mRNA_P-canaliculata_contig103676.510.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig103676.510.1
Unique NamemRNA_P-canaliculata_contig103676.510.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig103676.510.1 vs. uniprot
Match: A0A7Y2F802_9BACT (Uncharacterized protein n=1 Tax=Pirellulaceae bacterium TaxID=2699754 RepID=A0A7Y2F802_9BACT)

HSP 1 Score: 113 bits (282), Expect = 4.950e-31
Identity = 47/75 (62.67%), Postives = 62/75 (82.67%), Query Frame = 1 
Query:    1 WLRGAVIVTIAALIGIASLALFCYAYGLNFQDEGWVTNPDGTPSIKQGPLVGSFVGMVVATILFWWGFMQVTRSK 225
            WLRGA++V IA+L+G+ASLALFC+AYGLNFQDEGW ++    P +KQG L+ S VG ++AT+LFWWGF++ TR K
Sbjct:   17 WLRGALMVAIASLLGLASLALFCHAYGLNFQDEGWASSDGNGPQVKQGALIASIVGTLIATVLFWWGFIRATRKK 91
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BLAST of mRNA_P-canaliculata_contig103676.510.1 vs. uniprot
Match: A0A517NN24_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium K23_9 TaxID=1930275 RepID=A0A517NN24_9BACT)

HSP 1 Score: 78.2 bits (191), Expect = 2.300e-17
Identity = 38/72 (52.78%), Postives = 51/72 (70.83%), Query Frame = 1 
Query:   19 IVTIAALIGIASLALFCYAYGLNFQDEGWVTNPDGT-PSIKQGPLVGSFVGMVVATILFWWGFMQVTRSKFH 231
            +V  AA++G+ SLA FCYA+GLNFQDEGW T PDG+ P + +  L+ S  G  +AT+LFW G +Q+TR   H
Sbjct:    2 LVLAAAILGMLSLAAFCYAWGLNFQDEGW-TQPDGSSPMVNRPWLIASAAGASLATLLFWIGLVQLTRQNKH 72
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig103676.510.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7Y2F802_9BACT4.950e-3162.67Uncharacterized protein n=1 Tax=Pirellulaceae bact... [more]
A0A517NN24_9BACT2.300e-1752.78Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig103676contigP-canaliculata_contig103676:623..862 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size240
Cds size240
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815607.1810665-CDS-P-canaliculata_contig103676:622..8621622815607.1810665-CDS-P-canaliculata_contig103676:622..862Pelvetia canaliculata dioeciousCDSP-canaliculata_contig103676 623..862 -
1693494163.0818486-CDS-P-canaliculata_contig103676:622..8621693494163.0818486-CDS-P-canaliculata_contig103676:622..862Pelvetia canaliculata dioeciousCDSP-canaliculata_contig103676 623..862 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig103676.510.1prot_P-canaliculata_contig103676.510.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig103676 623..862 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig103676.510.1

>prot_P-canaliculata_contig103676.510.1 ID=prot_P-canaliculata_contig103676.510.1|Name=mRNA_P-canaliculata_contig103676.510.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=80bp
WLRGAVIVTIAALIGIASLALFCYAYGLNFQDEGWVTNPDGTPSIKQGPL
VGSFVGMVVATILFWWGFMQVTRSKFHKH*
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mRNA from alignment at P-canaliculata_contig103676:623..862-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig103676.510.1 ID=mRNA_P-canaliculata_contig103676.510.1|Name=mRNA_P-canaliculata_contig103676.510.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=240bp|location=Sequence derived from alignment at P-canaliculata_contig103676:623..862- (Pelvetia canaliculata dioecious)
TGGCTTAGGGGTGCTGTGATAGTAACCATCGCGGCATTGATCGGAATCGC
ATCGCTGGCGTTGTTTTGCTACGCCTACGGGTTAAATTTTCAAGACGAAG
GGTGGGTCACCAATCCAGACGGCACCCCCAGTATTAAGCAGGGGCCCTTG
GTTGGATCGTTCGTCGGAATGGTTGTCGCAACGATTTTGTTTTGGTGGGG
ATTCATGCAAGTCACTCGTTCAAAATTCCACAAGCATTAG
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Coding sequence (CDS) from alignment at P-canaliculata_contig103676:623..862-

>mRNA_P-canaliculata_contig103676.510.1 ID=mRNA_P-canaliculata_contig103676.510.1|Name=mRNA_P-canaliculata_contig103676.510.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=480bp|location=Sequence derived from alignment at P-canaliculata_contig103676:623..862- (Pelvetia canaliculata dioecious)
TGGCTTAGGGGTGCTGTGATAGTAACCATCGCGGCATTGATCGGAATCGC
ATCGCTGGCGTTGTTTTGCTACGCCTACGGGTTAAATTTTCAAGACGAAG
GGTGGGTCACCAATCCAGACGGCACCCCCAGTATTAAGCAGGGGCCCTTG
GTTGGATCGTTCGTCGGAATGGTTGTCGCAACGATTTTGTTTTGGTGGGG
ATTCATGCAAGTCACTCGTTCAAAATTCCACAAGCATTAGTGGCTTAGGG
GTGCTGTGATAGTAACCATCGCGGCATTGATCGGAATCGCATCGCTGGCG
TTGTTTTGCTACGCCTACGGGTTAAATTTTCAAGACGAAGGGTGGGTCAC
CAATCCAGACGGCACCCCCAGTATTAAGCAGGGGCCCTTGGTTGGATCGT
TCGTCGGAATGGTTGTCGCAACGATTTTGTTTTGGTGGGGATTCATGCAA
GTCACTCGTTCAAAATTCCACAAGCATTAG
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