mRNA_P-canaliculata_contig102382.378.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig102382.378.1
Unique NamemRNA_P-canaliculata_contig102382.378.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig102382.378.1 vs. uniprot
Match: A0A420WI64_9PROT (DNA-directed RNA polymerase subunit beta n=3 Tax=Robiginitomaculaceae TaxID=2800062 RepID=A0A420WI64_9PROT)

HSP 1 Score: 596 bits (1537), Expect = 1.620e-200
Identity = 289/330 (87.58%), Postives = 310/330 (93.94%), Query Frame = 1
Query:    4 KTLMSKNAVSGPRGFKKGPVTEENLNDIPRSDWWRIGVDDEQAIGELEALKEQYDTSKGRLDARFEDKVDKLQRGDELPPGVMKMVKVFVAVKRKLQPGDKMAGRHGNKGVISKINPVEDMPYLETGQAVDIVLNPLGVPSRMNVGQILETHLGWACAGIGKLIDDALETYKVDNDMAALREAVQHGYGDGEVLPRKNDEIIELAGNVTRGIPIATPVFDGAREPDIVTMLERAGLHSSGQMVLNDGRTGEKFTRPVTVGYKYLLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 993
            KTLM KNAVSGPRGFKKGPVTEE LNDIPRSDWWRIGVDDE+AIGELEALKEQYD+SK RLDARFEDKVDKLQRGDELPPGVMKMVKVFVAVKRKLQPGDKMAGRHGNKGVISKINP+EDMP+L+ G AVDIVLNPLGVPSRMNVGQILETHLGWAC+G+GK+ID+ALE YK D  +  LR  +QH YG+GE +P KN++I+ELAGN+T+G+PIATPVFDGAREPDIV MLE+AGLHSSGQ+ L DGRTGEKFTR VTVGYKYLLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV
Sbjct:  988 KTLMGKNAVSGPRGFKKGPVTEETLNDIPRSDWWRIGVDDEKAIGELEALKEQYDSSKARLDARFEDKVDKLQRGDELPPGVMKMVKVFVAVKRKLQPGDKMAGRHGNKGVISKINPIEDMPFLDDGTAVDIVLNPLGVPSRMNVGQILETHLGWACSGVGKMIDNALEQYKADGKIEDLRGTLQHAYGEGEEIPEKNEDILELAGNLTKGVPIATPVFDGAREPDIVKMLEKAGLHSSGQVSLYDGRTGEKFTRQVTVGYKYLLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1317          
BLAST of mRNA_P-canaliculata_contig102382.378.1 vs. uniprot
Match: A0A8J3G0I5_9PROT (DNA-directed RNA polymerase subunit beta n=1 Tax=Algimonas arctica TaxID=1479486 RepID=A0A8J3G0I5_9PROT)

HSP 1 Score: 595 bits (1534), Expect = 4.430e-200
Identity = 287/328 (87.50%), Postives = 311/328 (94.82%), Query Frame = 1
Query:   10 LMSKNAVSGPRGFKKGPVTEENLNDIPRSDWWRIGVDDEQAIGELEALKEQYDTSKGRLDARFEDKVDKLQRGDELPPGVMKMVKVFVAVKRKLQPGDKMAGRHGNKGVISKINPVEDMPYLETGQAVDIVLNPLGVPSRMNVGQILETHLGWACAGIGKLIDDALETYKVDNDMAALREAVQHGYGDGEVLPRKNDEIIELAGNVTRGIPIATPVFDGAREPDIVTMLERAGLHSSGQMVLNDGRTGEKFTRPVTVGYKYLLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 993
            LM K+AVSGPRGFKKGP+T+E L+++PRSDWWRIG+DDE+AIGELEALK QYDTSK RLDARF+DKVDKLQRGD+LPPGVMKMVKVFVAVKRKLQPGDKMAGRHGNKGVISKINP+EDMP+L  GQAVDIVLNPLGVPSRMNVGQILETHLGWACAGIG +I++ALE YK D ++ ALREAVQHGYGD   LPRKNDE+IELAGNV RG+PIATPVFDGAREPDIVTMLE+AGLHSSGQ+ L+DGRTG++FTR VTVGYKYLLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV
Sbjct:  989 LMGKSAVSGPRGFKKGPITDETLDEVPRSDWWRIGLDDEKAIGELEALKSQYDTSKARLDARFDDKVDKLQRGDDLPPGVMKMVKVFVAVKRKLQPGDKMAGRHGNKGVISKINPIEDMPFLPNGQAVDIVLNPLGVPSRMNVGQILETHLGWACAGIGDMINEALEVYKEDGNVTALREAVQHGYGDDITLPRKNDELIELAGNVIRGVPIATPVFDGAREPDIVTMLEKAGLHSSGQVTLHDGRTGDQFTRQVTVGYKYLLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1316          
BLAST of mRNA_P-canaliculata_contig102382.378.1 vs. uniprot
Match: A0A848V268_9PROT (DNA-directed RNA polymerase subunit beta n=1 Tax=Hellea sp. TaxID=2715692 RepID=A0A848V268_9PROT)

HSP 1 Score: 584 bits (1505), Expect = 8.880e-196
Identity = 282/331 (85.20%), Postives = 308/331 (93.05%), Query Frame = 1
Query:    1 KKTLMSKNAVSGPRGFKKGPVTEENLNDIPRSDWWRIGVDDEQAIGELEALKEQYDTSKGRLDARFEDKVDKLQRGDELPPGVMKMVKVFVAVKRKLQPGDKMAGRHGNKGVISKINPVEDMPYLETGQAVDIVLNPLGVPSRMNVGQILETHLGWACAGIGKLIDDALETYKVDNDMAALREAVQHGYGDGEVLPRKNDEIIELAGNVTRGIPIATPVFDGAREPDIVTMLERAGLHSSGQMVLNDGRTGEKFTRPVTVGYKYLLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 993
            +KTL+ K AVSGPRGFKKGP+TEENL+DIPRSDWWRIG++DE+AIGELEALKEQYDTSK RLDARF+DKVDKLQRGDELPPGVMKMVKVFVAVKRKLQPGDKMAGRHGNKGVISKINP+EDMP+L TGQ VDIVLNPLGVPSRMNVGQILETHLGWAC+G+GKLIDDAL+TYK +  MA ++EA+   YG+G  +PRKNDE++ELAGN+T G+PIATPVFDGAREPDIV  L+ AGL  SGQ+ L DGRTGE+F RPVTVGYKYLLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV
Sbjct:  985 RKTLIGKTAVSGPRGFKKGPITEENLDDIPRSDWWRIGINDEKAIGELEALKEQYDTSKARLDARFDDKVDKLQRGDELPPGVMKMVKVFVAVKRKLQPGDKMAGRHGNKGVISKINPIEDMPFLATGQGVDIVLNPLGVPSRMNVGQILETHLGWACSGVGKLIDDALKTYKAEGSMAPVKEALTIAYGEGAEMPRKNDELLELAGNLTNGVPIATPVFDGAREPDIVETLKSAGLTESGQVDLYDGRTGERFIRPVTVGYKYLLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1315          
BLAST of mRNA_P-canaliculata_contig102382.378.1 vs. uniprot
Match: UPI0003750290 (DNA-directed RNA polymerase subunit beta n=1 Tax=Robiginitomaculum antarcticum TaxID=437507 RepID=UPI0003750290)

HSP 1 Score: 571 bits (1471), Expect = 9.740e-191
Identity = 283/328 (86.28%), Postives = 301/328 (91.77%), Query Frame = 1
Query:   10 LMSKNAVSGPRGFKKGPVTEENLNDIPRSDWWRIGVDDEQAIGELEALKEQYDTSKGRLDARFEDKVDKLQRGDELPPGVMKMVKVFVAVKRKLQPGDKMAGRHGNKGVISKINPVEDMPYLETGQAVDIVLNPLGVPSRMNVGQILETHLGWACAGIGKLIDDALETYKVDNDMAALREAVQHGYGDGEVLPRKNDEIIELAGNVTRGIPIATPVFDGAREPDIVTMLERAGLHSSGQMVLNDGRTGEKFTRPVTVGYKYLLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 993
            LM+KNAVSGPRGFKKGPVT ENL DIPRSDWWRIGVDDE+AIGE+EALKEQYDTSK RLDARFEDKVDKLQRGDELPPGVMK VKVFVAVKRKLQPGDKMAGRHGNKGVISKINP+EDMPYL+ G  VD+VLNPLGVPSRMNVGQILETHLGWACAGIGK+ID+AL+TY  +  M  L+ A+ + Y  GE LPRKN E+IELAGN+ RG+PIATPVFDGA E DIV MLE+AGL SSGQ+ LNDGRTGE FTRPVTVGYKYLLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV
Sbjct:  988 LMNKNAVSGPRGFKKGPVTLENLTDIPRSDWWRIGVDDEKAIGEMEALKEQYDTSKARLDARFEDKVDKLQRGDELPPGVMKSVKVFVAVKRKLQPGDKMAGRHGNKGVISKINPIEDMPYLDDGTPVDLVLNPLGVPSRMNVGQILETHLGWACAGIGKMIDEALQTYHAEGSMEPLKLALNNAYEGGE-LPRKNSELIELAGNLKRGMPIATPVFDGADETDIVHMLEKAGLTSSGQVRLNDGRTGEPFTRPVTVGYKYLLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1314          
BLAST of mRNA_P-canaliculata_contig102382.378.1 vs. uniprot
Match: A0A2G2GE41_9PROT (DNA-directed RNA polymerase subunit beta n=2 Tax=Robiginitomaculum sp. TaxID=2030823 RepID=A0A2G2GE41_9PROT)

HSP 1 Score: 563 bits (1450), Expect = 1.270e-187
Identity = 280/331 (84.59%), Postives = 301/331 (90.94%), Query Frame = 1
Query:    1 KKTLMSKNAVSGPRGFKKGPVTEENLNDIPRSDWWRIGVDDEQAIGELEALKEQYDTSKGRLDARFEDKVDKLQRGDELPPGVMKMVKVFVAVKRKLQPGDKMAGRHGNKGVISKINPVEDMPYLETGQAVDIVLNPLGVPSRMNVGQILETHLGWACAGIGKLIDDALETYKVDNDMAALREAVQHGYGDGEVLPRKNDEIIELAGNVTRGIPIATPVFDGAREPDIVTMLERAGLHSSGQMVLNDGRTGEKFTRPVTVGYKYLLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 993
            K TL+ K AVSGPRGF KGPVTEE L +IPRSDWWRIGVDDE+AIGELEALK QYDTSK  LDARFEDKVDKLQRGDEL PGVMKMVKVFVAVKRKLQPGDKMAGRHGNKGVISKINPVEDMPYL  GQAVDIVLNPLGVPSRMN+GQILETHLGWACAG+GKLIDDAL+ Y++  DMA L+ ++++ Y +G  LP K++E+IELAGNVT G+PIATPVFDGA E DIV ML +AGL SSGQ +L DGRTGE+FTRPVTVGYKYLLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV
Sbjct:  985 KLTLLGKKAVSGPRGFSKGPVTEETLGEIPRSDWWRIGVDDEKAIGELEALKTQYDTSKATLDARFEDKVDKLQRGDELAPGVMKMVKVFVAVKRKLQPGDKMAGRHGNKGVISKINPVEDMPYLSNGQAVDIVLNPLGVPSRMNIGQILETHLGWACAGMGKLIDDALKNYRLSGDMAPLKLSLENAY-EGIDLPSKDEELIELAGNVTGGVPIATPVFDGAHEEDIVEMLLKAGLTSSGQEMLTDGRTGEQFTRPVTVGYKYLLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1314          
BLAST of mRNA_P-canaliculata_contig102382.378.1 vs. uniprot
Match: A0A520XUS5_9ACTN (DNA-directed RNA polymerase subunit beta n=2 Tax=Bacteria TaxID=2 RepID=A0A520XUS5_9ACTN)

HSP 1 Score: 561 bits (1447), Expect = 3.540e-187
Identity = 278/330 (84.24%), Postives = 297/330 (90.00%), Query Frame = 1
Query:    4 KTLMSKNAVSGPRGFKKGPVTEENLNDIPRSDWWRIGVDDEQAIGELEALKEQYDTSKGRLDARFEDKVDKLQRGDELPPGVMKMVKVFVAVKRKLQPGDKMAGRHGNKGVISKINPVEDMPYLETGQAVDIVLNPLGVPSRMNVGQILETHLGWACAGIGKLIDDALETYKVDNDMAALREAVQHGYGDGEVLPRKNDEIIELAGNVTRGIPIATPVFDGAREPDIVTMLERAGLHSSGQMVLNDGRTGEKFTRPVTVGYKYLLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 993
            K L+ K AVSGPRG+KKGPVTEENL+++PRSDWWRIGVDDE+ IGELEALK QYDTSK +LDARFEDKVDKLQRGDELPPGVMKMVKVFVAVKRKLQPGDKMAGRHGNKGVISKINP+EDMPYL  G AVDIVLNPLGVPSRMNVGQILETHLGWACAG GK+IDDALE Y+   DM  L+  ++  Y +G  LP+KNDE+ ELAGN+  G+PIATPVFDGA E DIV MLE+AGL SSGQ  L DGRTGEKFTRPVTVGYKYLLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV
Sbjct:  986 KILLGKKAVSGPRGYKKGPVTEENLSEVPRSDWWRIGVDDEKTIGELEALKTQYDTSKAKLDARFEDKVDKLQRGDELPPGVMKMVKVFVAVKRKLQPGDKMAGRHGNKGVISKINPIEDMPYLSDGTAVDIVLNPLGVPSRMNVGQILETHLGWACAGTGKMIDDALEAYRASGDMKPLKMQLESTY-EGIDLPKKNDELTELAGNLKAGVPIATPVFDGAHEGDIVEMLEKAGLTSSGQERLVDGRTGEKFTRPVTVGYKYLLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1314          
BLAST of mRNA_P-canaliculata_contig102382.378.1 vs. uniprot
Match: A0A2G2MQC3_9PROT (DNA-directed RNA polymerase subunit beta n=4 Tax=Robiginitomaculum sp. TaxID=2030823 RepID=A0A2G2MQC3_9PROT)

HSP 1 Score: 554 bits (1427), Expect = 3.340e-184
Identity = 273/329 (82.98%), Postives = 292/329 (88.75%), Query Frame = 1
Query:    7 TLMSKNAVSGPRGFKKGPVTEENLNDIPRSDWWRIGVDDEQAIGELEALKEQYDTSKGRLDARFEDKVDKLQRGDELPPGVMKMVKVFVAVKRKLQPGDKMAGRHGNKGVISKINPVEDMPYLETGQAVDIVLNPLGVPSRMNVGQILETHLGWACAGIGKLIDDALETYKVDNDMAALREAVQHGYGDGEVLPRKNDEIIELAGNVTRGIPIATPVFDGAREPDIVTMLERAGLHSSGQMVLNDGRTGEKFTRPVTVGYKYLLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 993
            TLM K AVSGPRGF+KGPV+EE L++IPRSDWWRIGV DE+AI ELEAL+ QYDTSK +LDARFEDKVDKLQRGDELPPGVMKMVKVFVAVKRKLQPGDKMAGRHGNKGVISKINPVEDMPYL  G  VDIVLNPLGVPSRMNVGQILETH+GWACAG GK+ID+AL+ YK   DM  LR  ++  Y D   LP+KN E+ ELAGN+ +G+PIATPVFDGA E DIV MLER GL SSGQ  L DGRTGE+FTRPVTVGYKYLLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV
Sbjct:  987 TLMGKKAVSGPRGFRKGPVSEETLDEIPRSDWWRIGVADEKAISELEALRVQYDTSKAKLDARFEDKVDKLQRGDELPPGVMKMVKVFVAVKRKLQPGDKMAGRHGNKGVISKINPVEDMPYLADGTPVDIVLNPLGVPSRMNVGQILETHMGWACAGAGKMIDEALKAYKRSGDMTPLRLTLEDTYKDASELPKKNSELEELAGNLVKGVPIATPVFDGAHEEDIVEMLERVGLTSSGQEYLRDGRTGEQFTRPVTVGYKYLLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1315          
BLAST of mRNA_P-canaliculata_contig102382.378.1 vs. uniprot
Match: A0A3C2E9U3_9PROT (DNA-directed RNA polymerase subunit beta (Fragment) n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C2E9U3_9PROT)

HSP 1 Score: 513 bits (1321), Expect = 4.970e-174
Identity = 248/331 (74.92%), Postives = 285/331 (86.10%), Query Frame = 1
Query:    1 KKTLMSKNAVSGPRGFKKGPVTEENLNDIPRSDWWRIGVDDEQAIGELEALKEQYDTSKGRLDARFEDKVDKLQRGDELPPGVMKMVKVFVAVKRKLQPGDKMAGRHGNKGVISKINPVEDMPYLETGQAVDIVLNPLGVPSRMNVGQILETHLGWACAGIGKLIDDALETYKVDNDMAALREAVQHGYGDGEVLPRKNDEIIELAGNVTRGIPIATPVFDGAREPDIVTMLERAGLHSSGQMVLNDGRTGEKFTRPVTVGYKYLLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 993
            K  ++ K+A SGPRGFKKG ++ E L+D+P+S WW+IG+DDE+ + E+EALK+QYD SK RLD RFEDKVDKLQRGDELPPGVMKMVKVFVAVKRKLQPGDKMAGRHGNKGVISKI PVEDMP+LE G  VD+VLNPLGVPSRMNVGQILETHLGWAC G+GK I  A E Y+ D ++  L+ A+++ YG  E +P  +DE+ EL+ N+  G+PIATPVFDGAREPDIV  LE AGL SSGQ+VL+DG+TG++F R VTVG  ++LKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV
Sbjct:  459 KDLMIGKDATSGPRGFKKGKISAETLDDVPQSQWWKIGLDDEKVMAEVEALKKQYDDSKARLDRRFEDKVDKLQRGDELPPGVMKMVKVFVAVKRKLQPGDKMAGRHGNKGVISKIAPVEDMPFLEDGTPVDVVLNPLGVPSRMNVGQILETHLGWACVGLGKQIGQAYEAYERDGNIKPLKAALENAYGQNEEMPETDDELAELSRNLMPGVPIATPVFDGAREPDIVAHLEAAGLDSSGQVVLHDGQTGDQFRRKVTVGIMHILKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 789          
BLAST of mRNA_P-canaliculata_contig102382.378.1 vs. uniprot
Match: A0A2U2BRC8_9PROT (DNA-directed RNA polymerase subunit beta n=1 Tax=Marinicauda salina TaxID=2135793 RepID=A0A2U2BRC8_9PROT)

HSP 1 Score: 520 bits (1338), Expect = 4.820e-171
Identity = 250/328 (76.22%), Postives = 285/328 (86.89%), Query Frame = 1
Query:   10 LMSKNAVSGPRGFKKGPVTEENLNDIPRSDWWRIGVDDEQAIGELEALKEQYDTSKGRLDARFEDKVDKLQRGDELPPGVMKMVKVFVAVKRKLQPGDKMAGRHGNKGVISKINPVEDMPYLETGQAVDIVLNPLGVPSRMNVGQILETHLGWACAGIGKLIDDALETYKVDNDMAALREAVQHGYGDGEVLPRKNDEIIELAGNVTRGIPIATPVFDGAREPDIVTMLERAGLHSSGQMVLNDGRTGEKFTRPVTVGYKYLLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 993
            L+ K AVSGP+GFKKG V+EE+L D PRS WW+IG+DDEQA+ E+EALK+QYD SK RLD+RFEDKV+KLQRGDE+PPGVMKMVKVFVAVKRKLQPGDKMAGRHGNKGVISKI P+EDMP+ + G  VD+VLNPLGVPSRMNVGQILETHLGWAC G+G+ I +A E YK D  + AL+  ++  YGD + LP   +E+ ELA N++ G+PIATPVFDGAREPD+V ML+RAGL  SGQ+ L DG+TG+ F RPVTVG K+LLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV
Sbjct:  988 LVGKKAVSGPKGFKKGQVSEESLADAPRSQWWKIGLDDEQAMAEVEALKKQYDESKARLDSRFEDKVEKLQRGDEMPPGVMKMVKVFVAVKRKLQPGDKMAGRHGNKGVISKIAPIEDMPFTDDGTPVDVVLNPLGVPSRMNVGQILETHLGWACKGLGRQIGEAYEAYKRDGKVKALKGVIEEAYGDKQELPSSGEEVSELARNLSNGVPIATPVFDGAREPDVVEMLKRAGLDESGQVTLYDGQTGDAFRRPVTVGIKHLLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 1315          
BLAST of mRNA_P-canaliculata_contig102382.378.1 vs. uniprot
Match: A0A7C2T5F3_9PROT (DNA-directed RNA polymerase subunit beta n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A7C2T5F3_9PROT)

HSP 1 Score: 499 bits (1286), Expect = 7.750e-169
Identity = 248/336 (73.81%), Postives = 281/336 (83.63%), Query Frame = 1
Query:    1 KKTLMSKNAVSGPRGFKKGPVTEENLNDIPRSDWWRIGVDDEQAIGELEALKEQYDTSKGRLDARFEDKVDKLQRGDELPPGVMKMVKVFVAVKRKLQPGDKMAGRHGNKGVISKINPVEDMPYLETGQAVDIVLNPLGVPSRMNVGQILETHLGWACAGIGKLIDDALETYKV-----DNDMAALREAVQHGYGDGEVLPRKNDEIIELAGNVTRGIPIATPVFDGAREPDIVTMLERAGLHSSGQMVLNDGRTGEKFTRPVTVGYKYLLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 993
            K  L+ K AVS P+G  KG + EE L ++ +  WW+IG+ DE A+ E+EALK+QYD S+ RL+ARF DKVDKL+RGDELPPGVMK VKVFVAVKRKLQPGDKMAGRHGNKGVISKI P+EDMP+L  G +VDIVLNPLGVPSRMNVGQILETHLGWAC G+GK I D LE ++      D+  A ++E     YG+ ++LPR NDE+ ELAGN+TRG+PI+TPVFDG REPDIV ML++AGL  SGQ+ L DGRTGEKF R VTVGYKYLLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV
Sbjct:  466 KSLLVGKEAVSAPKGLDKGKINEEGLGELSKGQWWKIGLKDESAMAEVEALKKQYDESRQRLEARFNDKVDKLKRGDELPPGVMKTVKVFVAVKRKLQPGDKMAGRHGNKGVISKIAPIEDMPFLADGTSVDIVLNPLGVPSRMNVGQILETHLGWACRGLGKQIGDVLEQWEAGKSSRDDVGAKIKEI----YGEDQILPRSNDELKELAGNLTRGVPISTPVFDGVREPDIVKMLKKAGLEESGQVDLYDGRTGEKFGRKVTVGYKYLLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV 797          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig102382.378.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A420WI64_9PROT1.620e-20087.58DNA-directed RNA polymerase subunit beta n=3 Tax=R... [more]
A0A8J3G0I5_9PROT4.430e-20087.50DNA-directed RNA polymerase subunit beta n=1 Tax=A... [more]
A0A848V268_9PROT8.880e-19685.20DNA-directed RNA polymerase subunit beta n=1 Tax=H... [more]
UPI00037502909.740e-19186.28DNA-directed RNA polymerase subunit beta n=1 Tax=R... [more]
A0A2G2GE41_9PROT1.270e-18784.59DNA-directed RNA polymerase subunit beta n=2 Tax=R... [more]
A0A520XUS5_9ACTN3.540e-18784.24DNA-directed RNA polymerase subunit beta n=2 Tax=B... [more]
A0A2G2MQC3_9PROT3.340e-18482.98DNA-directed RNA polymerase subunit beta n=4 Tax=R... [more]
A0A3C2E9U3_9PROT4.970e-17474.92DNA-directed RNA polymerase subunit beta (Fragment... [more]
A0A2U2BRC8_9PROT4.820e-17176.22DNA-directed RNA polymerase subunit beta n=1 Tax=M... [more]
A0A7C2T5F3_9PROT7.750e-16973.81DNA-directed RNA polymerase subunit beta n=2 Tax=A... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig102382contigP-canaliculata_contig102382:2..994 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score614.4
Seed ortholog evalue3.1e-173
Seed eggNOG ortholog1121948.AUAC01000001_gene2944
Preferred namerpoB
KEGG rclassRC02795
KEGG koko:K03043,ko:K13797
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020
KEGG ModuleM00183
GOsGO:0000428,GO:0003674,GO:0003824,GO:0003899,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0030880,GO:0032774,GO:0032991,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0061695,GO:0071704,GO:0090304,GO:0097659,GO:0097747,GO:0140098,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234
EggNOG free text desc.DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
EggNOG OGs1MUC4@1224,2TS7S@28211,43WYE@69657,COG0085@1,COG0085@2
EC2.7.7.6
COG Functional cat.K
Best tax levelHyphomonadaceae
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400
Hectar predicted targeting categoryother localisation
Exons1
Model size993
Cds size981
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815597.7296054-CDS-P-canaliculata_contig102382:1..9821622815597.7296054-CDS-P-canaliculata_contig102382:1..982Pelvetia canaliculata dioeciousCDSP-canaliculata_contig102382 2..982 -
1693494157.830009-CDS-P-canaliculata_contig102382:1..9821693494157.830009-CDS-P-canaliculata_contig102382:1..982Pelvetia canaliculata dioeciousCDSP-canaliculata_contig102382 2..982 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815597.7413104-UTR-P-canaliculata_contig102382:982..9941622815597.7413104-UTR-P-canaliculata_contig102382:982..994Pelvetia canaliculata dioeciousUTRP-canaliculata_contig102382 983..994 -
1693494157.8425848-UTR-P-canaliculata_contig102382:982..9941693494157.8425848-UTR-P-canaliculata_contig102382:982..994Pelvetia canaliculata dioeciousUTRP-canaliculata_contig102382 983..994 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig102382.378.1prot_P-canaliculata_contig102382.378.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig102382 2..982 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig102382.378.1

>prot_P-canaliculata_contig102382.378.1 ID=prot_P-canaliculata_contig102382.378.1|Name=mRNA_P-canaliculata_contig102382.378.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=327bp
MSKNAVSGPRGFKKGPVTEENLNDIPRSDWWRIGVDDEQAIGELEALKEQ
YDTSKGRLDARFEDKVDKLQRGDELPPGVMKMVKVFVAVKRKLQPGDKMA
GRHGNKGVISKINPVEDMPYLETGQAVDIVLNPLGVPSRMNVGQILETHL
GWACAGIGKLIDDALETYKVDNDMAALREAVQHGYGDGEVLPRKNDEIIE
LAGNVTRGIPIATPVFDGAREPDIVTMLERAGLHSSGQMVLNDGRTGEKF
TRPVTVGYKYLLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFG
EMEVWALEAYGAAYTLQEMLTVKSDDV
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mRNA from alignment at P-canaliculata_contig102382:2..994-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig102382.378.1 ID=mRNA_P-canaliculata_contig102382.378.1|Name=mRNA_P-canaliculata_contig102382.378.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=993bp|location=Sequence derived from alignment at P-canaliculata_contig102382:2..994- (Pelvetia canaliculata dioecious)
AAGAAAACCCTGATGAGTAAGAACGCTGTGTCCGGACCGCGTGGCTTCAA AAAAGGCCCTGTCACGGAAGAGAACCTCAACGACATTCCGCGCTCTGATT GGTGGCGGATTGGCGTGGATGACGAGCAAGCCATTGGCGAGCTCGAAGCG CTCAAAGAGCAATATGACACCTCCAAAGGGCGCCTTGATGCGCGCTTTGA AGATAAGGTCGATAAGCTGCAACGCGGTGACGAACTCCCGCCGGGCGTGA TGAAGATGGTCAAAGTCTTTGTTGCGGTGAAGCGTAAGCTCCAACCGGGC GATAAAATGGCCGGACGTCACGGCAACAAAGGTGTGATCTCCAAGATTAA CCCGGTTGAAGACATGCCTTACTTGGAAACAGGGCAGGCTGTCGATATCG TGTTGAACCCGCTGGGTGTTCCGTCGCGAATGAACGTCGGGCAGATTCTG GAAACCCATTTGGGTTGGGCCTGTGCCGGTATCGGGAAACTGATCGATGA CGCGCTTGAAACCTATAAGGTCGACAATGATATGGCCGCTCTTAGAGAGG CCGTTCAGCACGGTTATGGCGACGGCGAAGTGTTGCCGCGCAAGAATGAT GAGATCATCGAGCTTGCCGGAAATGTGACGCGCGGTATTCCGATTGCGAC TCCTGTCTTTGACGGTGCGCGCGAGCCGGATATTGTGACCATGCTGGAAC GGGCGGGTCTGCACAGCTCCGGTCAGATGGTGCTAAACGATGGCCGTACG GGTGAGAAATTCACGCGTCCTGTGACGGTTGGGTATAAATACCTGCTCAA GCTTCACCATTTGGTCGACGACAAAATCCATGCCCGCTCAATCGGGCCAT ACTCCCTCGTTACTCAGCAGCCGCTTGGTGGTAAGGCGCAGTTTGGTGGC CAGCGCTTCGGCGAAATGGAAGTCTGGGCCCTCGAAGCTTACGGCGCGGC TTACACGCTGCAGGAAATGCTCACAGTTAAGTCTGATGACGTG
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Coding sequence (CDS) from alignment at P-canaliculata_contig102382:2..994-

>mRNA_P-canaliculata_contig102382.378.1 ID=mRNA_P-canaliculata_contig102382.378.1|Name=mRNA_P-canaliculata_contig102382.378.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1962bp|location=Sequence derived from alignment at P-canaliculata_contig102382:2..994- (Pelvetia canaliculata dioecious)
ATGAGTAAGAACGCTGTGTCCGGACCGCGTGGCTTCAAAAAAGGCCCTGT
CACGGAAGAGAACCTCAACGACATTCCGCGCTCTGATTGGTGGCGGATTG
GCGTGGATGACGAGCAAGCCATTGGCGAGCTCGAAGCGCTCAAAGAGCAA
TATGACACCTCCAAAGGGCGCCTTGATGCGCGCTTTGAAGATAAGGTCGA
TAAGCTGCAACGCGGTGACGAACTCCCGCCGGGCGTGATGAAGATGGTCA
AAGTCTTTGTTGCGGTGAAGCGTAAGCTCCAACCGGGCGATAAAATGGCC
GGACGTCACGGCAACAAAGGTGTGATCTCCAAGATTAACCCGGTTGAAGA
CATGCCTTACTTGGAAACAGGGCAGGCTGTCGATATCGTGTTGAACCCGC
TGGGTGTTCCGTCGCGAATGAACGTCGGGCAGATTCTGGAAACCCATTTG
GGTTGGGCCTGTGCCGGTATCGGGAAACTGATCGATGACGCGCTTGAAAC
CTATAAGGTCGACAATGATATGGCCGCTCTTAGAGAGGCCGTTCAGCACG
GTTATGGCGACGGCGAAGTGTTGCCGCGCAAGAATGATGAGATCATCGAG
CTTGCCGGAAATGTGACGCGCGGTATTCCGATTGCGACTCCTGTCTTTGA
CGGTGCGCGCGAGCCGGATATTGTGACCATGCTGGAACGGGCGGGTCTGC
ACAGCTCCGGTCAGATGGTGCTAAACGATGGCCGTACGGGTGAGAAATTC
ACGCGTCCTGTGACGGTTGGGTATAAATACCTGCTCAAGCTTCACCATTT
GGTCGACGACAAAATCCATGCCCGCTCAATCGGGCCATACTCCCTCGTTA
CTCAGCAGCCGCTTGGTGGTAAGGCGCAGTTTGGTGGCCAGCGCTTCGGC
GAAATGGAAGTCTGGGCCCTCGAAGCTTACGGCGCGGCTTACACGCTGCA
GGAAATGCTCACAGTTAAGTCTGATGACGTGATGAGTAAGAACGCTGTGT
CCGGACCGCGTGGCTTCAAAAAAGGCCCTGTCACGGAAGAGAACCTCAAC
GACATTCCGCGCTCTGATTGGTGGCGGATTGGCGTGGATGACGAGCAAGC
CATTGGCGAGCTCGAAGCGCTCAAAGAGCAATATGACACCTCCAAAGGGC
GCCTTGATGCGCGCTTTGAAGATAAGGTCGATAAGCTGCAACGCGGTGAC
GAACTCCCGCCGGGCGTGATGAAGATGGTCAAAGTCTTTGTTGCGGTGAA
GCGTAAGCTCCAACCGGGCGATAAAATGGCCGGACGTCACGGCAACAAAG
GTGTGATCTCCAAGATTAACCCGGTTGAAGACATGCCTTACTTGGAAACA
GGGCAGGCTGTCGATATCGTGTTGAACCCGCTGGGTGTTCCGTCGCGAAT
GAACGTCGGGCAGATTCTGGAAACCCATTTGGGTTGGGCCTGTGCCGGTA
TCGGGAAACTGATCGATGACGCGCTTGAAACCTATAAGGTCGACAATGAT
ATGGCCGCTCTTAGAGAGGCCGTTCAGCACGGTTATGGCGACGGCGAAGT
GTTGCCGCGCAAGAATGATGAGATCATCGAGCTTGCCGGAAATGTGACGC
GCGGTATTCCGATTGCGACTCCTGTCTTTGACGGTGCGCGCGAGCCGGAT
ATTGTGACCATGCTGGAACGGGCGGGTCTGCACAGCTCCGGTCAGATGGT
GCTAAACGATGGCCGTACGGGTGAGAAATTCACGCGTCCTGTGACGGTTG
GGTATAAATACCTGCTCAAGCTTCACCATTTGGTCGACGACAAAATCCAT
GCCCGCTCAATCGGGCCATACTCCCTCGTTACTCAGCAGCCGCTTGGTGG
TAAGGCGCAGTTTGGTGGCCAGCGCTTCGGCGAAATGGAAGTCTGGGCCC
TCGAAGCTTACGGCGCGGCTTACACGCTGCAGGAAATGCTCACAGTTAAG
TCTGATGACGTG
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