prot_P-canaliculata_contig10234.371.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-canaliculata_contig10234.371.1
Unique Nameprot_P-canaliculata_contig10234.371.1
Typepolypeptide
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length691
Homology
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BLAST of mRNA_P-canaliculata_contig10234.371.1 vs. uniprot
Match: D7G0F8_ECTSI (SMAP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0F8_ECTSI)

HSP 1 Score: 115 bits (289), Expect = 2.150e-23
Identity = 99/195 (50.77%), Postives = 107/195 (54.87%), Query Frame = 0 
Query:  500 RPRWDKAAPCAIAKEALAAIERKAFVQKPMGQQQQQKRNNSLWGADKSVGV--KRPLWGGGARASEGSAASGTGNVSTSAAGFVGGTRGGSSGDDGANVTEQRWQEAAAALGPAERQAKFLRLLGAKKGATAVTAAAGPTNGNPGSSXXXXXXXVDRS---SSSSRAANAKVMQDLEVHYQKAQRAHFGFQRGLG 689
            RPRWDKAAP A A   L+A   KA  +   G      +   +W          KRPLWG    A   +A  G GN S  + G          GD  AN  EQRWQEAAAALGPAERQ KFLRLLGAKKGA A               XXXXXXX       +   RAANAKVMQDLE+HYQKA RAHFGFQRGLG
Sbjct:  385 RPRWDKAAPTATA--GLSAAVAKASGRAVAG------KKKLVWXXXXXXXXXXKRPLWGVTTEAGV-AAPMGGGNGSGLSPGQA------QEGDQQANGVEQRWQEAAAALGPAERQVKFLRLLGAKKGAAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXADDGRAANAKVMQDLEIHYQKAHRAHFGFQRGLG 564
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10234.371.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G0F8_ECTSI2.150e-2350.77SMAP domain-containing protein n=1 Tax=Ectocarpus ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR028124Small acidic protein-like domainPFAMPF15477SMAPcoord: 601..689
e-value: 2.5E-10
score: 41.2

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig10234contigP-canaliculata_contig10234:2475..10154 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig10234.371.1mRNA_P-canaliculata_contig10234.371.1Pelvetia canaliculata dioeciousmRNAP-canaliculata_contig10234 1960..11376 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-canaliculata_contig10234.371.1 ID=prot_P-canaliculata_contig10234.371.1|Name=mRNA_P-canaliculata_contig10234.371.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=691bp
MNYGRFNNSKSSNEFGRPVERRDEGARRDRRDPAEHSFHRGPPSPAEGQN
FYHQRVRSHAGNSRGVSPVENGRRGPGRYAPGPDRNNGEDDRNRGFDAPG
GTIDKGRGLREQVDAYAGGNSGAGWDEGRDRKPNTGRRDGDRDDGGPSGS
LPDAGARRGDFRPDDFRGKRELERGGNGRGRPSRSSRDFDREDERSEGRT
GDRGADPGGVHREPRRDDSRARDQRDHGAYVVGRNRALEDGRGRREGGGG
TTVGRTRDFGGESSVGDERQRERRRDDSRGRRGGENSDDRKRGRRDVGGS
YRSDGSRDHTRDSREQHRHERGYGYGYGGVRDDPGDPSRDRPGDVRRRFP
ERPRPSPGSAGRDFGDRRPGGSRDDRPRGPNRDSFDRRDHRDSRDPPRHP
AGARRNIDRRERRGTNETSPRPSGSRLSESGPPVGFVDGQWVGGGERRGG
RGRGGADVAQKSGYGQHRDGQRTSPETPSAPGTSVANAAGLPASNSGSGR
PRWDKAAPCAIAKEALAAIERKAFVQKPMGQQQQQKRNNSLWGADKSVGV
KRPLWGGGARASEGSAASGTGNVSTSAAGFVGGTRGGSSGDDGANVTEQR
WQEAAAALGPAERQAKFLRLLGAKKGATAVTAAAGPTNGNPGSSGAEGES
GVDRSSSSSRAANAKVMQDLEVHYQKAQRAHFGFQRGLGT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR028124SMAP_dom