prot_P-canaliculata_contig10380.527.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-canaliculata_contig10380.527.1
Unique Nameprot_P-canaliculata_contig10380.527.1
Typepolypeptide
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length192
Homology
BLAST of mRNA_P-canaliculata_contig10380.527.1 vs. uniprot
Match: A0A6H5JI65_9PHAE (RRF domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JI65_9PHAE)

HSP 1 Score: 276 bits (707), Expect = 1.420e-91
Identity = 152/191 (79.58%), Postives = 172/191 (90.05%), Query Frame = 0
Query:    1 MADGEFDEKATMASAQEKMEKSTESVQNSLETLRTGRASPKVLDRVTVECYGVDTPLNQVASVKTSSATQLLVESYDAAILDDIATAIQESDVGLTPNNDGSVIRLNLPPVTEERRKELAKEAKALGEEGKVAIRNIRRDAVEAVKKAQKSKSLGKDQSKDAQDAIQKLTDKFAKVIDEKVAAKEKDILKV 191
            MA  EFD  A +ASAQE+M+KS ESV+ +LETLRTGRA+PK+LDRV VECYG +TPLNQVASVKT+SAT LLVESYD  IL DIA AIQE+D+GLTPNNDG+VIRLN+PPVTE+RRKELAKEAK+LGEEGKVAIRNIRR+AV+ VKKA+K+K+LGKDQSKD QDAIQKLTDK  K IDEKVAAKEKDILKV
Sbjct:   61 MAADEFDGDAVLASAQERMDKSVESVRLNLETLRTGRANPKILDRVVVECYGAETPLNQVASVKTTSATALLVESYDPTILADIAAAIQEADLGLTPNNDGTVIRLNMPPVTEDRRKELAKEAKSLGEEGKVAIRNIRREAVDTVKKAEKAKNLGKDQSKDVQDAIQKLTDKTTKTIDEKVAAKEKDILKV 251          
BLAST of mRNA_P-canaliculata_contig10380.527.1 vs. uniprot
Match: A0A836CN93_9STRA (Ribosome recycling factor domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN93_9STRA)

HSP 1 Score: 204 bits (520), Expect = 2.850e-64
Identity = 112/173 (64.74%), Postives = 136/173 (78.61%), Query Frame = 0
Query:   19 MEKSTESVQNSLETLRTGRASPKVLDRVTVECYGVDTPLNQVASVKTSSATQLLVESYDAAILDDIATAIQESDVGLTPNNDGSVIRLNLPPVTEERRKELAKEAKALGEEGKVAIRNIRRDAVEAVKKAQKSKSLGKDQSKDAQDAIQKLTDKFAKVIDEKVAAKEKDILKV 191
            M+KS +  + +L TLRTGRASP +LDRV V+ YG  TPL  +A+VKTSSATQL+VE YD + L  I   I ES VGL PNNDG VIRLN+P VTE+RRKEL KEA+ALGEEGKVA+RNIRRD VE +KKA+KSK + +DQSK+    IQK+TDK+AK++DE VA KEKDI+ V
Sbjct:    1 MQKSVDKCRENLATLRTGRASPGILDRVFVDYYGTPTPLKGLAAVKTSSATQLMVEPYDRSSLSAIERGILESGVGLNPNNDGQVIRLNIPAVTEDRRKELCKEARALGEEGKVAVRNIRRDVVEVIKKAEKSKEISQDQSKNTSGDIQKITDKYAKMVDEAVATKEKDIMTV 173          
BLAST of mRNA_P-canaliculata_contig10380.527.1 vs. uniprot
Match: A0A7S2S100_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S100_9STRA)

HSP 1 Score: 200 bits (509), Expect = 1.120e-61
Identity = 110/179 (61.45%), Postives = 138/179 (77.09%), Query Frame = 0
Query:   15 AQEKMEKSTESVQNSLETLRTGRASPKVLDRVTVECYGVDTPLNQVASVKTSSATQLLVESYDAAILDDIATAIQESDVGLTPNNDGSVIRLNLPPVTEERRKELAKEAKALGEEGKVAIRNIRRDAVEAVKKAQKSKSLG--KDQSKDAQDAIQKLTDKFAKVIDEKVAAKEKDILKV 191
            A+ KM+KS ESVQ +L TLRTGRA+P +LDRV V+ YG  TPLNQVAS+  SS T L+V+ YD + L D+  AI ESD+G+ P+NDG  IRLN+P +TEERRKEL K AK+LGE+GKVA+RN+RRDAV+++KK  K K  G  +D  KD+ D+IQKLTDK+ K +DE VA KEKDI KV
Sbjct:   62 AEVKMKKSVESVQTNLNTLRTGRANPSLLDRVQVDYYGTPTPLNQVASISVSSGTSLIVDPYDKSSLGDVEKAIMESDIGIVPSNDGEKIRLNIPSLTEERRKELMKTAKSLGEDGKVALRNVRRDAVDSIKKLAKDKDAGVSEDSVKDSTDSIQKLTDKYVKEVDEVVAGKEKDISKV 240          
BLAST of mRNA_P-canaliculata_contig10380.527.1 vs. uniprot
Match: B7GAC1_PHATC (Predicted protein n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7GAC1_PHATC)

HSP 1 Score: 194 bits (493), Expect = 1.870e-59
Identity = 101/177 (57.06%), Postives = 141/177 (79.66%), Query Frame = 0
Query:   15 AQEKMEKSTESVQNSLETLRTGRASPKVLDRVTVECYGVDTPLNQVASVKTSSATQLLVESYDAAILDDIATAIQESDVGLTPNNDGSVIRLNLPPVTEERRKELAKEAKALGEEGKVAIRNIRRDAVEAVKKAQKSKSLGKDQSKDAQDAIQKLTDKFAKVIDEKVAAKEKDILKV 191
            A ++M KS +SV+ +L+++RTGRAS ++LDRV V+ YGV+TPLNQ+A++   SA QL ++ YD   L++I TAI ESD+GLT NNDGS+IR+N+P +TE+RRKE+ K  K++GEEGKVA+RNIRRD ++ +KK +KS  +G+D+ KD QD +QKLTDK  K IDE V AKEK+++KV
Sbjct:   49 ASDRMAKSVDSVRLNLQSVRTGRASAQILDRVKVDYYGVETPLNQMATISVPSAQQLSIDPYDKTSLNNIETAIVESDLGLTTNNDGSIIRINIPSMTEDRRKEMLKLCKSIGEEGKVAVRNIRRDGLDTIKKMEKSSDIGEDEMKDGQDTMQKLTDKNVKEIDEVVGAKEKEVMKV 225          
BLAST of mRNA_P-canaliculata_contig10380.527.1 vs. uniprot
Match: A0A7S2JZ54_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JZ54_9STRA)

HSP 1 Score: 193 bits (491), Expect = 4.250e-59
Identity = 100/176 (56.82%), Postives = 138/176 (78.41%), Query Frame = 0
Query:   16 QEKMEKSTESVQNSLETLRTGRASPKVLDRVTVECYGVDTPLNQVASVKTSSATQLLVESYDAAILDDIATAIQESDVGLTPNNDGSVIRLNLPPVTEERRKELAKEAKALGEEGKVAIRNIRRDAVEAVKKAQKSKSLGKDQSKDAQDAIQKLTDKFAKVIDEKVAAKEKDILKV 191
            +E+M+KS +SV  +L+T+ TGRA+P +LDR+  + YG  TP+NQ+AS+   SA+QL ++ YD + L DI  AI  SD+G+TP NDGSVIR+N+P +TEERRKEL K+ K +GEEGKVA+RN+RRD V+ +KK +K+ ++G+DQSK+ QD IQK+TDK+ K IDE VA KEKD+ KV
Sbjct:   54 EERMQKSCDSVVRNLQTISTGRANPAMLDRIQADYYGAPTPINQMASISVPSASQLQIDPYDKSSLSDIEKAIIISDLGMTPQNDGSVIRINIPALTEERRKELLKKCKGIGEEGKVAVRNVRRDGVDKIKKLEKASTIGEDQSKEGQDDIQKMTDKYVKDIDEIVAKKEKDVSKV 229          
BLAST of mRNA_P-canaliculata_contig10380.527.1 vs. uniprot
Match: A0A7S4EEJ6_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EEJ6_9STRA)

HSP 1 Score: 192 bits (487), Expect = 1.660e-58
Identity = 101/177 (57.06%), Postives = 136/177 (76.84%), Query Frame = 0
Query:   15 AQEKMEKSTESVQNSLETLRTGRASPKVLDRVTVECYGVDTPLNQVASVKTSSATQLLVESYDAAILDDIATAIQESDVGLTPNNDGSVIRLNLPPVTEERRKELAKEAKALGEEGKVAIRNIRRDAVEAVKKAQKSKSLGKDQSKDAQDAIQKLTDKFAKVIDEKVAAKEKDILKV 191
            A ++MEKS ESV  ++ T+RTGRASP +LDRV  + YG +TP+NQ+AS+   SA QL VE +D ++L D+  AI ESDVGLTP NDG+VIRLN+P +TE+RRKE+ K+ KA+GEEGKVA+RNIRR AV+++KK +K   + +D+SK +QD IQK+TD+  K ID  V  KE D++KV
Sbjct:   52 AMDRMEKSIESVMQNMNTIRTGRASPAILDRVKCDYYGTETPINQMASISVPSAQQLTVEPFDKSMLGDVERAIMESDVGLTPMNDGTVIRLNIPSLTEDRRKEMMKQCKAIGEEGKVAVRNIRRKAVDSIKKLEKDSDISEDESKSSQDDIQKMTDEKVKEIDGIVEKKENDVMKV 228          
BLAST of mRNA_P-canaliculata_contig10380.527.1 vs. uniprot
Match: A0A5J4Z4W6_PORPP (Ribosome-recycling factor n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z4W6_PORPP)

HSP 1 Score: 192 bits (487), Expect = 2.330e-58
Identity = 100/180 (55.56%), Postives = 137/180 (76.11%), Query Frame = 0
Query:   12 MASAQEKMEKSTESVQNSLETLRTGRASPKVLDRVTVECYGVDTPLNQVASVKTSSATQLLVESYDAAILDDIATAIQESDVGLTPNNDGSVIRLNLPPVTEERRKELAKEAKALGEEGKVAIRNIRRDAVEAVKKAQKSKSLGKDQSKDAQDAIQKLTDKFAKVIDEKVAAKEKDILKV 191
            +A+A+E+M KS ++V  S  T+RTGRA+P VLDRV V  +GV+TPL Q+ASV T S+T L VE +D + + D+  AI ESD+G+TP  DGS +RLN+P +T+ERRKE  K+ K L E+G+VA+RNIRRD VE +KK +K   +GKD+SKD QD IQKLTDK+ K++D  +A KEK+++KV
Sbjct:   60 VANAEERMSKSMDAVGQSFNTIRTGRANPAVLDRVVVSYWGVETPLKQLASVSTPSSTVLQVEVFDPSCVKDVERAIMESDLGMTPQTDGSTLRLNVPALTQERRKEFVKQLKQLAEDGRVAVRNIRRDIVEKIKKMEKDSEIGKDESKDGQDRIQKLTDKYVKMVDNALAEKEKEVMKV 239          
BLAST of mRNA_P-canaliculata_contig10380.527.1 vs. uniprot
Match: RRF_CROS5 (Ribosome-recycling factor n=9 Tax=Oscillatoriophycideae TaxID=1301283 RepID=RRF_CROS5)

HSP 1 Score: 189 bits (481), Expect = 3.180e-58
Identity = 101/175 (57.71%), Postives = 132/175 (75.43%), Query Frame = 0
Query:   17 EKMEKSTESVQNSLETLRTGRASPKVLDRVTVECYGVDTPLNQVASVKTSSATQLLVESYDAAILDDIATAIQESDVGLTPNNDGSVIRLNLPPVTEERRKELAKEAKALGEEGKVAIRNIRRDAVEAVKKAQKSKSLGKDQSKDAQDAIQKLTDKFAKVIDEKVAAKEKDILKV 191
            E M+KS E+ Q S  T+RTGRA+  +LDRVTVE YG +TPL Q+A++ T  AT ++++ YD   +  I  AIQ SDVGLTPNNDG VIRLN+PP+TEERRK+L K A  + EEGKVAIRNIRRDA++ V+K +K+  + +D+S+  QD IQK+TD+F   IDE +AAKEKDI+ V
Sbjct:    8 ENMQKSVEATQRSFNTIRTGRANASILDRVTVEYYGTETPLYQLANISTPDATTIMIQPYDKGSMGQIEKAIQMSDVGLTPNNDGQVIRLNIPPLTEERRKDLVKLASKMAEEGKVAIRNIRRDAIDDVRKQEKNSDISEDESRGLQDDIQKVTDQFTDKIDELLAAKEKDIMTV 182          
BLAST of mRNA_P-canaliculata_contig10380.527.1 vs. uniprot
Match: A0A7S4D6T5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D6T5_HETAK)

HSP 1 Score: 191 bits (484), Expect = 7.250e-58
Identity = 108/191 (56.54%), Postives = 136/191 (71.20%), Query Frame = 0
Query:    1 MADGEFDEKATMASAQEKMEKSTESVQNSLETLRTGRASPKVLDRVTVECYGVDTPLNQVASVKTSSATQLLVESYDAAILDDIATAIQESDVGLTPNNDGSVIRLNLPPVTEERRKELAKEAKALGEEGKVAIRNIRRDAVEAVKKAQKSKSLGKDQSKDAQDAIQKLTDKFAKVIDEKVAAKEKDILKV 191
            M  G+FD K  M  A+++M+KS ES+ ++L T+RTGRASP +LDRV V  Y V+TPLNQ+A + TSSATQL+V  YD + L DI  AI ES +GLTPNNDG VIRLN+PP+TEERRKEL+K+AKA+GEEGKVA+RNIRRD V+ VKKA+K+  L K                    +DE VA KE DI+K+
Sbjct:   52 MEAGDFDTKGLMKDAEKRMKKSLESLVDNLNTIRTGRASPAILDRVNVMYYEVETPLNQLAGISTSSATQLVVSPYDKSALKDIERAILESGIGLTPNNDGDVIRLNIPPLTEERRKELSKDAKAIGEEGKVAVRNIRRDVVDKVKKAEKANDLSKXXXXXXXXXXXXXXXXXXXXVDEVVAEKEADIMKI 242          
BLAST of mRNA_P-canaliculata_contig10380.527.1 vs. uniprot
Match: A0A7S1C109_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1C109_9STRA)

HSP 1 Score: 191 bits (485), Expect = 1.050e-57
Identity = 102/177 (57.63%), Postives = 138/177 (77.97%), Query Frame = 0
Query:   15 AQEKMEKSTESVQNSLETLRTGRASPKVLDRVTVECYGVDTPLNQVASVKTSSATQLLVESYDAAILDDIATAIQESDVGLTPNNDGSVIRLNLPPVTEERRKELAKEAKALGEEGKVAIRNIRRDAVEAVKKAQKSKSLGKDQSKDAQDAIQKLTDKFAKVIDEKVAAKEKDILKV 191
            A+ +M+KST+ +Q +L+T+RTGRA+  +LDRVTV+ YG  TPLN +AS+   S++QLLV+ YD   L DI  AI E+ +GL PNNDGS IRLN+P +TEERRKEL K+ KA+GEEGKV +RNIRR AVE++KK +K+  + KDQS DAQ+++QKLTD   K I+E V+ KEK+++KV
Sbjct:   90 AKVRMKKSTDVLQQNLQTIRTGRANAAILDRVTVDYYGEPTPLNSLASISVPSSSQLLVDPYDKTSLGDIERAIVEASLGLNPNNDGSAIRLNIPALTEERRKELMKQVKAMGEEGKVGVRNIRRGAVESIKKLEKASDISKDQSMDAQESVQKLTDSTIKNIEEVVSKKEKEVMKV 266          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10380.527.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JI65_9PHAE1.420e-9179.58RRF domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A836CN93_9STRA2.850e-6464.74Ribosome recycling factor domain-containing protei... [more]
A0A7S2S100_9STRA1.120e-6161.45Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
B7GAC1_PHATC1.870e-5957.06Predicted protein n=3 Tax=Phaeodactylum tricornutu... [more]
A0A7S2JZ54_9STRA4.250e-5956.82Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S4EEJ6_9STRA1.660e-5857.06Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A5J4Z4W6_PORPP2.330e-5855.56Ribosome-recycling factor n=1 Tax=Porphyridium pur... [more]
RRF_CROS53.180e-5857.71Ribosome-recycling factor n=9 Tax=Oscillatoriophyc... [more]
A0A7S4D6T5_HETAK7.250e-5856.54Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S1C109_9STRA1.050e-5757.63Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 159..186
NoneNo IPR availableGENE3D1.10.132.20coord: 18..188
e-value: 4.3E-60
score: 204.1
NoneNo IPR availableGENE3D3.30.1360.40coord: 37..111
e-value: 4.3E-60
score: 204.1
IPR002661Ribosome recycling factorTIGRFAMTIGR00496TIGR00496coord: 16..191
e-value: 1.2E-63
score: 211.9
IPR002661Ribosome recycling factorPANTHERPTHR20982RIBOSOME RECYCLING FACTORcoord: 8..190
IPR002661Ribosome recycling factorHAMAPMF_00040RRFcoord: 9..191
score: 24.545
IPR023584Ribosome recycling factor domainPFAMPF01765RRFcoord: 27..189
e-value: 5.3E-57
score: 192.3
IPR036191RRF superfamilySUPERFAMILY55194Ribosome recycling factor, RRFcoord: 12..190

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig10380contigP-canaliculata_contig10380:2997..6668 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig10380.527.1mRNA_P-canaliculata_contig10380.527.1Pelvetia canaliculata dioeciousmRNAP-canaliculata_contig10380 2102..6760 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-canaliculata_contig10380.527.1 ID=prot_P-canaliculata_contig10380.527.1|Name=mRNA_P-canaliculata_contig10380.527.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=192bp
MADGEFDEKATMASAQEKMEKSTESVQNSLETLRTGRASPKVLDRVTVEC
YGVDTPLNQVASVKTSSATQLLVESYDAAILDDIATAIQESDVGLTPNND
GSVIRLNLPPVTEERRKELAKEAKALGEEGKVAIRNIRRDAVEAVKKAQK
SKSLGKDQSKDAQDAIQKLTDKFAKVIDEKVAAKEKDILKV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002661Ribosome_recyc_fac
IPR023584Ribosome_recyc_fac_dom
IPR036191RRF_sf