mRNA_P-canaliculata_contig10237.375.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig10237.375.1
Unique NamemRNA_P-canaliculata_contig10237.375.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig10237.375.1 vs. uniprot
Match: D8LJE4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJE4_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 9.440e-17
Identity = 62/201 (30.85%), Postives = 91/201 (45.27%), Query Frame = 1 
Query:    1 CPPCDILFSRLEPSSQGGKLIQDVKIQLRGEPKSGTRLAFALAEGTLVHTCRYLQWAFGESSCVM-----------KVLSDEAGANGGREIRNSALNFEPALRSGEAR--------CGCDSVERVTIAITPISKHIMPVNRKSP-RDTNEKGQAVKACVFNNGSTVTNYNYLWRCVRDAACLITDNWHQMSIFRYPRPLTV 543
            CPPC+ +F +L  + Q       V++QLRGEPKSGT   F  A   L+ TC  L   +GE +C             K +S E      +E+      F+P  + G +         C C +V++V+I ++ + KH +PV    P +  +      K C   NG  V NY     C++   C I D+  QM I R PR + V
Sbjct:   83 CPPCETMFGKLNGAQQ------HVELQLRGEPKSGTSFMFEWAVNALMVTCEELGRLYGEGTCTFRWRGFFSRRKQKPVSPETALVDMKEV---FFVFKPNRQHGRSSAGGPSASPCPCSTVDKVSIMVSSLFKHDLPVPPSCPWQHVDNVTPENKGCTTVNGRRVGNYTDTVECLQQHPCRIVDDRIQMLILRDPRAVAV 274
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10237.375.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LJE4_ECTSI9.440e-1730.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig10237contigP-canaliculata_contig10237:2020..4370 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size982
Cds size414
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig10237.375.1prot_P-canaliculata_contig10237.375.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig10237 2396..3943 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815597.4769585-UTR-P-canaliculata_contig10237:2019..23951622815597.4769585-UTR-P-canaliculata_contig10237:2019..2395Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10237 2020..2395 -
1693494157.6599102-UTR-P-canaliculata_contig10237:2019..23951693494157.6599102-UTR-P-canaliculata_contig10237:2019..2395Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10237 2020..2395 -
1622815597.5334437-UTR-P-canaliculata_contig10237:3943..39601622815597.5334437-UTR-P-canaliculata_contig10237:3943..3960Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10237 3944..3960 -
1693494157.6996052-UTR-P-canaliculata_contig10237:3943..39601693494157.6996052-UTR-P-canaliculata_contig10237:3943..3960Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10237 3944..3960 -
1622815597.5464795-UTR-P-canaliculata_contig10237:4195..43701622815597.5464795-UTR-P-canaliculata_contig10237:4195..4370Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10237 4196..4370 -
1693494157.7095506-UTR-P-canaliculata_contig10237:4195..43701693494157.7095506-UTR-P-canaliculata_contig10237:4195..4370Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10237 4196..4370 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815597.491149-CDS-P-canaliculata_contig10237:2395..26331622815597.491149-CDS-P-canaliculata_contig10237:2395..2633Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10237 2396..2633 -
1693494157.6684-CDS-P-canaliculata_contig10237:2395..26331693494157.6684-CDS-P-canaliculata_contig10237:2395..2633Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10237 2396..2633 -
1622815597.5072865-CDS-P-canaliculata_contig10237:2669..27231622815597.5072865-CDS-P-canaliculata_contig10237:2669..2723Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10237 2670..2723 -
1693494157.6776745-CDS-P-canaliculata_contig10237:2669..27231693494157.6776745-CDS-P-canaliculata_contig10237:2669..2723Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10237 2670..2723 -
1622815597.5203238-CDS-P-canaliculata_contig10237:3821..39431622815597.5203238-CDS-P-canaliculata_contig10237:3821..3943Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10237 3822..3943 -
1693494157.6871433-CDS-P-canaliculata_contig10237:3821..39431693494157.6871433-CDS-P-canaliculata_contig10237:3821..3943Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10237 3822..3943 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig10237.375.1

>prot_P-canaliculata_contig10237.375.1 ID=prot_P-canaliculata_contig10237.375.1|Name=mRNA_P-canaliculata_contig10237.375.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=138bp
MKVLSDEAGANGGREIRNSALNFEPALRSGEARCGCDSVERVTIAITPIS
KHIMPVNRKSPRDTNEKGQAVKACVFNNGSTVTNYNYLWRCVRDAACLIT
DNWHQMSIFRYPRPLTVRHILPPLFSRQQAATKCVFR*
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mRNA from alignment at P-canaliculata_contig10237:2020..4370-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig10237.375.1 ID=mRNA_P-canaliculata_contig10237.375.1|Name=mRNA_P-canaliculata_contig10237.375.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=2351bp|location=Sequence derived from alignment at P-canaliculata_contig10237:2020..4370- (Pelvetia canaliculata dioecious)
TGTCCACCGTGCGATATACTTTTTTCAAGGCTCGAGCCAAGCTCGCAAGG
GGGAAAGCTGATCCAAGATGTGAAAATTCAACTACGAGGAGAACCGAAGA
GCGGCACAAGATTAGCATTTGCGTTGGCAGAAGGGACACTGGTACATACC
TGCCGTTACCTGCAGTGGGCTTTCGGTGCATAACGGTCGTGACAAGGAGA
TGTCACCTAATCTATCAGTGTTGCTACTGACGTCACTTGCAGCAGATGGT
CATCTCAGTGAGATCGGTGCAGCGCTTTATCAGCTACCATGGTGATCGCG
TTGCATCATTAACAACTACTGTTTCAAAATACAGGTACTCAACTATAATA
TTGGCACGTCATCTCGCAGAAATCTTGCAGAATTCGACGTAACTTACCCC
TTCCCTGCAGGTGAGAGTAGCTGTGTAATGAAAGTCCTGTCCGACGAAGC
TGGGGCCAACGGTGGGCGTGAAATCAGGAACAGCGCGCTTAATTTTGAAC
CCGCGTTGAGGAGTGGCGAGGCGCGATGCGGCTGCGACTCTGTAGAACGG
TGAGGCATGCTCATAATATGAACATATGTGGTAGGCACAGTCACCTCAGG
CTCGAAACACGGGCTCATCCAGTATGGAAAAATTGACGACCAAGTCGAAG
GGCCGCGAATAAAAGTCTTCTCGTCATTCTGCATAGAATACGATCTCCTG
AGAAAGCAGTCTGTATATCAAAAGCAGGTTCAACTATTTTTGGTCCAAAA
CGGCGTTTTCCCTAGGATGAAGATCTGATCTGAAACGTTTAGAGAGGTTT
CTTACCACTGCTCTACCGCGGTATAACTATTTCAAGTCAAATATTTTCGT
CTTGTTTGAAGCTCGCATTCACCCAAACAAGACTAAGAAAAGCGGTTTCG
GGGCCCTTCTTCTTCAGGATACACCCCAAAACAACCCATGTCGTGCTTTA
CTTATGCCCTCAAGCCAAACATAGAAAGTACAAAACCTTGGAATAGTTAC
GACGTCATCGACATGTGTTGGAGAAACCGAGTGAAGGTGTTAGATAAATA
AAATCTGAAAGGGAGGGTGCTGTTTTGGAGTTGAGCCTTGTTTTGATATA
TAGCCTGCTTTCTCAAGAGACCGTATTATAGGTAAAGACGGGTGCATGTA
GAAAGAGTACCACGAACAGTCTGTAGTATGCCAAGGCATGCTCCGAGACA
CACGATAACATAATGCTAGTGTGTTAGGCCTTTCAAGTACACTAGAACCA
CAAAGGTTTGCGGCTTAAGACGTGTTAATGTTTAAGGGCGAAGGTGCCCA
TGATAACAAATAGGCGCTTGTTTAGACGATCTTGCAACTTCTGCCGAATC
TGGCGCTTAAGGATGGCCAGGCTCAGCGCAGTCTCCTCAAAACGCTGGGT
TTCTTTCGTCCCCTCAGTTGAGGGAACGTGCAGCCTTATAGAATGAAAAT
TAGCAAGCTTGTTTCCTTTTGAGGCGTGGGCCCTAGCGATGCAAGTTCCT
GAAATGCGAATGACTTTGATTGATTTGGTGCCAGCGTGATAGGTCATTGC
TTTGAATGTTTTATCCATTTTGCCTCGGCCTAGCGATAACTTTGTGAAAA
ATCCTTTGCTCCTCCCTTCTCCAAACGTGTTTACCGTGCGCTACTAGGGT
CACTATCGCCATCACCCCAATCTCGAAGCACATCATGCCGGTGAATCGCA
AGTGCACTTAACGCCACTCAGGTGGCATTGACGAGAGATCCCCCCGCGAC
ACGAACGAGAAGGGACAAGCAGTTAAGGCGTGTGTGTTCAATAATGGTTC
GACTGTAACGAACTACAACTATCTGTGGCGATGTGTTCGAGACGCGGCCT
GTCTCATCACCGACAATTGGCACCAAATGAGTATTTTTCGGTACCCAAGG
CCACTTACTGTAAGGCACATACTACCACCTCTCTTCAGTCGGCAACAGGC
CGCCACTAAATGTGTATTTAGATGAATTCGTTATCGTGGAACTACCGTTG
ATGACTCAATGGGTCGCGGTTCGGCACATATTGTTCGAAGAAATGATGCA
GGGCCGGTCGACGTCATTCTGGTACGAGGATGCGACAGAGAACCCCACGC
AATGGCACTACCGCTGGCTCCAAACGGTTGGTCTGCAGCTCCCGCAAAGT
TTAGTTCAGTTCATGGTCAATGCTGCGGCCGCTGGCGACTTTGGCGGAAG
GAAACGTCCTATGGACAATCATCCAGGGGAACAAACTCGTGAAGAACGAG
TGAGAAAATTTGAGGAGGAGATCAGCCCGCAGGTGTTGGCAACCACAGAC
GACGTTTTGAGCCAGTGGCTACCATACGTGCTTTTGGCTCGACTCAACGT
A
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Coding sequence (CDS) from alignment at P-canaliculata_contig10237:2020..4370-

>mRNA_P-canaliculata_contig10237.375.1 ID=mRNA_P-canaliculata_contig10237.375.1|Name=mRNA_P-canaliculata_contig10237.375.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=828bp|location=Sequence derived from alignment at P-canaliculata_contig10237:2020..4370- (Pelvetia canaliculata dioecious)
ATGAAAGTCCTGTCCGACGAAGCTGGGGCCAACGGTGGGCGTGAAATCAG
GAACAGCGCGCTTAATTTTGAACCCGCGTTGAGGAGTGGCGAGGCGCGAT
GCGGCTGCGACTCTGTAGAACGATGAAAGTCCTGTCCGACGAAGCTGGGG
CCAACGGTGGGCGTGAAATCAGGAACAGCGCGCTTAATTTTGAACCCGCG
TTGAGGAGTGGCGAGGCGCGATGCGGCTGCGACTCTGTAGAACGGGTCAC
TATCGCCATCACCCCAATCTCGAAGCACATCATGCCGGTGAATCGCAAGG
TCACTATCGCCATCACCCCAATCTCGAAGCACATCATGCCGGTGAATCGC
AAATCCCCCCGCGACACGAACGAGAAGGGACAAGCAGTTAAGGCGTGTGT
GTTCAATAATGGTTCGACTGTAACGAACTACAACTATCTGTGGCGATGTG
TTCGAGACGCGGCCTGTCTCATCACCGACAATTGGCACCAAATGAGTATT
TTTCGGTACCCAAGGCCACTTACTGTAAGGCACATACTACCACCTCTCTT
CAGTCGGCAACAGGCCGCCACTAAATGTGTATTTAGATGAATCCCCCCGC
GACACGAACGAGAAGGGACAAGCAGTTAAGGCGTGTGTGTTCAATAATGG
TTCGACTGTAACGAACTACAACTATCTGTGGCGATGTGTTCGAGACGCGG
CCTGTCTCATCACCGACAATTGGCACCAAATGAGTATTTTTCGGTACCCA
AGGCCACTTACTGTAAGGCACATACTACCACCTCTCTTCAGTCGGCAACA
GGCCGCCACTAAATGTGTATTTAGATGA
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