prot_P-canaliculata_contig102382.378.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_P-canaliculata_contig102382.378.1
Unique Name	prot_P-canaliculata_contig102382.378.1
Type	polypeptide
Organism	Pelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length	327

Homology

[Close]

BLAST of mRNA_P-canaliculata_contig102382.378.1 vs. uniprot
Match: A0A8J3G0I5_9PROT (DNA-directed RNA polymerase subunit beta n=1 Tax=Algimonas arctica TaxID=1479486 RepID=A0A8J3G0I5_9PROT)

HSP 1 Score: 593 bits (1529), Expect = 2.090e-199
Identity = 286/327 (87.46%), Postives = 310/327 (94.80%), Query Frame = 0

Query:    1 MSKNAVSGPRGFKKGPVTEENLNDIPRSDWWRIGVDDEQAIGELEALKEQYDTSKGRLDARFEDKVDKLQRGDELPPGVMKMVKVFVAVKRKLQPGDKMAGRHGNKGVISKINPVEDMPYLETGQAVDIVLNPLGVPSRMNVGQILETHLGWACAGIGKLIDDALETYKVDNDMAALREAVQHGYGDGEVLPRKNDEIIELAGNVTRGIPIATPVFDGAREPDIVTMLERAGLHSSGQMVLNDGRTGEKFTRPVTVGYKYLLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 327
            M K+AVSGPRGFKKGP+T+E L+++PRSDWWRIG+DDE+AIGELEALK QYDTSK RLDARF+DKVDKLQRGD+LPPGVMKMVKVFVAVKRKLQPGDKMAGRHGNKGVISKINP+EDMP+L  GQAVDIVLNPLGVPSRMNVGQILETHLGWACAGIG +I++ALE YK D ++ ALREAVQHGYGD   LPRKNDE+IELAGNV RG+PIATPVFDGAREPDIVTMLE+AGLHSSGQ+ L+DGRTG++FTR VTVGYKYLLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV
Sbjct:  990 MGKSAVSGPRGFKKGPITDETLDEVPRSDWWRIGLDDEKAIGELEALKSQYDTSKARLDARFDDKVDKLQRGDDLPPGVMKMVKVFVAVKRKLQPGDKMAGRHGNKGVISKINPIEDMPFLPNGQAVDIVLNPLGVPSRMNVGQILETHLGWACAGIGDMINEALEVYKEDGNVTALREAVQHGYGDDITLPRKNDELIELAGNVIRGVPIATPVFDGAREPDIVTMLEKAGLHSSGQVTLHDGRTGDQFTRQVTVGYKYLLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1316

[Close]

BLAST of mRNA_P-canaliculata_contig102382.378.1 vs. uniprot
Match: A0A420WI64_9PROT (DNA-directed RNA polymerase subunit beta n=3 Tax=Robiginitomaculaceae TaxID=2800062 RepID=A0A420WI64_9PROT)

HSP 1 Score: 591 bits (1523), Expect = 1.670e-198
Identity = 286/327 (87.46%), Postives = 307/327 (93.88%), Query Frame = 0

Query:    1 MSKNAVSGPRGFKKGPVTEENLNDIPRSDWWRIGVDDEQAIGELEALKEQYDTSKGRLDARFEDKVDKLQRGDELPPGVMKMVKVFVAVKRKLQPGDKMAGRHGNKGVISKINPVEDMPYLETGQAVDIVLNPLGVPSRMNVGQILETHLGWACAGIGKLIDDALETYKVDNDMAALREAVQHGYGDGEVLPRKNDEIIELAGNVTRGIPIATPVFDGAREPDIVTMLERAGLHSSGQMVLNDGRTGEKFTRPVTVGYKYLLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 327
            M KNAVSGPRGFKKGPVTEE LNDIPRSDWWRIGVDDE+AIGELEALKEQYD+SK RLDARFEDKVDKLQRGDELPPGVMKMVKVFVAVKRKLQPGDKMAGRHGNKGVISKINP+EDMP+L+ G AVDIVLNPLGVPSRMNVGQILETHLGWAC+G+GK+ID+ALE YK D  +  LR  +QH YG+GE +P KN++I+ELAGN+T+G+PIATPVFDGAREPDIV MLE+AGLHSSGQ+ L DGRTGEKFTR VTVGYKYLLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV
Sbjct:  991 MGKNAVSGPRGFKKGPVTEETLNDIPRSDWWRIGVDDEKAIGELEALKEQYDSSKARLDARFEDKVDKLQRGDELPPGVMKMVKVFVAVKRKLQPGDKMAGRHGNKGVISKINPIEDMPFLDDGTAVDIVLNPLGVPSRMNVGQILETHLGWACSGVGKMIDNALEQYKADGKIEDLRGTLQHAYGEGEEIPEKNEDILELAGNLTKGVPIATPVFDGAREPDIVKMLEKAGLHSSGQVSLYDGRTGEKFTRQVTVGYKYLLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1317

[Close]

BLAST of mRNA_P-canaliculata_contig102382.378.1 vs. uniprot
Match: A0A848V268_9PROT (DNA-directed RNA polymerase subunit beta n=1 Tax=Hellea sp. TaxID=2715692 RepID=A0A848V268_9PROT)

HSP 1 Score: 578 bits (1490), Expect = 1.280e-193
Identity = 279/327 (85.32%), Postives = 304/327 (92.97%), Query Frame = 0

Query:    1 MSKNAVSGPRGFKKGPVTEENLNDIPRSDWWRIGVDDEQAIGELEALKEQYDTSKGRLDARFEDKVDKLQRGDELPPGVMKMVKVFVAVKRKLQPGDKMAGRHGNKGVISKINPVEDMPYLETGQAVDIVLNPLGVPSRMNVGQILETHLGWACAGIGKLIDDALETYKVDNDMAALREAVQHGYGDGEVLPRKNDEIIELAGNVTRGIPIATPVFDGAREPDIVTMLERAGLHSSGQMVLNDGRTGEKFTRPVTVGYKYLLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 327
            + K AVSGPRGFKKGP+TEENL+DIPRSDWWRIG++DE+AIGELEALKEQYDTSK RLDARF+DKVDKLQRGDELPPGVMKMVKVFVAVKRKLQPGDKMAGRHGNKGVISKINP+EDMP+L TGQ VDIVLNPLGVPSRMNVGQILETHLGWAC+G+GKLIDDAL+TYK +  MA ++EA+   YG+G  +PRKNDE++ELAGN+T G+PIATPVFDGAREPDIV  L+ AGL  SGQ+ L DGRTGE+F RPVTVGYKYLLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV
Sbjct:  989 IGKTAVSGPRGFKKGPITEENLDDIPRSDWWRIGINDEKAIGELEALKEQYDTSKARLDARFDDKVDKLQRGDELPPGVMKMVKVFVAVKRKLQPGDKMAGRHGNKGVISKINPIEDMPFLATGQGVDIVLNPLGVPSRMNVGQILETHLGWACSGVGKLIDDALKTYKAEGSMAPVKEALTIAYGEGAEMPRKNDELLELAGNLTNGVPIATPVFDGAREPDIVETLKSAGLTESGQVDLYDGRTGERFIRPVTVGYKYLLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1315

[Close]

BLAST of mRNA_P-canaliculata_contig102382.378.1 vs. uniprot
Match: UPI0003750290 (DNA-directed RNA polymerase subunit beta n=1 Tax=Robiginitomaculum antarcticum TaxID=437507 RepID=UPI0003750290)

HSP 1 Score: 569 bits (1466), Expect = 4.580e-190
Identity = 282/327 (86.24%), Postives = 300/327 (91.74%), Query Frame = 0

Query:    1 MSKNAVSGPRGFKKGPVTEENLNDIPRSDWWRIGVDDEQAIGELEALKEQYDTSKGRLDARFEDKVDKLQRGDELPPGVMKMVKVFVAVKRKLQPGDKMAGRHGNKGVISKINPVEDMPYLETGQAVDIVLNPLGVPSRMNVGQILETHLGWACAGIGKLIDDALETYKVDNDMAALREAVQHGYGDGEVLPRKNDEIIELAGNVTRGIPIATPVFDGAREPDIVTMLERAGLHSSGQMVLNDGRTGEKFTRPVTVGYKYLLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 327
            M+KNAVSGPRGFKKGPVT ENL DIPRSDWWRIGVDDE+AIGE+EALKEQYDTSK RLDARFEDKVDKLQRGDELPPGVMK VKVFVAVKRKLQPGDKMAGRHGNKGVISKINP+EDMPYL+ G  VD+VLNPLGVPSRMNVGQILETHLGWACAGIGK+ID+AL+TY  +  M  L+ A+ + Y  GE LPRKN E+IELAGN+ RG+PIATPVFDGA E DIV MLE+AGL SSGQ+ LNDGRTGE FTRPVTVGYKYLLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV
Sbjct:  989 MNKNAVSGPRGFKKGPVTLENLTDIPRSDWWRIGVDDEKAIGEMEALKEQYDTSKARLDARFEDKVDKLQRGDELPPGVMKSVKVFVAVKRKLQPGDKMAGRHGNKGVISKINPIEDMPYLDDGTPVDLVLNPLGVPSRMNVGQILETHLGWACAGIGKMIDEALQTYHAEGSMEPLKLALNNAYEGGE-LPRKNSELIELAGNLKRGMPIATPVFDGADETDIVHMLEKAGLTSSGQVRLNDGRTGEPFTRPVTVGYKYLLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1314

[Close]

BLAST of mRNA_P-canaliculata_contig102382.378.1 vs. uniprot
Match: A0A520XUS5_9ACTN (DNA-directed RNA polymerase subunit beta n=2 Tax=Bacteria TaxID=2 RepID=A0A520XUS5_9ACTN)

HSP 1 Score: 558 bits (1439), Expect = 4.640e-186
Identity = 276/327 (84.40%), Postives = 295/327 (90.21%), Query Frame = 0

Query:    1 MSKNAVSGPRGFKKGPVTEENLNDIPRSDWWRIGVDDEQAIGELEALKEQYDTSKGRLDARFEDKVDKLQRGDELPPGVMKMVKVFVAVKRKLQPGDKMAGRHGNKGVISKINPVEDMPYLETGQAVDIVLNPLGVPSRMNVGQILETHLGWACAGIGKLIDDALETYKVDNDMAALREAVQHGYGDGEVLPRKNDEIIELAGNVTRGIPIATPVFDGAREPDIVTMLERAGLHSSGQMVLNDGRTGEKFTRPVTVGYKYLLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 327
            + K AVSGPRG+KKGPVTEENL+++PRSDWWRIGVDDE+ IGELEALK QYDTSK +LDARFEDKVDKLQRGDELPPGVMKMVKVFVAVKRKLQPGDKMAGRHGNKGVISKINP+EDMPYL  G AVDIVLNPLGVPSRMNVGQILETHLGWACAG GK+IDDALE Y+   DM  L+  ++  Y +G  LP+KNDE+ ELAGN+  G+PIATPVFDGA E DIV MLE+AGL SSGQ  L DGRTGEKFTRPVTVGYKYLLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV
Sbjct:  989 LGKKAVSGPRGYKKGPVTEENLSEVPRSDWWRIGVDDEKTIGELEALKTQYDTSKAKLDARFEDKVDKLQRGDELPPGVMKMVKVFVAVKRKLQPGDKMAGRHGNKGVISKINPIEDMPYLSDGTAVDIVLNPLGVPSRMNVGQILETHLGWACAGTGKMIDDALEAYRASGDMKPLKMQLESTY-EGIDLPKKNDELTELAGNLKAGVPIATPVFDGAHEGDIVEMLEKAGLTSSGQERLVDGRTGEKFTRPVTVGYKYLLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1314

[Close]

BLAST of mRNA_P-canaliculata_contig102382.378.1 vs. uniprot
Match: A0A2G2GE41_9PROT (DNA-directed RNA polymerase subunit beta n=2 Tax=Robiginitomaculum sp. TaxID=2030823 RepID=A0A2G2GE41_9PROT)

HSP 1 Score: 558 bits (1439), Expect = 4.640e-186
Identity = 277/327 (84.71%), Postives = 298/327 (91.13%), Query Frame = 0

Query:    1 MSKNAVSGPRGFKKGPVTEENLNDIPRSDWWRIGVDDEQAIGELEALKEQYDTSKGRLDARFEDKVDKLQRGDELPPGVMKMVKVFVAVKRKLQPGDKMAGRHGNKGVISKINPVEDMPYLETGQAVDIVLNPLGVPSRMNVGQILETHLGWACAGIGKLIDDALETYKVDNDMAALREAVQHGYGDGEVLPRKNDEIIELAGNVTRGIPIATPVFDGAREPDIVTMLERAGLHSSGQMVLNDGRTGEKFTRPVTVGYKYLLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 327
            + K AVSGPRGF KGPVTEE L +IPRSDWWRIGVDDE+AIGELEALK QYDTSK  LDARFEDKVDKLQRGDEL PGVMKMVKVFVAVKRKLQPGDKMAGRHGNKGVISKINPVEDMPYL  GQAVDIVLNPLGVPSRMN+GQILETHLGWACAG+GKLIDDAL+ Y++  DMA L+ ++++ Y +G  LP K++E+IELAGNVT G+PIATPVFDGA E DIV ML +AGL SSGQ +L DGRTGE+FTRPVTVGYKYLLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV
Sbjct:  989 LGKKAVSGPRGFSKGPVTEETLGEIPRSDWWRIGVDDEKAIGELEALKTQYDTSKATLDARFEDKVDKLQRGDELAPGVMKMVKVFVAVKRKLQPGDKMAGRHGNKGVISKINPVEDMPYLSNGQAVDIVLNPLGVPSRMNIGQILETHLGWACAGMGKLIDDALKNYRLSGDMAPLKLSLENAY-EGIDLPSKDEELIELAGNVTGGVPIATPVFDGAHEEDIVEMLLKAGLTSSGQEMLTDGRTGEQFTRPVTVGYKYLLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1314

[Close]

BLAST of mRNA_P-canaliculata_contig102382.378.1 vs. uniprot
Match: A0A2G2MQC3_9PROT (DNA-directed RNA polymerase subunit beta n=4 Tax=Robiginitomaculum sp. TaxID=2030823 RepID=A0A2G2MQC3_9PROT)

HSP 1 Score: 550 bits (1417), Expect = 8.620e-183
Identity = 271/327 (82.87%), Postives = 290/327 (88.69%), Query Frame = 0

Query:    1 MSKNAVSGPRGFKKGPVTEENLNDIPRSDWWRIGVDDEQAIGELEALKEQYDTSKGRLDARFEDKVDKLQRGDELPPGVMKMVKVFVAVKRKLQPGDKMAGRHGNKGVISKINPVEDMPYLETGQAVDIVLNPLGVPSRMNVGQILETHLGWACAGIGKLIDDALETYKVDNDMAALREAVQHGYGDGEVLPRKNDEIIELAGNVTRGIPIATPVFDGAREPDIVTMLERAGLHSSGQMVLNDGRTGEKFTRPVTVGYKYLLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 327
            M K AVSGPRGF+KGPV+EE L++IPRSDWWRIGV DE+AI ELEAL+ QYDTSK +LDARFEDKVDKLQRGDELPPGVMKMVKVFVAVKRKLQPGDKMAGRHGNKGVISKINPVEDMPYL  G  VDIVLNPLGVPSRMNVGQILETH+GWACAG GK+ID+AL+ YK   DM  LR  ++  Y D   LP+KN E+ ELAGN+ +G+PIATPVFDGA E DIV MLER GL SSGQ  L DGRTGE+FTRPVTVGYKYLLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV
Sbjct:  989 MGKKAVSGPRGFRKGPVSEETLDEIPRSDWWRIGVADEKAISELEALRVQYDTSKAKLDARFEDKVDKLQRGDELPPGVMKMVKVFVAVKRKLQPGDKMAGRHGNKGVISKINPVEDMPYLADGTPVDIVLNPLGVPSRMNVGQILETHMGWACAGAGKMIDEALKAYKRSGDMTPLRLTLEDTYKDASELPKKNSELEELAGNLVKGVPIATPVFDGAHEEDIVEMLERVGLTSSGQEYLRDGRTGEQFTRPVTVGYKYLLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1315

[Close]

BLAST of mRNA_P-canaliculata_contig102382.378.1 vs. uniprot
Match: A0A3C2E9U3_9PROT (DNA-directed RNA polymerase subunit beta (Fragment) n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C2E9U3_9PROT)

HSP 1 Score: 511 bits (1317), Expect = 1.700e-173
Identity = 247/327 (75.54%), Postives = 283/327 (86.54%), Query Frame = 0

Query:    1 MSKNAVSGPRGFKKGPVTEENLNDIPRSDWWRIGVDDEQAIGELEALKEQYDTSKGRLDARFEDKVDKLQRGDELPPGVMKMVKVFVAVKRKLQPGDKMAGRHGNKGVISKINPVEDMPYLETGQAVDIVLNPLGVPSRMNVGQILETHLGWACAGIGKLIDDALETYKVDNDMAALREAVQHGYGDGEVLPRKNDEIIELAGNVTRGIPIATPVFDGAREPDIVTMLERAGLHSSGQMVLNDGRTGEKFTRPVTVGYKYLLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 327
            + K+A SGPRGFKKG ++ E L+D+P+S WW+IG+DDE+ + E+EALK+QYD SK RLD RFEDKVDKLQRGDELPPGVMKMVKVFVAVKRKLQPGDKMAGRHGNKGVISKI PVEDMP+LE G  VD+VLNPLGVPSRMNVGQILETHLGWAC G+GK I  A E Y+ D ++  L+ A+++ YG  E +P  +DE+ EL+ N+  G+PIATPVFDGAREPDIV  LE AGL SSGQ+VL+DG+TG++F R VTVG  ++LKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV
Sbjct:  463 IGKDATSGPRGFKKGKISAETLDDVPQSQWWKIGLDDEKVMAEVEALKKQYDDSKARLDRRFEDKVDKLQRGDELPPGVMKMVKVFVAVKRKLQPGDKMAGRHGNKGVISKIAPVEDMPFLEDGTPVDVVLNPLGVPSRMNVGQILETHLGWACVGLGKQIGQAYEAYERDGNIKPLKAALENAYGQNEEMPETDDELAELSRNLMPGVPIATPVFDGAREPDIVAHLEAAGLDSSGQVVLHDGQTGDQFRRKVTVGIMHILKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 789

[Close]

BLAST of mRNA_P-canaliculata_contig102382.378.1 vs. uniprot
Match: A0A2U2BRC8_9PROT (DNA-directed RNA polymerase subunit beta n=1 Tax=Marinicauda salina TaxID=2135793 RepID=A0A2U2BRC8_9PROT)

HSP 1 Score: 518 bits (1333), Expect = 2.250e-170
Identity = 249/327 (76.15%), Postives = 284/327 (86.85%), Query Frame = 0

Query:    1 MSKNAVSGPRGFKKGPVTEENLNDIPRSDWWRIGVDDEQAIGELEALKEQYDTSKGRLDARFEDKVDKLQRGDELPPGVMKMVKVFVAVKRKLQPGDKMAGRHGNKGVISKINPVEDMPYLETGQAVDIVLNPLGVPSRMNVGQILETHLGWACAGIGKLIDDALETYKVDNDMAALREAVQHGYGDGEVLPRKNDEIIELAGNVTRGIPIATPVFDGAREPDIVTMLERAGLHSSGQMVLNDGRTGEKFTRPVTVGYKYLLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 327
            + K AVSGP+GFKKG V+EE+L D PRS WW+IG+DDEQA+ E+EALK+QYD SK RLD+RFEDKV+KLQRGDE+PPGVMKMVKVFVAVKRKLQPGDKMAGRHGNKGVISKI P+EDMP+ + G  VD+VLNPLGVPSRMNVGQILETHLGWAC G+G+ I +A E YK D  + AL+  ++  YGD + LP   +E+ ELA N++ G+PIATPVFDGAREPD+V ML+RAGL  SGQ+ L DG+TG+ F RPVTVG K+LLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV
Sbjct:  989 VGKKAVSGPKGFKKGQVSEESLADAPRSQWWKIGLDDEQAMAEVEALKKQYDESKARLDSRFEDKVEKLQRGDEMPPGVMKMVKVFVAVKRKLQPGDKMAGRHGNKGVISKIAPIEDMPFTDDGTPVDVVLNPLGVPSRMNVGQILETHLGWACKGLGRQIGEAYEAYKRDGKVKALKGVIEEAYGDKQELPSSGEEVSELARNLSNGVPIATPVFDGAREPDVVEMLKRAGLDESGQVTLYDGQTGDAFRRPVTVGIKHLLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1315

[Close]

BLAST of mRNA_P-canaliculata_contig102382.378.1 vs. uniprot
Match: A0A2D8BV33_9PROT (DNA-directed RNA polymerase subunit beta n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A2D8BV33_9PROT)

HSP 1 Score: 511 bits (1317), Expect = 4.940e-168
Identity = 247/327 (75.54%), Postives = 283/327 (86.54%), Query Frame = 0

Query:    1 MSKNAVSGPRGFKKGPVTEENLNDIPRSDWWRIGVDDEQAIGELEALKEQYDTSKGRLDARFEDKVDKLQRGDELPPGVMKMVKVFVAVKRKLQPGDKMAGRHGNKGVISKINPVEDMPYLETGQAVDIVLNPLGVPSRMNVGQILETHLGWACAGIGKLIDDALETYKVDNDMAALREAVQHGYGDGEVLPRKNDEIIELAGNVTRGIPIATPVFDGAREPDIVTMLERAGLHSSGQMVLNDGRTGEKFTRPVTVGYKYLLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 327
            + K+A SGPRGFKKG ++ E L+D+P+S WW+IG+DDE+ + E+EALK+QYD SK RLD RFEDKVDKLQRGDELPPGVMKMVKVFVAVKRKLQPGDKMAGRHGNKGVISKI PVEDMP+LE G  VD+VLNPLGVPSRMNVGQILETHLGWAC G+GK I  A E Y+ D ++  L+ A+++ YG  E +P  +DE+ EL+ N+  G+PIATPVFDGAREPDIV  LE AGL SSGQ+VL+DG+TG++F R VTVG  ++LKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV
Sbjct:  987 IGKDATSGPRGFKKGKISAETLDDVPQSQWWKIGLDDEKVMAEVEALKKQYDDSKARLDRRFEDKVDKLQRGDELPPGVMKMVKVFVAVKRKLQPGDKMAGRHGNKGVISKIAPVEDMPFLEDGTPVDVVLNPLGVPSRMNVGQILETHLGWACVGLGKQIGQAYEAYERDGNIKPLKAALENAYGQNEEMPETDDELAELSRNLMPGVPIATPVFDGAREPDIVAHLEAAGLDSSGQVVLHDGQTGDQFRRKVTVGIMHILKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1313

The following BLAST results are available for this feature:

BLAST of mRNA_P-canaliculata_contig102382.378.1 vs. uniprot

BLAST of mRNA_P-canaliculata_contig102382.378.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A8J3G0I5_9PROT	2.090e-199	87.46	DNA-directed RNA polymerase subunit beta n=1 Tax=A...	[more]
A0A420WI64_9PROT	1.670e-198	87.46	DNA-directed RNA polymerase subunit beta n=3 Tax=R...	[more]
A0A848V268_9PROT	1.280e-193	85.32	DNA-directed RNA polymerase subunit beta n=1 Tax=H...	[more]
UPI0003750290	4.580e-190	86.24	DNA-directed RNA polymerase subunit beta n=1 Tax=R...	[more]
A0A520XUS5_9ACTN	4.640e-186	84.40	DNA-directed RNA polymerase subunit beta n=2 Tax=B...	[more]
A0A2G2GE41_9PROT	4.640e-186	84.71	DNA-directed RNA polymerase subunit beta n=2 Tax=R...	[more]
A0A2G2MQC3_9PROT	8.620e-183	82.87	DNA-directed RNA polymerase subunit beta n=4 Tax=R...	[more]
A0A3C2E9U3_9PROT	1.700e-173	75.54	DNA-directed RNA polymerase subunit beta (Fragment...	[more]
A0A2U2BRC8_9PROT	2.250e-170	76.15	DNA-directed RNA polymerase subunit beta n=1 Tax=M...	[more]
A0A2D8BV33_9PROT	4.940e-168	75.54	DNA-directed RNA polymerase subunit beta n=3 Tax=A...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007641	RNA polymerase Rpb2, domain 7	PFAM	PF04560	RNA_pol_Rpb2_7	coord: 295..326 e-value: 2.3E-15 score: 56.8
IPR037033	DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily	GENE3D	2.40.270.10		coord: 68..271 e-value: 3.0E-75 score: 255.2
IPR007120	DNA-directed RNA polymerase, subunit 2, hybrid-binding domain	PFAM	PF00562	RNA_pol_Rpb2_6	coord: 57..293 e-value: 7.6E-83 score: 278.7
None	No IPR available	GENE3D	3.90.1800.10		coord: 281..327 e-value: 2.6E-11 score: 45.7
None	No IPR available	PANTHER	PTHR20856:SF20	DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA	coord: 63..327
None	No IPR available	SUPERFAMILY	64484	beta and beta-prime subunits of DNA dependent RNA-polymerase	coord: 71..327
IPR015712	DNA-directed RNA polymerase, subunit 2	PANTHER	PTHR20856	DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2	coord: 63..327
IPR007121	RNA polymerase, beta subunit, conserved site	PROSITE	PS01166	RNA_POL_BETA	coord: 96..108

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-canaliculata_contig102382	contig	P-canaliculata_contig102382:2..982 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Pelvetia canaliculata dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_P-canaliculata_contig102382.378.1	mRNA_P-canaliculata_contig102382.378.1	Pelvetia canaliculata dioecious	mRNA	P-canaliculata_contig102382 2..994 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_P-canaliculata_contig102382.378.1 ID=prot_P-canaliculata_contig102382.378.1|Name=mRNA_P-canaliculata_contig102382.378.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=327bp
MSKNAVSGPRGFKKGPVTEENLNDIPRSDWWRIGVDDEQAIGELEALKEQ
YDTSKGRLDARFEDKVDKLQRGDELPPGVMKMVKVFVAVKRKLQPGDKMA
GRHGNKGVISKINPVEDMPYLETGQAVDIVLNPLGVPSRMNVGQILETHL
GWACAGIGKLIDDALETYKVDNDMAALREAVQHGYGDGEVLPRKNDEIIE
LAGNVTRGIPIATPVFDGAREPDIVTMLERAGLHSSGQMVLNDGRTGEKF
TRPVTVGYKYLLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFG
EMEVWALEAYGAAYTLQEMLTVKSDDV

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR007641	RNA_pol_Rpb2_7
IPR037033	DNA-dir_RNAP_su2_hyb_sf
IPR007120	DNA-dir_RNAP_su2_dom
IPR015712	DNA-dir_RNA_pol_su2
IPR007121	RNA_pol_bsu_CS