prot_P-canaliculata_contig10237.375.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-canaliculata_contig10237.375.1
Unique Nameprot_P-canaliculata_contig10237.375.1
Typepolypeptide
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length138
Homology
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BLAST of mRNA_P-canaliculata_contig10237.375.1 vs. uniprot
Match: D8LJE4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJE4_ECTSI)

HSP 1 Score: 51.2 bits (121), Expect = 8.720e-5
Identity = 28/85 (32.94%), Postives = 42/85 (49.41%), Query Frame = 0 
Query:   34 CGCDSVERVTIAITPISKHIMPVNRKSP-RDTNEKGQAVKACVFNNGSTVTNYNYLWRCVRDAACLITDNWHQMSIFRYPRPLTV 117
            C C +V++V+I ++ + KH +PV    P +  +      K C   NG  V NY     C++   C I D+  QM I R PR + V
Sbjct:  190 CPCSTVDKVSIMVSSLFKHDLPVPPSCPWQHVDNVTPENKGCTTVNGRRVGNYTDTVECLQQHPCRIVDDRIQMLILRDPRAVAV 274
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10237.375.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LJE4_ECTSI8.720e-532.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig10237contigP-canaliculata_contig10237:2396..3943 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig10237.375.1mRNA_P-canaliculata_contig10237.375.1Pelvetia canaliculata dioeciousmRNAP-canaliculata_contig10237 2020..4370 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-canaliculata_contig10237.375.1 ID=prot_P-canaliculata_contig10237.375.1|Name=mRNA_P-canaliculata_contig10237.375.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=138bp
MKVLSDEAGANGGREIRNSALNFEPALRSGEARCGCDSVERVTIAITPIS
KHIMPVNRKSPRDTNEKGQAVKACVFNNGSTVTNYNYLWRCVRDAACLIT
DNWHQMSIFRYPRPLTVRHILPPLFSRQQAATKCVFR*
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