prot_P-canaliculata_contig103051.442.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-canaliculata_contig103051.442.1
Unique Nameprot_P-canaliculata_contig103051.442.1
Typepolypeptide
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length241
Homology
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BLAST of mRNA_P-canaliculata_contig103051.442.1 vs. uniprot
Match: A0A2D9JFX2_9BACT (Uncharacterized protein n=1 Tax=Rhodopirellula sp. TaxID=2024855 RepID=A0A2D9JFX2_9BACT)

HSP 1 Score: 141 bits (355), Expect = 6.960e-38
Identity = 83/229 (36.24%), Postives = 128/229 (55.90%), Query Frame = 0 
Query:   14 LILVAFVGAYVSAGYSHTLSGLLQKQREFNELFGAMDIEDPSQVAIVAVSPTASDL-PPWMDPERVWIYRVQIPANYAVAWSENEGLIAADSPLRRGNNGGSYSYQGSEAPKEVRIVITTNIEDGRLKGTMLTNSGSLSFSLPKEMALASPDDLILDEVVKPGDPMRTFAVDEAICVWRIRSKKPSKKMRNHTQ--LYPGCAIYLYETSRRDAFERWANGKASSMGKST 239
            L+++  VG  +    +  LS L +   +  +  G +++EDP+QV +VAV PT +D+ PP ++   VW YR+  PANY  ++S   GL+AA+SP  RG +  S+    ++ P+E+   I     DG+      T   S + SLP +  L S DDL+++  V  GD  R+F  DEAIC+ R+R K  +KK    T+  LY G  +Y+Y    R AF+ WA G  +SM ++T
Sbjct:    2 LMMLLLVGIGLLIHSNLELSTLRRIHADLRDEIGLLEVEDPTQVTMVAV-PTPNDVVPPGVEQAHVWRYRIHFPANYGASFSTQGGLVAANSPQGRGGSSSSWGNP-NKTPEELLTTIALVKSDGKWICCRDTGGSSSTISLPDDFDLESLDDLVIETPVALGDKSRSFETDEAICLIRLREKNLAKKRNGETENDLYRGFHLYVYGDKHRAAFDAWARGDTTSMQETT 228
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig103051.442.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2D9JFX2_9BACT6.960e-3836.24Uncharacterized protein n=1 Tax=Rhodopirellula sp.... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 19..26
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..6
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 7..18
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 27..240
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..26
NoneNo IPR availableSIGNALP_EUKSignalP-TMSignalP-TMcoord: 1..22
score: 0.549
NoneNo IPR availableTMHMMTMhelixcoord: 7..29

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig103051contigP-canaliculata_contig103051:196..918 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig103051.442.1mRNA_P-canaliculata_contig103051.442.1Pelvetia canaliculata dioeciousmRNAP-canaliculata_contig103051 196..918 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-canaliculata_contig103051.442.1 ID=prot_P-canaliculata_contig103051.442.1|Name=mRNA_P-canaliculata_contig103051.442.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=241bp
APRSSRFSLIAIVLILVAFVGAYVSAGYSHTLSGLLQKQREFNELFGAMD
IEDPSQVAIVAVSPTASDLPPWMDPERVWIYRVQIPANYAVAWSENEGLI
AADSPLRRGNNGGSYSYQGSEAPKEVRIVITTNIEDGRLKGTMLTNSGSL
SFSLPKEMALASPDDLILDEVVKPGDPMRTFAVDEAICVWRIRSKKPSKK
MRNHTQLYPGCAIYLYETSRRDAFERWANGKASSMGKSTL*
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