mRNA_P-canaliculata_contig103051.442.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig103051.442.1
Unique NamemRNA_P-canaliculata_contig103051.442.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig103051.442.1 vs. uniprot
Match: A0A2D9JFX2_9BACT (Uncharacterized protein n=1 Tax=Rhodopirellula sp. TaxID=2024855 RepID=A0A2D9JFX2_9BACT)

HSP 1 Score: 141 bits (355), Expect = 6.960e-38
Identity = 83/229 (36.24%), Postives = 128/229 (55.90%), Query Frame = 1 
Query:   40 LILVAFVGAYVSAGYSHTLSGLLQKQREFNELFGAMDIEDPSQVAIVAVSPTASDL-PPWMDPERVWIYRVQIPANYAVAWSENEGLIAADSPLRRGNNGGSYSYQGSEAPKEVRIVITTNIEDGRLKGTMLTNSGSLSFSLPKEMALASPDDLILDEVVKPGDPMRTFAVDEAICVWRIRSKKPSKKMRNHTQ--LYPGCAIYLYETSRRDAFERWANGKASSMGKST 717
            L+++  VG  +    +  LS L +   +  +  G +++EDP+QV +VAV PT +D+ PP ++   VW YR+  PANY  ++S   GL+AA+SP  RG +  S+    ++ P+E+   I     DG+      T   S + SLP +  L S DDL+++  V  GD  R+F  DEAIC+ R+R K  +KK    T+  LY G  +Y+Y    R AF+ WA G  +SM ++T
Sbjct:    2 LMMLLLVGIGLLIHSNLELSTLRRIHADLRDEIGLLEVEDPTQVTMVAV-PTPNDVVPPGVEQAHVWRYRIHFPANYGASFSTQGGLVAANSPQGRGGSSSSWGNP-NKTPEELLTTIALVKSDGKWICCRDTGGSSSTISLPDDFDLESLDDLVIETPVALGDKSRSFETDEAICLIRLREKNLAKKRNGETENDLYRGFHLYVYGDKHRAAFDAWARGDTTSMQETT 228
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig103051.442.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2D9JFX2_9BACT6.960e-3836.24Uncharacterized protein n=1 Tax=Rhodopirellula sp.... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig103051contigP-canaliculata_contig103051:196..918 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size723
Cds size723
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815602.2437994-CDS-P-canaliculata_contig103051:195..9181622815602.2437994-CDS-P-canaliculata_contig103051:195..918Pelvetia canaliculata dioeciousCDSP-canaliculata_contig103051 196..918 +
1693494160.4514568-CDS-P-canaliculata_contig103051:195..9181693494160.4514568-CDS-P-canaliculata_contig103051:195..918Pelvetia canaliculata dioeciousCDSP-canaliculata_contig103051 196..918 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig103051.442.1prot_P-canaliculata_contig103051.442.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig103051 196..918 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig103051.442.1

>prot_P-canaliculata_contig103051.442.1 ID=prot_P-canaliculata_contig103051.442.1|Name=mRNA_P-canaliculata_contig103051.442.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=241bp
APRSSRFSLIAIVLILVAFVGAYVSAGYSHTLSGLLQKQREFNELFGAMD
IEDPSQVAIVAVSPTASDLPPWMDPERVWIYRVQIPANYAVAWSENEGLI
AADSPLRRGNNGGSYSYQGSEAPKEVRIVITTNIEDGRLKGTMLTNSGSL
SFSLPKEMALASPDDLILDEVVKPGDPMRTFAVDEAICVWRIRSKKPSKK
MRNHTQLYPGCAIYLYETSRRDAFERWANGKASSMGKSTL*
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mRNA from alignment at P-canaliculata_contig103051:196..918+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig103051.442.1 ID=mRNA_P-canaliculata_contig103051.442.1|Name=mRNA_P-canaliculata_contig103051.442.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=723bp|location=Sequence derived from alignment at P-canaliculata_contig103051:196..918+ (Pelvetia canaliculata dioecious)
GCCCCTCGTTCTTCGCGATTTAGCCTGATCGCAATCGTTTTAATCTTAGT
CGCCTTCGTGGGAGCCTACGTATCGGCAGGCTACAGCCATACGCTTTCGG
GTCTGCTTCAAAAGCAACGTGAATTCAACGAATTATTTGGAGCGATGGAT
ATTGAAGACCCATCGCAAGTTGCAATCGTTGCGGTTTCACCAACGGCATC
GGATCTGCCACCTTGGATGGACCCAGAAAGGGTTTGGATATATCGCGTCC
AAATTCCCGCCAACTACGCCGTTGCTTGGTCAGAAAACGAAGGGCTGATT
GCTGCTGATTCGCCGCTTCGCCGAGGCAATAACGGCGGCAGCTATTCCTA
TCAAGGATCTGAAGCGCCGAAGGAAGTTCGAATTGTCATCACCACGAATA
TCGAAGACGGTCGTTTGAAGGGCACAATGCTTACGAACAGTGGATCATTG
TCATTCTCATTGCCTAAAGAAATGGCACTCGCGTCGCCGGACGATTTAAT
ACTGGATGAGGTTGTAAAACCGGGCGATCCGATGCGAACGTTTGCTGTGG
ATGAAGCGATTTGTGTCTGGCGAATCCGAAGTAAAAAACCGAGTAAAAAA
ATGCGCAACCATACACAACTTTATCCCGGATGCGCAATCTATCTGTACGA
AACTTCACGACGCGATGCGTTCGAACGATGGGCCAACGGCAAGGCTTCCT
CGATGGGAAAATCGACGCTTTAG
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Coding sequence (CDS) from alignment at P-canaliculata_contig103051:196..918+

>mRNA_P-canaliculata_contig103051.442.1 ID=mRNA_P-canaliculata_contig103051.442.1|Name=mRNA_P-canaliculata_contig103051.442.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1446bp|location=Sequence derived from alignment at P-canaliculata_contig103051:196..918+ (Pelvetia canaliculata dioecious)
GCCCCTCGTTCTTCGCGATTTAGCCTGATCGCAATCGTTTTAATCTTAGT
CGCCTTCGTGGGAGCCTACGTATCGGCAGGCTACAGCCATACGCTTTCGG
GTCTGCTTCAAAAGCAACGTGAATTCAACGAATTATTTGGAGCGATGGAT
ATTGAAGACCCATCGCAAGTTGCAATCGTTGCGGTTTCACCAACGGCATC
GGATCTGCCACCTTGGATGGACCCAGAAAGGGTTTGGATATATCGCGTCC
AAATTCCCGCCAACTACGCCGTTGCTTGGTCAGAAAACGAAGGGCTGATT
GCTGCTGATTCGCCGCTTCGCCGAGGCAATAACGGCGGCAGCTATTCCTA
TCAAGGATCTGAAGCGCCGAAGGAAGTTCGAATTGTCATCACCACGAATA
TCGAAGACGGTCGTTTGAAGGGCACAATGCTTACGAACAGTGGATCATTG
TCATTCTCATTGCCTAAAGAAATGGCACTCGCGTCGCCGGACGATTTAAT
ACTGGATGAGGTTGTAAAACCGGGCGATCCGATGCGAACGTTTGCTGTGG
ATGAAGCGATTTGTGTCTGGCGAATCCGAAGTAAAAAACCGAGTAAAAAA
ATGCGCAACCATACACAACTTTATCCCGGATGCGCAATCTATCTGTACGA
AACTTCACGACGCGATGCGTTCGAACGATGGGCCAACGGCAAGGCTTCCT
CGATGGGAAAATCGACGCTTTAGGCCCCTCGTTCTTCGCGATTTAGCCTG
ATCGCAATCGTTTTAATCTTAGTCGCCTTCGTGGGAGCCTACGTATCGGC
AGGCTACAGCCATACGCTTTCGGGTCTGCTTCAAAAGCAACGTGAATTCA
ACGAATTATTTGGAGCGATGGATATTGAAGACCCATCGCAAGTTGCAATC
GTTGCGGTTTCACCAACGGCATCGGATCTGCCACCTTGGATGGACCCAGA
AAGGGTTTGGATATATCGCGTCCAAATTCCCGCCAACTACGCCGTTGCTT
GGTCAGAAAACGAAGGGCTGATTGCTGCTGATTCGCCGCTTCGCCGAGGC
AATAACGGCGGCAGCTATTCCTATCAAGGATCTGAAGCGCCGAAGGAAGT
TCGAATTGTCATCACCACGAATATCGAAGACGGTCGTTTGAAGGGCACAA
TGCTTACGAACAGTGGATCATTGTCATTCTCATTGCCTAAAGAAATGGCA
CTCGCGTCGCCGGACGATTTAATACTGGATGAGGTTGTAAAACCGGGCGA
TCCGATGCGAACGTTTGCTGTGGATGAAGCGATTTGTGTCTGGCGAATCC
GAAGTAAAAAACCGAGTAAAAAAATGCGCAACCATACACAACTTTATCCC
GGATGCGCAATCTATCTGTACGAAACTTCACGACGCGATGCGTTCGAACG
ATGGGCCAACGGCAAGGCTTCCTCGATGGGAAAATCGACGCTTTAG
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