCCGTTGA
back to top

Coding sequence (CDS) from alignment at P-canaliculata_contig103972:412..885+

>mRNA_P-canaliculata_contig103972.547.1 ID=mRNA_P-canaliculata_contig103972.547.1|Name=mRNA_P-canaliculata_contig103972.547.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=912bp|location=Sequence derived from alignment at P-canaliculata_contig103972:412..885+ (Pelvetia canaliculata dioecious)
ATGCGGATCGATATCCACGATCATCGCGGCCGCCCGCGCCTGCGGGTGCT
GGTCGATCCGGCCAATCCCCCCAGCGTGGTCCACGCGGGCGCCGGCGGTC
CGTCGATCGCCCTGGACTGGAACCAGGCGATCGACGACGAGGAGCAGCTG
CGTCACTGCCCCGTGTGCAGCCACCGCGACCTCTACGTCCGCCGCGCCGT
GCCGCAGGTCACCTGGTTCGCCGCGGTCGTCGCCGTGGGCATTGTGGTCC
TGCTGTTCACCTACGGCGTGCGGCTCTCGGCCCCGGCCCTGGGCGGCCTG
CTGCTGCTGCTCGTCGCCGACCTGCTGATCTGGCGGCTGAGCCCCCGCAT
GCTCGCCTGTTACCGCTGCGACGCCTGGTTTCGCCAGACCCCGATCCCCG
CCGACGCCAAACCCTGGAACGCCGCCCGGGCCTCCGCCCCGGAGCCCGGC
CGTTGAATGCGGATCGATATCCACGATCATCGCGGCCGCCCGCGCCTGCG
GGTGCTGGTCGATCCGGCCAATCCCCCCAGCGTGGTCCACGCGGGCGCCG
GCGGTCCGTCGATCGCCCTGGACTGGAACCAGGCGATCGACGACGAGGAG
CAGCTGCGTCACTGCCCCGTGTGCAGCCACCGCGACCTCTACGTCCGCCG
CGCCGTGCCGCAGGTCACCTGGTTCGCCGCGGTCGTCGCCGTGGGCATTG
TGGTCCTGCTGTTCACCTACGGCGTGCGGCTCTCGGCCCCGGCCCTGGGC
GGCCTGCTGCTGCTGCTCGTCGCCGACCTGCTGATCTGGCGGCTGAGCCC
CCGCATGCTCGCCTGTTACCGCTGCGACGCCTGGTTTCGCCAGACCCCGA
TCCCCGCCGACGCCAAACCCTGGAACGCCGCCCGGGCCTCCGCCCCGGAG
CCCGGCCGTTGA
back to top