mRNA_P-canaliculata_contig102425.384.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig102425.384.1
Unique NamemRNA_P-canaliculata_contig102425.384.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig102425.384.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig102425contigP-canaliculata_contig102425:502..993 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size492
Cds size492
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815598.1885836-CDS-P-canaliculata_contig102425:501..9931622815598.1885836-CDS-P-canaliculata_contig102425:501..993Pelvetia canaliculata dioeciousCDSP-canaliculata_contig102425 502..993 -
1693494158.0964966-CDS-P-canaliculata_contig102425:501..9931693494158.0964966-CDS-P-canaliculata_contig102425:501..993Pelvetia canaliculata dioeciousCDSP-canaliculata_contig102425 502..993 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig102425.384.1prot_P-canaliculata_contig102425.384.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig102425 502..993 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig102425.384.1

>prot_P-canaliculata_contig102425.384.1 ID=prot_P-canaliculata_contig102425.384.1|Name=mRNA_P-canaliculata_contig102425.384.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=164bp
QELGISETDSLLLRASQAAGSGDLTAAITFYNSAIEADNTRPEAHAGLAF
TLLQNGEETLALASAEKAVAMAPEDPRANYALGHILRMIGEDDRALAALT
SALQAEPELLIAVYEQGMILAANGELENALKNFERFLESHPGDESALTAI
ASVKSRLGKTDTY*
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mRNA from alignment at P-canaliculata_contig102425:502..993-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig102425.384.1 ID=mRNA_P-canaliculata_contig102425.384.1|Name=mRNA_P-canaliculata_contig102425.384.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=492bp|location=Sequence derived from alignment at P-canaliculata_contig102425:502..993- (Pelvetia canaliculata dioecious)
CAGGAGCTCGGCATCAGCGAAACCGATTCCCTACTCCTCCGCGCCTCCCA
AGCGGCTGGCAGCGGCGACCTTACCGCAGCCATCACCTTCTACAATTCAG
CCATAGAAGCCGATAACACCCGCCCCGAGGCACACGCCGGCCTCGCATTC
ACTCTCCTTCAGAACGGCGAGGAAACCCTTGCCCTCGCCTCAGCCGAAAA
AGCCGTTGCGATGGCTCCCGAGGATCCGCGCGCAAACTACGCCCTCGGCC
ACATCCTCCGCATGATCGGAGAAGACGATCGCGCGCTTGCCGCTCTTACA
TCAGCCCTCCAGGCAGAACCAGAACTCCTCATCGCCGTCTATGAGCAAGG
CATGATACTCGCCGCAAACGGTGAACTCGAAAACGCCTTGAAAAACTTCG
AGCGCTTCCTCGAAAGCCACCCCGGTGACGAAAGCGCCCTCACAGCGATC
GCCAGCGTAAAATCCCGCCTGGGCAAGACCGACACCTACTAG
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Coding sequence (CDS) from alignment at P-canaliculata_contig102425:502..993-

>mRNA_P-canaliculata_contig102425.384.1 ID=mRNA_P-canaliculata_contig102425.384.1|Name=mRNA_P-canaliculata_contig102425.384.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=984bp|location=Sequence derived from alignment at P-canaliculata_contig102425:502..993- (Pelvetia canaliculata dioecious)
CAGGAGCTCGGCATCAGCGAAACCGATTCCCTACTCCTCCGCGCCTCCCA
AGCGGCTGGCAGCGGCGACCTTACCGCAGCCATCACCTTCTACAATTCAG
CCATAGAAGCCGATAACACCCGCCCCGAGGCACACGCCGGCCTCGCATTC
ACTCTCCTTCAGAACGGCGAGGAAACCCTTGCCCTCGCCTCAGCCGAAAA
AGCCGTTGCGATGGCTCCCGAGGATCCGCGCGCAAACTACGCCCTCGGCC
ACATCCTCCGCATGATCGGAGAAGACGATCGCGCGCTTGCCGCTCTTACA
TCAGCCCTCCAGGCAGAACCAGAACTCCTCATCGCCGTCTATGAGCAAGG
CATGATACTCGCCGCAAACGGTGAACTCGAAAACGCCTTGAAAAACTTCG
AGCGCTTCCTCGAAAGCCACCCCGGTGACGAAAGCGCCCTCACAGCGATC
GCCAGCGTAAAATCCCGCCTGGGCAAGACCGACACCTACTAGCAGGAGCT
CGGCATCAGCGAAACCGATTCCCTACTCCTCCGCGCCTCCCAAGCGGCTG
GCAGCGGCGACCTTACCGCAGCCATCACCTTCTACAATTCAGCCATAGAA
GCCGATAACACCCGCCCCGAGGCACACGCCGGCCTCGCATTCACTCTCCT
TCAGAACGGCGAGGAAACCCTTGCCCTCGCCTCAGCCGAAAAAGCCGTTG
CGATGGCTCCCGAGGATCCGCGCGCAAACTACGCCCTCGGCCACATCCTC
CGCATGATCGGAGAAGACGATCGCGCGCTTGCCGCTCTTACATCAGCCCT
CCAGGCAGAACCAGAACTCCTCATCGCCGTCTATGAGCAAGGCATGATAC
TCGCCGCAAACGGTGAACTCGAAAACGCCTTGAAAAACTTCGAGCGCTTC
CTCGAAAGCCACCCCGGTGACGAAAGCGCCCTCACAGCGATCGCCAGCGT
AAAATCCCGCCTGGGCAAGACCGACACCTACTAG
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