mRNA_P-canaliculata_contig10380.527.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig10380.527.1
Unique NamemRNA_P-canaliculata_contig10380.527.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig10380.527.1 vs. uniprot
Match: A0A6H5JI65_9PHAE (RRF domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JI65_9PHAE)

HSP 1 Score: 286 bits (733), Expect = 1.210e-90
Identity = 159/202 (78.71%), Postives = 181/202 (89.60%), Query Frame = 3 
Query:   60 AHRVRASSALKMADGEFDEKATMASAQEKMEKSTESVQNSLETLRTGRASPKVLDRVTVECYGVDTPLNQVASVKTSSATQLLVESYDAAILDDIATAIQESDVGLTPNNDGSVIRLNLPPVTEERRKELAKEAKALGEEGKVAIRNIRRDAVEAVKKAQKSKSLGKDQSKDAQDAIQKLTDKFAKVIDEKVAAKEKDILKV 665
            A R+R SS+LKMA  EFD  A +ASAQE+M+KS ESV+ +LETLRTGRA+PK+LDRV VECYG +TPLNQVASVKT+SAT LLVESYD  IL DIA AIQE+D+GLTPNNDG+VIRLN+PPVTE+RRKELAKEAK+LGEEGKVAIRNIRR+AV+ VKKA+K+K+LGKDQSKD QDAIQKLTDK  K IDEKVAAKEKDILKV
Sbjct:   50 APRLRWSSSLKMAADEFDGDAVLASAQERMDKSVESVRLNLETLRTGRANPKILDRVVVECYGAETPLNQVASVKTTSATALLVESYDPTILADIAAAIQEADLGLTPNNDGTVIRLNMPPVTEDRRKELAKEAKSLGEEGKVAIRNIRREAVDTVKKAEKAKNLGKDQSKDVQDAIQKLTDKTTKTIDEKVAAKEKDILKV 251
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BLAST of mRNA_P-canaliculata_contig10380.527.1 vs. uniprot
Match: A0A836CN93_9STRA (Ribosome recycling factor domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN93_9STRA)

HSP 1 Score: 205 bits (522), Expect = 2.770e-60
Identity = 112/173 (64.74%), Postives = 136/173 (78.61%), Query Frame = 3 
Query:  147 MEKSTESVQNSLETLRTGRASPKVLDRVTVECYGVDTPLNQVASVKTSSATQLLVESYDAAILDDIATAIQESDVGLTPNNDGSVIRLNLPPVTEERRKELAKEAKALGEEGKVAIRNIRRDAVEAVKKAQKSKSLGKDQSKDAQDAIQKLTDKFAKVIDEKVAAKEKDILKV 665
            M+KS +  + +L TLRTGRASP +LDRV V+ YG  TPL  +A+VKTSSATQL+VE YD + L  I   I ES VGL PNNDG VIRLN+P VTE+RRKEL KEA+ALGEEGKVA+RNIRRD VE +KKA+KSK + +DQSK+    IQK+TDK+AK++DE VA KEKDI+ V
Sbjct:    1 MQKSVDKCRENLATLRTGRASPGILDRVFVDYYGTPTPLKGLAAVKTSSATQLMVEPYDRSSLSAIERGILESGVGLNPNNDGQVIRLNIPAVTEDRRKELCKEARALGEEGKVAVRNIRRDVVEVIKKAEKSKEISQDQSKNTSGDIQKITDKYAKMVDEAVATKEKDIMTV 173
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BLAST of mRNA_P-canaliculata_contig10380.527.1 vs. uniprot
Match: A0A7S2JZ54_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JZ54_9STRA)

HSP 1 Score: 201 bits (510), Expect = 9.850e-58
Identity = 113/217 (52.07%), Postives = 161/217 (74.19%), Query Frame = 3 
Query:   15 LALAQASSYASSTFPAHRVRASSALKMADGEFDEKATMASAQEKMEKSTESVQNSLETLRTGRASPKVLDRVTVECYGVDTPLNQVASVKTSSATQLLVESYDAAILDDIATAIQESDVGLTPNNDGSVIRLNLPPVTEERRKELAKEAKALGEEGKVAIRNIRRDAVEAVKKAQKSKSLGKDQSKDAQDAIQKLTDKFAKVIDEKVAAKEKDILKV 665
            L + QAS++ +++F    V +++ L MA+ E DE A     +E+M+KS +SV  +L+T+ TGRA+P +LDR+  + YG  TP+NQ+AS+   SA+QL ++ YD + L DI  AI  SD+G+TP NDGSVIR+N+P +TEERRKEL K+ K +GEEGKVA+RN+RRD V+ +KK +K+ ++G+DQSK+ QD IQK+TDK+ K IDE VA KEKD+ KV
Sbjct:   16 LVINQASAFTTNSFGVRSVSSNTCLFMAE-EVDEIAL--EIEERMQKSCDSVVRNLQTISTGRANPAMLDRIQADYYGAPTPINQMASISVPSASQLQIDPYDKSSLSDIEKAIIISDLGMTPQNDGSVIRINIPALTEERRKELLKKCKGIGEEGKVAVRNVRRDGVDKIKKLEKASTIGEDQSKEGQDDIQKMTDKYVKDIDEIVAKKEKDVSKV 229
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BLAST of mRNA_P-canaliculata_contig10380.527.1 vs. uniprot
Match: A0A7S2S100_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S100_9STRA)

HSP 1 Score: 201 bits (511), Expect = 9.880e-58
Identity = 110/179 (61.45%), Postives = 138/179 (77.09%), Query Frame = 3 
Query:  135 AQEKMEKSTESVQNSLETLRTGRASPKVLDRVTVECYGVDTPLNQVASVKTSSATQLLVESYDAAILDDIATAIQESDVGLTPNNDGSVIRLNLPPVTEERRKELAKEAKALGEEGKVAIRNIRRDAVEAVKKAQKSKSLG--KDQSKDAQDAIQKLTDKFAKVIDEKVAAKEKDILKV 665
            A+ KM+KS ESVQ +L TLRTGRA+P +LDRV V+ YG  TPLNQVAS+  SS T L+V+ YD + L D+  AI ESD+G+ P+NDG  IRLN+P +TEERRKEL K AK+LGE+GKVA+RN+RRDAV+++KK  K K  G  +D  KD+ D+IQKLTDK+ K +DE VA KEKDI KV
Sbjct:   62 AEVKMKKSVESVQTNLNTLRTGRANPSLLDRVQVDYYGTPTPLNQVASISVSSGTSLIVDPYDKSSLGDVEKAIMESDIGIVPSNDGEKIRLNIPSLTEERRKELMKTAKSLGEDGKVALRNVRRDAVDSIKKLAKDKDAGVSEDSVKDSTDSIQKLTDKYVKEVDEVVAGKEKDISKV 240
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BLAST of mRNA_P-canaliculata_contig10380.527.1 vs. uniprot
Match: B7GAC1_PHATC (Predicted protein n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7GAC1_PHATC)

HSP 1 Score: 195 bits (495), Expect = 1.410e-55
Identity = 101/177 (57.06%), Postives = 141/177 (79.66%), Query Frame = 3 
Query:  135 AQEKMEKSTESVQNSLETLRTGRASPKVLDRVTVECYGVDTPLNQVASVKTSSATQLLVESYDAAILDDIATAIQESDVGLTPNNDGSVIRLNLPPVTEERRKELAKEAKALGEEGKVAIRNIRRDAVEAVKKAQKSKSLGKDQSKDAQDAIQKLTDKFAKVIDEKVAAKEKDILKV 665
            A ++M KS +SV+ +L+++RTGRAS ++LDRV V+ YGV+TPLNQ+A++   SA QL ++ YD   L++I TAI ESD+GLT NNDGS+IR+N+P +TE+RRKE+ K  K++GEEGKVA+RNIRRD ++ +KK +KS  +G+D+ KD QD +QKLTDK  K IDE V AKEK+++KV
Sbjct:   49 ASDRMAKSVDSVRLNLQSVRTGRASAQILDRVKVDYYGVETPLNQMATISVPSAQQLSIDPYDKTSLNNIETAIVESDLGLTTNNDGSIIRINIPSMTEDRRKEMLKLCKSIGEEGKVAVRNIRRDGLDTIKKMEKSSDIGEDEMKDGQDTMQKLTDKNVKEIDEVVGAKEKEVMKV 225
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BLAST of mRNA_P-canaliculata_contig10380.527.1 vs. uniprot
Match: A0A7S4D6T5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D6T5_HETAK)

HSP 1 Score: 193 bits (491), Expect = 9.210e-55
Identity = 109/193 (56.48%), Postives = 137/193 (70.98%), Query Frame = 3 
Query:   87 LKMADGEFDEKATMASAQEKMEKSTESVQNSLETLRTGRASPKVLDRVTVECYGVDTPLNQVASVKTSSATQLLVESYDAAILDDIATAIQESDVGLTPNNDGSVIRLNLPPVTEERRKELAKEAKALGEEGKVAIRNIRRDAVEAVKKAQKSKSLGKDQSKDAQDAIQKLTDKFAKVIDEKVAAKEKDILKV 665
            L M  G+FD K  M  A+++M+KS ES+ ++L T+RTGRASP +LDRV V  Y V+TPLNQ+A + TSSATQL+V  YD + L DI  AI ES +GLTPNNDG VIRLN+PP+TEERRKEL+K+AKA+GEEGKVA+RNIRRD V+ VKKA+K+  L K                    +DE VA KE DI+K+
Sbjct:   50 LSMEAGDFDTKGLMKDAEKRMKKSLESLVDNLNTIRTGRASPAILDRVNVMYYEVETPLNQLAGISTSSATQLVVSPYDKSALKDIERAILESGIGLTPNNDGDVIRLNIPPLTEERRKELSKDAKAIGEEGKVAVRNIRRDVVDKVKKAEKANDLSKXXXXXXXXXXXXXXXXXXXXVDEVVAEKEADIMKI 242
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BLAST of mRNA_P-canaliculata_contig10380.527.1 vs. uniprot
Match: A0A7S4EEJ6_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EEJ6_9STRA)

HSP 1 Score: 192 bits (489), Expect = 1.180e-54
Identity = 101/177 (57.06%), Postives = 136/177 (76.84%), Query Frame = 3 
Query:  135 AQEKMEKSTESVQNSLETLRTGRASPKVLDRVTVECYGVDTPLNQVASVKTSSATQLLVESYDAAILDDIATAIQESDVGLTPNNDGSVIRLNLPPVTEERRKELAKEAKALGEEGKVAIRNIRRDAVEAVKKAQKSKSLGKDQSKDAQDAIQKLTDKFAKVIDEKVAAKEKDILKV 665
            A ++MEKS ESV  ++ T+RTGRASP +LDRV  + YG +TP+NQ+AS+   SA QL VE +D ++L D+  AI ESDVGLTP NDG+VIRLN+P +TE+RRKE+ K+ KA+GEEGKVA+RNIRR AV+++KK +K   + +D+SK +QD IQK+TD+  K ID  V  KE D++KV
Sbjct:   52 AMDRMEKSIESVMQNMNTIRTGRASPAILDRVKCDYYGTETPINQMASISVPSAQQLTVEPFDKSMLGDVERAIMESDVGLTPMNDGTVIRLNIPSLTEDRRKEMMKQCKAIGEEGKVAVRNIRRKAVDSIKKLEKDSDISEDESKSSQDDIQKMTDEKVKEIDGIVEKKENDVMKV 228
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BLAST of mRNA_P-canaliculata_contig10380.527.1 vs. uniprot
Match: A0A5J4Z4W6_PORPP (Ribosome-recycling factor n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z4W6_PORPP)

HSP 1 Score: 192 bits (489), Expect = 1.650e-54
Identity = 100/180 (55.56%), Postives = 137/180 (76.11%), Query Frame = 3 
Query:  126 MASAQEKMEKSTESVQNSLETLRTGRASPKVLDRVTVECYGVDTPLNQVASVKTSSATQLLVESYDAAILDDIATAIQESDVGLTPNNDGSVIRLNLPPVTEERRKELAKEAKALGEEGKVAIRNIRRDAVEAVKKAQKSKSLGKDQSKDAQDAIQKLTDKFAKVIDEKVAAKEKDILKV 665
            +A+A+E+M KS ++V  S  T+RTGRA+P VLDRV V  +GV+TPL Q+ASV T S+T L VE +D + + D+  AI ESD+G+TP  DGS +RLN+P +T+ERRKE  K+ K L E+G+VA+RNIRRD VE +KK +K   +GKD+SKD QD IQKLTDK+ K++D  +A KEK+++KV
Sbjct:   60 VANAEERMSKSMDAVGQSFNTIRTGRANPAVLDRVVVSYWGVETPLKQLASVSTPSSTVLQVEVFDPSCVKDVERAIMESDLGMTPQTDGSTLRLNVPALTQERRKEFVKQLKQLAEDGRVAVRNIRRDIVEKIKKMEKDSEIGKDESKDGQDRIQKLTDKYVKMVDNALAEKEKEVMKV 239
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BLAST of mRNA_P-canaliculata_contig10380.527.1 vs. uniprot
Match: RRF_CROS5 (Ribosome-recycling factor n=9 Tax=Oscillatoriophycideae TaxID=1301283 RepID=RRF_CROS5)

HSP 1 Score: 190 bits (483), Expect = 2.120e-54
Identity = 101/175 (57.71%), Postives = 132/175 (75.43%), Query Frame = 3 
Query:  141 EKMEKSTESVQNSLETLRTGRASPKVLDRVTVECYGVDTPLNQVASVKTSSATQLLVESYDAAILDDIATAIQESDVGLTPNNDGSVIRLNLPPVTEERRKELAKEAKALGEEGKVAIRNIRRDAVEAVKKAQKSKSLGKDQSKDAQDAIQKLTDKFAKVIDEKVAAKEKDILKV 665
            E M+KS E+ Q S  T+RTGRA+  +LDRVTVE YG +TPL Q+A++ T  AT ++++ YD   +  I  AIQ SDVGLTPNNDG VIRLN+PP+TEERRK+L K A  + EEGKVAIRNIRRDA++ V+K +K+  + +D+S+  QD IQK+TD+F   IDE +AAKEKDI+ V
Sbjct:    8 ENMQKSVEATQRSFNTIRTGRANASILDRVTVEYYGTETPLYQLANISTPDATTIMIQPYDKGSMGQIEKAIQMSDVGLTPNNDGQVIRLNIPPLTEERRKDLVKLASKMAEEGKVAIRNIRRDAIDDVRKQEKNSDISEDESRGLQDDIQKVTDQFTDKIDELLAAKEKDIMTV 182
[Close]
BLAST of mRNA_P-canaliculata_contig10380.527.1 vs. uniprot
Match: A0A1E7F508_9STRA (Ribosome releasing factor n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F508_9STRA)

HSP 1 Score: 191 bits (484), Expect = 5.660e-54
Identity = 107/199 (53.77%), Postives = 149/199 (74.87%), Query Frame = 3 
Query:   69 VRASSALKMADGEFDEKATMASAQEKMEKSTESVQNSLETLRTGRASPKVLDRVTVECYGVDTPLNQVASVKTSSATQLLVESYDAAILDDIATAIQESDVGLTPNNDGSVIRLNLPPVTEERRKELAKEAKALGEEGKVAIRNIRRDAVEAVKKAQKSKSLGKDQSKDAQDAIQKLTDKFAKVIDEKVAAKEKDILKV 665
            VRA+  L MA+    E+ T A A +KM+KS +S+  ++ ++RTGRASP +LDRV  + YG +TP++Q+A++   SA QL+V+ +D   L DI  AI ++D+GLTP NDGSVIRLN+P +TE+RRKE+ K+ KA+GEEGKVAIRNIRR AVE +KK +KS  +G+D+SK AQD IQK+TDK  K +D+ V  KEK+++ V
Sbjct:   27 VRATPVLFMAETVTVEE-TNADATDKMKKSIDSLYLNMNSVRTGRASPAILDRVRAQYYGTETPISQMATISVPSAQQLMVDPFDKTALGDIERAIVDADIGLTPQNDGSVIRLNIPALTEDRRKEMMKQCKAIGEEGKVAIRNIRRKAVETIKKLEKSSDIGEDESKMAQDKIQKMTDKNVKEVDDIVDRKEKEVMTV 224
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10380.527.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JI65_9PHAE1.210e-9078.71RRF domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A836CN93_9STRA2.770e-6064.74Ribosome recycling factor domain-containing protei... [more]
A0A7S2JZ54_9STRA9.850e-5852.07Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S2S100_9STRA9.880e-5861.45Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
B7GAC1_PHATC1.410e-5557.06Predicted protein n=3 Tax=Phaeodactylum tricornutu... [more]
A0A7S4D6T5_HETAK9.210e-5556.48Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S4EEJ6_9STRA1.180e-5457.06Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A5J4Z4W6_PORPP1.650e-5455.56Ribosome-recycling factor n=1 Tax=Porphyridium pur... [more]
RRF_CROS52.120e-5457.71Ribosome-recycling factor n=9 Tax=Oscillatoriophyc... [more]
A0A1E7F508_9STRA5.660e-5453.77Ribosome releasing factor n=1 Tax=Fragilariopsis c... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig10380contigP-canaliculata_contig10380:2102..6760 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score283.1
Seed ortholog evalue9.6e-74
Seed eggNOG ortholog2880.D7G2D8
Preferred nameRRF1
KEGG rclassRC00002,RC00078,RC02809,RC02889
KEGG koko:K02838,ko:K03283,ko:K13811
KEGG TC1.A.33.1
KEGG ReactionR00509,R00529,R04928,R04929
KEGG Pathwayko00230,ko00261,ko00450,ko00920,ko01100,ko01120,ko01130,ko03040,ko04010,ko04141,ko04144,ko04213,ko04612,ko04915,ko05134,ko05145,ko05162,ko05164,ko05169,map00230,map00261,map00450,map00920,map01100,map01120,map01130,map03040,map04010,map04141,map04144,map04213,map04612,map04915,map05134,map05145,map05162,map05164,map05169
KEGG ModuleM00176,M00353,M00355
GOsGO:0000003,GO:0002181,GO:0002184,GO:0002376,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003747,GO:0005488,GO:0005507,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006412,GO:0006415,GO:0006518,GO:0006807,GO:0006950,GO:0006952,GO:0006955,GO:0006996,GO:0007275,GO:0008079,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009579,GO:0009605,GO:0009607,GO:0009617,GO:0009620,GO:0009657,GO:0009658,GO:0009790,GO:0009791,GO:0009793,GO:0009814,GO:0009817,GO:0009987,GO:0010154,GO:0010467,GO:0016043,GO:0019538,GO:0022411,GO:0022414,GO:0032501,GO:0032502,GO:0032543,GO:0032544,GO:0032790,GO:0032984,GO:0032988,GO:0034641,GO:0034645,GO:0042742,GO:0043021,GO:0043023,GO:0043043,GO:0043167,GO:0043169,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045087,GO:0046872,GO:0046914,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0050832,GO:0050896,GO:0051704,GO:0051707,GO:0061458,GO:0070126,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:0098542,GO:0140053,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903008
EggNOG free text desc.ribosomal large subunit binding
EggNOG OGsCOG0233@1,KOG4759@2759
EC2.7.1.25,2.7.7.4
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01009,ko03009,ko03012,ko03029,ko03041,ko03051,ko03110,ko04131,ko04147,ko04516
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionribosome recycling factor
Ec32 orthologEc-00_005780.1
Exons7
Model size1563
Cds size576
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815608.3539908-UTR-P-canaliculata_contig10380:2101..29961622815608.3539908-UTR-P-canaliculata_contig10380:2101..2996Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10380 2102..2996 -
1693494163.747473-UTR-P-canaliculata_contig10380:2101..29961693494163.747473-UTR-P-canaliculata_contig10380:2101..2996Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10380 2102..2996 -
1622815608.4597158-UTR-P-canaliculata_contig10380:6668..67601622815608.4597158-UTR-P-canaliculata_contig10380:6668..6760Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10380 6669..6760 -
1693494163.8269954-UTR-P-canaliculata_contig10380:6668..67601693494163.8269954-UTR-P-canaliculata_contig10380:6668..6760Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10380 6669..6760 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815608.3658884-CDS-P-canaliculata_contig10380:2996..30981622815608.3658884-CDS-P-canaliculata_contig10380:2996..3098Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10380 2997..3098 -
1693494163.762707-CDS-P-canaliculata_contig10380:2996..30981693494163.762707-CDS-P-canaliculata_contig10380:2996..3098Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10380 2997..3098 -
1622815608.378572-CDS-P-canaliculata_contig10380:3692..37731622815608.378572-CDS-P-canaliculata_contig10380:3692..3773Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10380 3693..3773 -
1693494163.7716646-CDS-P-canaliculata_contig10380:3692..37731693494163.7716646-CDS-P-canaliculata_contig10380:3692..3773Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10380 3693..3773 -
1622815608.3894508-CDS-P-canaliculata_contig10380:4389..44771622815608.3894508-CDS-P-canaliculata_contig10380:4389..4477Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10380 4390..4477 -
1693494163.780218-CDS-P-canaliculata_contig10380:4389..44771693494163.780218-CDS-P-canaliculata_contig10380:4389..4477Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10380 4390..4477 -
1622815608.4046977-CDS-P-canaliculata_contig10380:4754..48591622815608.4046977-CDS-P-canaliculata_contig10380:4754..4859Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10380 4755..4859 -
1693494163.7894974-CDS-P-canaliculata_contig10380:4754..48591693494163.7894974-CDS-P-canaliculata_contig10380:4754..4859Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10380 4755..4859 -
1622815608.418242-CDS-P-canaliculata_contig10380:5354..54381622815608.418242-CDS-P-canaliculata_contig10380:5354..5438Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10380 5355..5438 -
1693494163.7995195-CDS-P-canaliculata_contig10380:5354..54381693494163.7995195-CDS-P-canaliculata_contig10380:5354..5438Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10380 5355..5438 -
1622815608.4303405-CDS-P-canaliculata_contig10380:5884..59971622815608.4303405-CDS-P-canaliculata_contig10380:5884..5997Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10380 5885..5997 -
1693494163.8084354-CDS-P-canaliculata_contig10380:5884..59971693494163.8084354-CDS-P-canaliculata_contig10380:5884..5997Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10380 5885..5997 -
1622815608.4446807-CDS-P-canaliculata_contig10380:6665..66681622815608.4446807-CDS-P-canaliculata_contig10380:6665..6668Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10380 6666..6668 -
1693494163.817751-CDS-P-canaliculata_contig10380:6665..66681693494163.817751-CDS-P-canaliculata_contig10380:6665..6668Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10380 6666..6668 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig10380.527.1prot_P-canaliculata_contig10380.527.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig10380 2997..6668 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig10380.527.1

>prot_P-canaliculata_contig10380.527.1 ID=prot_P-canaliculata_contig10380.527.1|Name=mRNA_P-canaliculata_contig10380.527.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=192bp
MADGEFDEKATMASAQEKMEKSTESVQNSLETLRTGRASPKVLDRVTVEC
YGVDTPLNQVASVKTSSATQLLVESYDAAILDDIATAIQESDVGLTPNND
GSVIRLNLPPVTEERRKELAKEAKALGEEGKVAIRNIRRDAVEAVKKAQK
SKSLGKDQSKDAQDAIQKLTDKFAKVIDEKVAAKEKDILKV*
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mRNA from alignment at P-canaliculata_contig10380:2102..6760-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig10380.527.1 ID=mRNA_P-canaliculata_contig10380.527.1|Name=mRNA_P-canaliculata_contig10380.527.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=4659bp|location=Sequence derived from alignment at P-canaliculata_contig10380:2102..6760- (Pelvetia canaliculata dioecious)
AGCGAACGAGATCCCTAGCGCTAGCGCAGGCGTCATCGTATGCATCAAGT
ACATTCCCCGCACATCGCGTTCGAGCGTCGTCTGCGTTGAAGATGGTGAG
ATATTATGACTTTCTTCTCCCTCGTGGTAGTGAGAAAAAGCGGCTTGTAT
TCCCCTTGAGTCGCCCGATCAAGTGAAATATCTCGTCCGCGCGGTAAACA
GGTCTACCACAGTACCACAGTACACATTAGTAGCATTTTTTCCTCGACGA
GAGGGAAGCGGAGTCAGAAGCTACCTGTAAAGCTTTGACTAGCTCTGACT
AGCTCTGACTTTCCTCATGTGGACGAGTGAAGGTTCTTGGGAGACATGAC
AGCGAGAGTACGTATCCCCCAACTATTGTAAGCGCTTCGTATGAACTCTT
GCAGGACCACCCGCGAAAAACAGATATATTACGACATCATACTGTAGATT
GGTTGACGAGTTGTAAGAGTGCTGAACTTGATAGGTCATCGCGATAAAAA
ATCGTAAGGCGTGAACCGGGGAGAGATGGGAAGATCCTTAGTGACCACAG
GCAGGATGGTAATTATGAGGTCCATCGTCTAAAAGTAGCTTTCGTGCCGA
CGACGATTCCTCCACTCCCGTTGAGAGTGCGGGATATCCTGCCACCGCCA
ACAATGTGTGCGGGATTCTTGCAACACCCCCGCCTCCTTTTTTTTTTTTT
TGTGACGACTTTTTCAACGCAACCCTGTTTGGATCCTGGCCGTTTGGTGG
TGGGGGGGGGCAGGCTGATGGGGAGTTCGACGAGAAGGCGACCATGGCTT
CGGCACAGGAAAAGATGGAGAAGTCCACGGAAAGCGTGCAGAACAGCCTC
GAGACGCTCCGAACCGGAAGGGCAAGGTATGAGTAAAGCTCGGCAGGGAG
CTTCCAAATCACATAGAAACAGAGACAAAAGGGTATGCGAAAACTCGGCG
ATACGGTTCTTTTCGCCGGTTCACGTCTTACCTATGTGCTCGAATATATC
GGTTTTACTATTAACTCCAAAAGAAGAAAACCAGGCACTGTATCGGCGAA
GCTCGGGGTGGGATCCAAGCTAGAAAACGGAAGCTTTCACTGGTCATCCT
CTCTTCCTTGGTGGCTTCTTGTCGGCTAGGGCACAGCTTCCCAGCCCGTT
GCATGGGGTGATTCTTTATTAAAGTTAGTTTAATCGATGGGCGTCTTTTT
CTCTTCCGTGAGAAGAAAAATCTTGTGACTTTTACCGCCCAACGGACACA
ACGACCACCCTACGAGTACTGTATCCGGTCTCCCCGCCCTACACCCCTTT
CGTCCGGATATTCGCCGTAAAGCCCCAAGGTGCTGGATCGCGTGACCGTA
GAGTGTTACGGCGTGGATACTCCGCTGAACCAGGTGGCTTCCGTGAAGAC
TTCCAGGTGAAGTGGCCGCCGCCGCCGCCGCCGAAGCAGCGGAATCGGTG
ACTTTAGCGAGAACGGTGTCACGTGGATGCCGTTGATCGACACCCATTTC
ACTCTACGAACATCGAATGTCGCTTGAAGTTGCTTCGCAGTAGAGGCTGT
GTACGGAGTACTAAACTACCTGGTGGGCAGGAGTGGTGTGGAATGCTGTG
GATGTATTCGTGAATCAAAATTGCATAACATTTTAACGGCGGGCGTCGCT
CTATCGATAGCAACCCTGACGGAAAGGGGAGGCGAGCGAACGTCGGTAGG
AAAACCTCCACCGCAGCGCTGGAATCAGCAGAAGCAATACTTGTAATACT
TGTTCTGCAGTAAGTGTACCCGCCATGTTGGTTACCCCTGAAATCATATC
AGACCCTGTGTCTCTTTGAGTCTCGGGTGTTGGTGTTGGTGTTGGTTTTG
GGTTTTATCCAGCCTAATCGTTTGGGGGCCGCCGTCTTTGCTTCATTGCA
GCGCCACGCAGCTACTGGTGGAATCGTACGACGCCGCCATCCTGGACGAC
ATCGCAACCGCCATACAAGAGTCAGACGTTGGGCTCACCCCAAACAACGA
CGGCAGGTAAATATTGGAAACCCGGATGGTCTTCCCTTAGCCCTCCCCCC
CCCTCGCCCCCCCGCCCCAGGTCAATATCACCCTTAATGCTGGCGAGCAG
TAATTGTCGTTTCGACTCTGTGAACCGCTGCACCGCCTCCCCATGTGTGC
AGGGTAGCGTCATTGTACAGGCCATCGGTCATTAGTGAGTCGTACCCTGC
TGCTTCGCCTAGCACTTGTTGCGTGCGCAGCATCCCGTGTTGACCGAATA
GATTCCTACCCTCCCTTCGACGGCCTGTCTCAGCGTGATCCGACTGAACC
TGCCGCCGGTGACGGAAGAGCGCAGAAAGGAGCTCGCCAAGGAAGCGAAG
GCTCTCGGGGAAGAGGGGAAGGTGAGGTCCATCACCTATTTCATTTTTGA
AAGTTTCAGTTTGAGGCCGGAGAGAGGTCCTAGGGCGGAGAAAATTCCGG
AATTTGTTGAGTATCCTTTGTAAAAGCACGTTATGAAAGCTCGCGAGATA
TTGTTTCGTCCAACGCTTCTCAGCCCGGGTGAGTCTGGTTCAAAACGAAG
ATACCATCCCCCCCCCTGAACGTGAGCTGACCAATGGGATTCCGGGTGCG
CCCCCCCCCCCCCCCCTCCCCCATACACTGTACACTGATTTTCCTATACA
ACGGTATCCACTTCATGTGTCAGCATCAAGAGGAACCTCCCAAGCACCCC
TCGGCAAGCAGCGGCAATACCGCGAGGCAGCTTTGAGACAACTAGCTGAT
CCGCCTTTTATGTACAACGTTGCACAAACAGAAGGGAAATTCACTATAAT
AATAAATAAGCTTAAAAAAACGTACTAAAAGTTGCGGTTGGAGGAACGTA
CTGATACACCCTGAAAACGAAATCCCAGCAAGAACAAAGATCGTTGATCC
ATCGCAACGCTCGTATCTGCGGGTGCTGCGATCGGCCCTCTTTTCCTATA
TAATAACTCTCTTATCTCATTTGTTTTTTTCGTTCAGGTAGCGATCCGTA
ACATCAGGCGAGATGCCGTGGAGGCCGTTAAGAAAGCCCAGAAGAGCAAG
AGCTTGGGGAAAGACCAGGTACTGTTTTTCTGACAGGGACGAACGCCTAC
CCCTCCCACGGGTGTGTTTGTTTGTTCCTCTTGTTAGTACGTAGCAGTCG
TGGCAAAGTGTGGTATTAATAATCGTGGACATTGGAATAGATAGGAAGAA
GGCATGGCCTTGGTGTGTCTCCGTTAAGGAATCGAGCTTGGCGTGCCGAC
GTAACTCTCCTGTTAATCCTTACGAACGGTGTTTATTAATATTAATAGCT
CATCCCACGTGGTGCCGCAATTTTTACAAAAAAAAAAGAATGAACGTCGC
CGTACCCCTCCCCATCGTCTGGCGCTTTGATCGCTTCAGCTACTGTACCT
CGTACGTCTTCCGCAATACAACACGTACAATATTGCAGTAAAATGTGCAA
CGCCTCATGCACGCTTGTCAGCCAGGTTCGTGGGGTTCGTGAACGTTCGT
ACATGTTTTGCTCCCGGGCTCTCTTCCGTGTCCGGCCCTAGATTTTTGGC
GCTTATTTGCGTGCTTGTTCGCTCGCGTGCTTGTTCGCTTGCCTGCTTAC
TTGTCCGCGTCCCACTCGCCGTTCTTGACCTGGTGTGTTGACGCTTGGCG
TACGCAACCAAGTCCAAGGATGCTCAAGACGCCATCCAAAAATTAACGGA
TAAGTTCGCGAAGGTTATAGACGAAAAAGTCGCGGCAAAGGAAAAGGACA
TCCTCAAGGTATAAGGCGTATGGCGTAACCTCGCCCCAACTGAGAGGACA
AGACCCTTGCCCGCAAGGCTCGGATTCCTCTCTGCGGAAAGGATATTGAA
GTCTTGCCTGGCTGGCTTTTGTTGTGTCGTTGGAGTGGCGACGATAGAGA
GAGCGGCAGTCCGAACAATGTACTATTGAAGGTATAAGACAGGTCGTTCG
CACAACCCGCGTACGTATATTGTTCGGAGCTTCGGAATGACGAAACAGTG
AGACCTTGCGATCTCGTCCGGGGAACTATCACCACAGCTATTCTGCGTTG
ACAACATAGTCTAGTCTAATAATTATTATATACAGCAGTATTAATAGAGC
TACAGGGAGAAGAGGGGAGGGGGTCATATAATGCACTCGACTTGCCGTGC
GTGGTGGTTGGAATAGAACGAGCGAGTCTCAATGATGACTGACGATATAT
GGAAGAAGTTTCCCCCGACCTGGAAAAGATCGCAGCATCCCGGCGTAGTT
CCACGTAGGATTTTCTAGAAGTCGTCTCCAAGAGACTGCTGGAATGCCTG
TGGCAGTTAAAACGTGTCGCTCTTCTCGCCCTGCACGGATCTTGTCTCGC
TCGGGTGTTTGTGCACCAAGCTGCGCATAGCTTGAAAAATAACTTATCTT
GCGCCAGGTACTCCCAATAGCGTGGCGCACTACCCTTCGTGTCCCTGTGG
GATTGCATCCGGCGGCCAAAGCTCATGCTGAAGCGAAAAGAAAAGTCGCT
CACGGTGAGACAGATTGATAAGTATCACTGCGCCCTTGACATTGATTGGT
CTGGCATGCTTCTTTCCTTTTCAATAATGCAGGTAATACCAGAGCGTTCA
ACTCGGCATGCAGCTATTTCTACGTATATGTGCGCCATCTGACGTAAGAC
ATTAGTAGG
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Coding sequence (CDS) from alignment at P-canaliculata_contig10380:2102..6760-

>mRNA_P-canaliculata_contig10380.527.1 ID=mRNA_P-canaliculata_contig10380.527.1|Name=mRNA_P-canaliculata_contig10380.527.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1152bp|location=Sequence derived from alignment at P-canaliculata_contig10380:2102..6760- (Pelvetia canaliculata dioecious)
ATGATGGCTGATGGGGAGTTCGACGAGAAGGCGACCATGGCTTCGGCACA
GGAAAAGATGGAGAAGTCCACGGAAAGCGTGCAGAACAGCCTCGAGACGC
TCCGAACCGGAAGGGCAAGGCTGATGGGGAGTTCGACGAGAAGGCGACCA
TGGCTTCGGCACAGGAAAAGATGGAGAAGTCCACGGAAAGCGTGCAGAAC
AGCCTCGAGACGCTCCGAACCGGAAGGGCAAGCCCCAAGGTGCTGGATCG
CGTGACCGTAGAGTGTTACGGCGTGGATACTCCGCTGAACCAGGTGGCTT
CCGTGAAGACTTCCAGCCCCAAGGTGCTGGATCGCGTGACCGTAGAGTGT
TACGGCGTGGATACTCCGCTGAACCAGGTGGCTTCCGTGAAGACTTCCAG
CGCCACGCAGCTACTGGTGGAATCGTACGACGCCGCCATCCTGGACGACA
TCGCAACCGCCATACAAGAGTCAGACGTTGGGCTCACCCCAAACAACGAC
GGCAGCGCCACGCAGCTACTGGTGGAATCGTACGACGCCGCCATCCTGGA
CGACATCGCAACCGCCATACAAGAGTCAGACGTTGGGCTCACCCCAAACA
ACGACGGCAGCGTGATCCGACTGAACCTGCCGCCGGTGACGGAAGAGCGC
AGAAAGGAGCTCGCCAAGGAAGCGAAGGCTCTCGGGGAAGAGGGGAAGCG
TGATCCGACTGAACCTGCCGCCGGTGACGGAAGAGCGCAGAAAGGAGCTC
GCCAAGGAAGCGAAGGCTCTCGGGGAAGAGGGGAAGGTAGCGATCCGTAA
CATCAGGCGAGATGCCGTGGAGGCCGTTAAGAAAGCCCAGAAGAGCAAGA
GCTTGGGGAAAGACCAGGTAGCGATCCGTAACATCAGGCGAGATGCCGTG
GAGGCCGTTAAGAAAGCCCAGAAGAGCAAGAGCTTGGGGAAAGACCAGTC
CAAGGATGCTCAAGACGCCATCCAAAAATTAACGGATAAGTTCGCGAAGG
TTATAGACGAAAAAGTCGCGGCAAAGGAAAAGGACATCCTCAAGGTATAA
TCCAAGGATGCTCAAGACGCCATCCAAAAATTAACGGATAAGTTCGCGAA
GGTTATAGACGAAAAAGTCGCGGCAAAGGAAAAGGACATCCTCAAGGTAT
AA
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