prot_P-canaliculata_contig103676.510.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_P-canaliculata_contig103676.510.1
Unique Name	prot_P-canaliculata_contig103676.510.1
Type	polypeptide
Organism	Pelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length	80

Homology

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BLAST of mRNA_P-canaliculata_contig103676.510.1 vs. uniprot
Match: A0A7Y2F802_9BACT (Uncharacterized protein n=1 Tax=Pirellulaceae bacterium TaxID=2699754 RepID=A0A7Y2F802_9BACT)

HSP 1 Score: 113 bits (282), Expect = 4.950e-31
Identity = 47/75 (62.67%), Postives = 62/75 (82.67%), Query Frame = 0

Query:    1 WLRGAVIVTIAALIGIASLALFCYAYGLNFQDEGWVTNPDGTPSIKQGPLVGSFVGMVVATILFWWGFMQVTRSK 75
            WLRGA++V IA+L+G+ASLALFC+AYGLNFQDEGW ++    P +KQG L+ S VG ++AT+LFWWGF++ TR K
Sbjct:   17 WLRGALMVAIASLLGLASLALFCHAYGLNFQDEGWASSDGNGPQVKQGALIASIVGTLIATVLFWWGFIRATRKK 91

[Close]

BLAST of mRNA_P-canaliculata_contig103676.510.1 vs. uniprot
Match: A0A517NN24_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium K23_9 TaxID=1930275 RepID=A0A517NN24_9BACT)

HSP 1 Score: 78.2 bits (191), Expect = 2.300e-17
Identity = 38/72 (52.78%), Postives = 51/72 (70.83%), Query Frame = 0

Query:    7 IVTIAALIGIASLALFCYAYGLNFQDEGWVTNPDGT-PSIKQGPLVGSFVGMVVATILFWWGFMQVTRSKFH 77
            +V  AA++G+ SLA FCYA+GLNFQDEGW T PDG+ P + +  L+ S  G  +AT+LFW G +Q+TR   H
Sbjct:    2 LVLAAAILGMLSLAAFCYAWGLNFQDEGW-TQPDGSSPMVNRPWLIASAAGASLATLLFWIGLVQLTRQNKH 72

The following BLAST results are available for this feature:

BLAST of mRNA_P-canaliculata_contig103676.510.1 vs. uniprot

BLAST of mRNA_P-canaliculata_contig103676.510.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A7Y2F802_9BACT	4.950e-31	62.67	Uncharacterized protein n=1 Tax=Pirellulaceae bact...	[more]
A0A517NN24_9BACT	2.300e-17	52.78	Uncharacterized protein n=1 Tax=Planctomycetes bac...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 29..47
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..6
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 7..28
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 69..79
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 48..68
None	No IPR available	TMHMM	TMhelix		coord: 47..69
None	No IPR available	TMHMM	TMhelix		coord: 5..27

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-canaliculata_contig103676	contig	P-canaliculata_contig103676:623..862 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Pelvetia canaliculata dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_P-canaliculata_contig103676.510.1	mRNA_P-canaliculata_contig103676.510.1	Pelvetia canaliculata dioecious	mRNA	P-canaliculata_contig103676 623..862 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_P-canaliculata_contig103676.510.1 ID=prot_P-canaliculata_contig103676.510.1|Name=mRNA_P-canaliculata_contig103676.510.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=80bp
WLRGAVIVTIAALIGIASLALFCYAYGLNFQDEGWVTNPDGTPSIKQGPL
VGSFVGMVVATILFWWGFMQVTRSKFHKH*