prot_P-canaliculata_contig102425.384.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-canaliculata_contig102425.384.1
Unique Nameprot_P-canaliculata_contig102425.384.1
Typepolypeptide
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length164
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig102425.384.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019734Tetratricopeptide repeatSMARTSM00028tpr_5coord: 76..109
e-value: 0.43
score: 19.6
coord: 42..75
e-value: 0.89
score: 18.6
coord: 110..143
e-value: 18.0
score: 12.7
coord: 8..41
e-value: 29.0
score: 10.9
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 76..109
score: 8.585
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 42..75
score: 7.139
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 8..41
score: 5.369
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 110..143
score: 9.027
NoneNo IPR availablePFAMPF14559TPR_19coord: 20..82
e-value: 1.0E-7
score: 32.4
NoneNo IPR availablePFAMPF13432TPR_16coord: 114..146
e-value: 0.0045
score: 17.6
NoneNo IPR availablePANTHERPTHR44858FAMILY NOT NAMEDcoord: 21..160
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 6..162
e-value: 2.5E-29
score: 104.1
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 9..161
IPR013026Tetratricopeptide repeat-containing domainPROSITEPS50293TPR_REGIONcoord: 8..163
score: 26.507

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig102425contigP-canaliculata_contig102425:502..993 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig102425.384.1mRNA_P-canaliculata_contig102425.384.1Pelvetia canaliculata dioeciousmRNAP-canaliculata_contig102425 502..993 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-canaliculata_contig102425.384.1 ID=prot_P-canaliculata_contig102425.384.1|Name=mRNA_P-canaliculata_contig102425.384.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=164bp
QELGISETDSLLLRASQAAGSGDLTAAITFYNSAIEADNTRPEAHAGLAF
TLLQNGEETLALASAEKAVAMAPEDPRANYALGHILRMIGEDDRALAALT
SALQAEPELLIAVYEQGMILAANGELENALKNFERFLESHPGDESALTAI
ASVKSRLGKTDTY*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019734TPR_repeat
IPR011990TPR-like_helical_dom_sf
IPR013026TPR-contain_dom