prot_P-canaliculata_contig10231.368.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-canaliculata_contig10231.368.1
Unique Nameprot_P-canaliculata_contig10231.368.1
Typepolypeptide
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length87
Homology
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BLAST of mRNA_P-canaliculata_contig10231.368.1 vs. uniprot
Match: D7G5E1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5E1_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 1.710e-14
Identity = 40/72 (55.56%), Postives = 48/72 (66.67%), Query Frame = 0 
Query:    1 RFSNFTFLASICAAADNGCNEAWGHVVRAQPARRCLTRAYLAYKCRLLEAFLRQAMFAMPTPALLIQFVTRN 72
            RFS F  +A+ C   D     AW  VVRA+P  RCL   YLA+KC LLE FL+Q +FAMPTPALLI FV++ 
Sbjct:  329 RFSKFKTIAA-CTQGDPDAAAAWRRVVRAKPHYRCLNPDYLAHKCNLLETFLQQVLFAMPTPALLIHFVSQK 399
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BLAST of mRNA_P-canaliculata_contig10231.368.1 vs. uniprot
Match: D7FHG1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHG1_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 1.440e-7
Identity = 31/70 (44.29%), Postives = 41/70 (58.57%), Query Frame = 0 
Query:    1 RFSNFTFLASICAAAD-NGCNEAWGHVVRAQPARRCLTRAYLAYKCRLLEAFLRQAMFAMPTPALLIQFV 69
            R+S+F  LA     +D     +AW H+ + Q   RCL   YL  KC LLE FL Q +F +PTP+LL+ FV
Sbjct:  234 RYSDFKLLAEYAKISDLRDTVKAWAHIQQTQRWFRCLEANYLKTKCSLLERFLAQFLFEVPTPSLLMNFV 303
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10231.368.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G5E1_ECTSI1.710e-1455.56Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FHG1_ECTSI1.440e-744.29Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..24
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 25..86
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 16..24
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..4
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 5..15

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig10231contigP-canaliculata_contig10231:272..3325 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig10231.368.1mRNA_P-canaliculata_contig10231.368.1Pelvetia canaliculata dioeciousmRNAP-canaliculata_contig10231 272..3991 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-canaliculata_contig10231.368.1 ID=prot_P-canaliculata_contig10231.368.1|Name=mRNA_P-canaliculata_contig10231.368.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=87bp
RFSNFTFLASICAAADNGCNEAWGHVVRAQPARRCLTRAYLAYKCRLLEA
FLRQAMFAMPTPALLIQFVTRNYSYGSLVWNRVLPC*
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