prot_P-canaliculata_contig10227.360.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_P-canaliculata_contig10227.360.1
Unique Name	prot_P-canaliculata_contig10227.360.1
Type	polypeptide
Organism	Pelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length	417

Homology

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BLAST of mRNA_P-canaliculata_contig10227.360.1 vs. uniprot
Match: D7G5D5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5D5_ECTSI)

HSP 1 Score: 128 bits (322), Expect = 1.590e-30
Identity = 60/126 (47.62%), Postives = 80/126 (63.49%), Query Frame = 0

Query:  290 CRNGFTGFEANDACCSASCGTCGGTGCSSLSGGPDDCCTRAILASGVMCDDSGAPPCILSDVEEVVTCSNELPGVQSGDVCCSAECGTCGGTGCSGRPGGGDECCVGIISSSGVLCSESGASPCIV 415
            C  G  G + +D CCS+SCG+CGGTGC+S  GG + CC   + ASG  C  +G  PC+ +   EV  C   + G+Q  DVCCS  CG+CGGTGC+ R GG + CC G + +SG  CS +G +PC+V
Sbjct:  145 CDGGIVGIQQSDICCSSSCGSCGGTGCTSRDGGSEACCGGGVRASGRYCSVTGEAPCMTN---EVPMCDGGIVGIQQSDVCCSLSCGSCGGTGCTSRDGGSEACCGGGVRASGRDCSVTGEAPCVV 267

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BLAST of mRNA_P-canaliculata_contig10227.360.1 vs. uniprot
Match: A0A6H5JWJ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWJ0_9PHAE)

HSP 1 Score: 132 bits (333), Expect = 2.290e-30
Identity = 66/145 (45.52%), Postives = 82/145 (56.55%), Query Frame = 0

Query:  285 VPANTCRNGFTGFEANDACCSASCGTCGGTGCSSLSGGPDDCCTRAILASGVMCDDSGAPPCILSDVE--------------EVVTCSNELPGVQSGDVCCSAECGTCGGTGCSGRPGGGDECCVGIISSSGVLCSESGASPCIV 415
            V A  C  G  G + +D CCSASCG+C G+GCS   GGPD CC   + ASG  C  +G  PCI                   EV  C   + G+Q+ DVCCS  CG+CGG+GCSGR GG D CC G + +SG  CS +G +PC+V
Sbjct:  392 VEAPMCDGGIIGIQTSDVCCSASCGSCXGSGCSGRDGGPDACCGGGVRASGRFCSVTGEAPCITGPAPTPXXXXXXXXXXTIEVPECDGGIVGIQASDVCCSLSCGSCGGSGCSGRDGGSDACCGGGVRASGRFCSVTGEAPCLV 536

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BLAST of mRNA_P-canaliculata_contig10227.360.1 vs. uniprot
Match: A0A6H5K3Y1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3Y1_9PHAE)

HSP 1 Score: 130 bits (327), Expect = 2.610e-30
Identity = 63/139 (45.32%), Postives = 80/139 (57.55%), Query Frame = 0

Query:  290 CRNGFTGFEANDACCSASCGTCGGTGCSSLSGGPDDCCTRAILASGVMCDDSGAPPCILSDVE--------------EVVTCSNELPGVQSGDVCCSAECGTCGGTGCSGRPGGGDECCVGIISSSGVLCSESGASPCI 414
            C  G  G +A+D CCS SCG+CGG+GCS   GG D CC   + ASG  C  +   PC+                   EV  C  E+ G+Q+ DVCCSA CG+CGG+GCSGR GG D CC G + +SG  CS +G +PC+
Sbjct:  180 CEGGIAGIQASDVCCSVSCGSCGGSGCSGRDGGSDACCGGGVRASGRFCSITEEAPCMTGPAPTPXXXXXXXXXXTVEVPMCDGEIVGIQASDVCCSASCGSCGGSGCSGRDGGSDACCGGGVRASGRFCSVTGEAPCM 318

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BLAST of mRNA_P-canaliculata_contig10227.360.1 vs. uniprot
Match: D7G4E0_ECTSI (N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4E0_ECTSI)

HSP 1 Score: 130 bits (328), Expect = 3.790e-29
Identity = 63/154 (40.91%), Postives = 88/154 (57.14%), Query Frame = 0

Query:  275 TLVGDVSCEEVPANTCRNGFTGFEANDACCSASCGTCGGTGCSSLSGGPDDCCTRAILASGVMCDDSGAPPCILSDVE--------------EVVTCSNELPGVQSGDVCCSAECGTCGGTGCSGRPGGGDECCVGIISSSGVLCSESGASPCI 414
            T+   V   +   + C  G  G +++D CCSASCG+CGG+GCSS  GG + CC   + ASG  C  +G  PC+ S                 E+  C   + G+Q+ DVCCSA CG+CGG+GC+GR GG + CC G + +SG  CS +G +PC+
Sbjct:   62 TINSSVRSLQAEVSMCDGGIVGIQSSDVCCSASCGSCGGSGCSSRDGGSESCCGGGVRASGRYCSVTGEAPCMTSPAPTXXXXXXXXXXXXXEIPMCDGGIVGIQTSDVCCSASCGSCGGSGCTGRDGGSESCCGGGVRASGRYCSITGEAPCM 215

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BLAST of mRNA_P-canaliculata_contig10227.360.1 vs. uniprot
Match: A0A6H5JTV1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTV1_9PHAE)

HSP 1 Score: 128 bits (321), Expect = 2.210e-28
Identity = 63/156 (40.38%), Postives = 84/156 (53.85%), Query Frame = 0

Query:  273 PDTLVGDVSCEEVPANTCRNGFTGFEANDACCSASCGTCGGTGCSSLSGGPDDCCTRAILASGVMCDDSGAPPCILSDVE--------------EVVTCSNELPGVQSGDVCCSAECGTCGGTGCSGRPGGGDECCVGIISSSGVLCSESGASPCI 414
            PD          V    C     G +++D CCSASCG+CGG+GC+   GG + CC   + ASG  C  +G  PC+                   EV  C  ++ G+QS DVCCSA CGTCGG+GC+GR GG + CC G + +SG  CS +G +PC+
Sbjct:  128 PDXXXXXXXXXTVEVPMCDGDIVGIQSSDVCCSASCGSCGGSGCTERDGGSESCCGGGVRASGRYCSITGEAPCMTGPAPTPDXXXXXXXXXTVEVPMCDGDIVGIQSSDVCCSASCGTCGGSGCTGRDGGSESCCGGGVRASGRYCSITGEAPCM 283

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BLAST of mRNA_P-canaliculata_contig10227.360.1 vs. uniprot
Match: D7G3U7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3U7_ECTSI)

HSP 1 Score: 127 bits (320), Expect = 2.220e-28
Identity = 65/132 (49.24%), Postives = 80/132 (60.61%), Query Frame = 0

Query:  284 EVPANTCRNGFTGFEANDACCSASCGTCGGTGCSSLSGGPDDCCTRAILASGVMCDDSGAPPCILSDVEEVVTCSNELPGVQSGDVCCSAECGTCGGTGCSGRPGGGDECCVGIISSSGVLCSESGASPCIV 415
            EVP   C  G  G + +D CCS SCG+CGGTGCS   GG   CC   + ASG  C  +G  PC+      V  C   + G+Q+ DVCCS  C +CGG+GCSGR GG DECC G + +SG  CS +G +PCIV
Sbjct:  266 EVPM--CDGGIVGIQTSDVCCSTSCGSCGGTGCSGRDGGSGACCGGGVRASGRYCSVTGEAPCMT-----VPKCDGGIVGIQASDVCCSLSCESCGGSGCSGRDGGEDECCGGGVRASGRDCSVTGEAPCIV 390

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BLAST of mRNA_P-canaliculata_contig10227.360.1 vs. uniprot
Match: A0A6H5JVC9_9PHAE (AMOP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVC9_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 7.670e-28
Identity = 64/147 (43.54%), Postives = 84/147 (57.14%), Query Frame = 0

Query:  284 EVPANTCRNGFTGFEANDACCSASCGTCGGTGCSSLSGGPDDCCTRAILASGVMCDDSGAPPCILS----------------DVEEVVTCSNELPGVQSGDVCCSAECGTCGGTGCSGRPGGGDECCVGIISSSGVLCSESGASPCI 414
            EVP  TC  G  G +++D CCS SCG+CGGTGC+   GG D CC   + +SG  C  +G  PCI                  D   V  C   + G+QS DVCC++ CG+CGG+GC+GR GG D CC G + +SG  CS +G +PC+
Sbjct:   49 EVP--TCDGGIVGIQSSDVCCSLSCGSCGGTGCTGRDGGADACCGGGVRSSGRFCSVTGEAPCITGPAPTPEPTXXXXXXXXDEGAVPMCDGGIVGIQSSDVCCTSSCGSCGGSGCTGRDGGEDACCGGGVRASGRYCSVTGEAPCM 193

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BLAST of mRNA_P-canaliculata_contig10227.360.1 vs. uniprot
Match: D7G3T6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3T6_ECTSI)

HSP 1 Score: 125 bits (315), Expect = 7.760e-28
Identity = 61/148 (41.22%), Postives = 85/148 (57.43%), Query Frame = 0

Query:  283 EEVPANTCRNGFTGFEANDACCSASCGTCGGTGCSSLSGGPDDCCTRAILASGVMCDDSGAPPCILSDV--------------EEVVTCSNELPGVQSGDVCCSAECGTCGGTGCSGRPGGGDECCVGIISSSGVLCSESGASPCIVD 416
            +EVP   C  G  G + +D CCS+SCG+CGGTGC+S  GG + CC   + ASG  C  +G  PC+                  +EV  C   + G+Q  D+CCS+ CG+CGGTGC+ R GG + CC G + +SG  CS +G +PC+ +
Sbjct:   20 DEVPM--CDGGIVGIQQSDICCSSSCGSCGGTGCTSRDGGSEACCGGGVRASGRFCSVTGEAPCMTGPAPTPXXXXXXXXXXTDEVPMCDGGIVGIQQSDICCSSRCGSCGGTGCTSRDGGSEACCGGGVRASGRYCSVTGEAPCMTN 165

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BLAST of mRNA_P-canaliculata_contig10227.360.1 vs. uniprot
Match: D7FJ68_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ68_ECTSI)

HSP 1 Score: 122 bits (307), Expect = 2.580e-26
Identity = 63/133 (47.37%), Postives = 80/133 (60.15%), Query Frame = 0

Query:  288 NTCRNGFTGFEANDACCSASCGTCGGTGCSSLSGG--PDDCCTRAILASGVMCDDSGAPPCILSDVEEVVTCSNELPGVQSGDVCCSAECGTCGGTGCSGRPGG--GDECCVGIISSSGVLCSESGASPCIVD 416
            + C NG  G +  +ACC A CG CGGTGC+ L GG   D+CC   I   G +C  +   PC++ DV     CSN +PG+Q+G+ CC AECG CGGTGC+   GG   D CC+  I   G LCS +  +PCIVD
Sbjct: 2818 DVCSNGIPGIQTGNACCLAECGGCGGTGCAQLGGGLGADNCCMSEIEDFGELCSVTMEAPCVVDDV-----CSNGIPGIQTGNACCLAECGGCGGTGCAQLGGGLGADNCCMSEIEDFGELCSATMTAPCIVD 2945

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BLAST of mRNA_P-canaliculata_contig10227.360.1 vs. uniprot
Match: A0A6H5JG29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG29_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 1.450e-25
Identity = 63/135 (46.67%), Postives = 83/135 (61.48%), Query Frame = 0

Query:  287 ANTCRNGFTGFEANDACCSASCGTCGGTGCSSLSGG--PDDCCTRAILASGVMCDDSGAPPCILSDVEEVVTCSNELPGVQSGDVCCSAECGTCGGTGCSGRPGGG---DECCVGIISSSGVLCSESGASPCIVD 416
            ++ C NG  G ++ +ACC A CG CGG+GC+ L GG   D+CC   I   G +C    A PC++ D+     CSN +PG+QSG+ CC AECG CGG+GC+ + GGG   D CC   I   G LCS   A+PC+VD
Sbjct: 1573 SDMCSNGIPGIQSGNACCLAECGGCGGSGCAQLGGGLGEDNCCQSEIEDFGELCSVKMAAPCVVDDM-----CSNGIPGIQSGNACCLAECGGCGGSGCA-QLGGGLGEDNCCQSEIEDFGELCSVKMAAPCVVD 1701

The following BLAST results are available for this feature:

BLAST of mRNA_P-canaliculata_contig10227.360.1 vs. uniprot

BLAST of mRNA_P-canaliculata_contig10227.360.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7G5D5_ECTSI	1.590e-30	47.62	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5JWJ0_9PHAE	2.290e-30	45.52	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K3Y1_9PHAE	2.610e-30	45.32	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7G4E0_ECTSI	3.790e-29	40.91	N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepI...	[more]
A0A6H5JTV1_9PHAE	2.210e-28	40.38	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
D7G3U7_ECTSI	2.220e-28	49.24	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5JVC9_9PHAE	7.670e-28	43.54	AMOP domain-containing protein n=1 Tax=Ectocarpus ...	[more]
D7G3T6_ECTSI	7.760e-28	41.22	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
D7FJ68_ECTSI	2.580e-26	47.37	WSC domain-containing protein n=1 Tax=Ectocarpus s...	[more]
A0A6H5JG29_9PHAE	1.450e-25	46.67	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SMART	SM00364	LRR_bac_2	coord: 197..216 e-value: 580.0 score: 0.2 coord: 75..94 e-value: 470.0 score: 1.0 coord: 172..191 e-value: 220.0 score: 3.5 coord: 221..240 e-value: 160.0 score: 4.6 coord: 124..143 e-value: 200.0 score: 3.8 coord: 101..119 e-value: 86.0 score: 6.6 coord: 148..167 e-value: 41.0 score: 9.0
None	No IPR available	PANTHER	PTHR24366:SF102	LEUCINE RICH REPEAT CONTAINING 15	coord: 131..264 coord: 38..186
None	No IPR available	PANTHER	PTHR24366	FAMILY NOT NAMED	coord: 131..264 coord: 38..186
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 18..22
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 23..416
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 9..17
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..22
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..8
None	No IPR available	SIGNALP_EUK	SignalP-noTM	SignalP-noTM	coord: 1..22 score: 0.798
None	No IPR available	SUPERFAMILY	52058	L domain-like	coord: 78..265
IPR003591	Leucine-rich repeat, typical subtype	SMART	SM00369	LRR_typ_2	coord: 222..244 e-value: 22.0 score: 10.4 coord: 172..195 e-value: 1.9E-4 score: 30.8 coord: 201..220 e-value: 7.0 score: 14.5 coord: 100..123 e-value: 19.0 score: 11.0 coord: 124..147 e-value: 3.6E-6 score: 36.5 coord: 75..98 e-value: 40.0 score: 8.3 coord: 148..171 e-value: 3.9E-4 score: 29.7 coord: 245..269 e-value: 320.0 score: 0.9
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	3.80.10.10		coord: 26..199 e-value: 6.0E-33 score: 115.5
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	3.80.10.10		coord: 200..305 e-value: 2.1E-13 score: 52.0
IPR001611	Leucine-rich repeat	PFAM	PF13855	LRR_8	coord: 201..257 e-value: 5.2E-11 score: 42.1 coord: 101..161 e-value: 1.1E-14 score: 53.9
IPR001611	Leucine-rich repeat	PROSITE	PS51450	LRR	coord: 247..269 score: 4.593
IPR001611	Leucine-rich repeat	PROSITE	PS51450	LRR	coord: 77..98 score: 4.855
IPR001611	Leucine-rich repeat	PROSITE	PS51450	LRR	coord: 150..171 score: 5.54
IPR001611	Leucine-rich repeat	PROSITE	PS51450	LRR	coord: 126..147 score: 7.935
IPR001611	Leucine-rich repeat	PROSITE	PS51450	LRR	coord: 199..220 score: 5.902
IPR001611	Leucine-rich repeat	PROSITE	PS51450	LRR	coord: 174..195 score: 7.173
IPR001611	Leucine-rich repeat	PROSITE	PS51450	LRR	coord: 223..244 score: 7.558
IPR001611	Leucine-rich repeat	PROSITE	PS51450	LRR	coord: 102..123 score: 5.425

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-canaliculata_contig10227	contig	P-canaliculata_contig10227:4116..9597 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Pelvetia canaliculata dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_P-canaliculata_contig10227.360.1	mRNA_P-canaliculata_contig10227.360.1	Pelvetia canaliculata dioecious	mRNA	P-canaliculata_contig10227 2704..9645 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_P-canaliculata_contig10227.360.1 ID=prot_P-canaliculata_contig10227.360.1|Name=mRNA_P-canaliculata_contig10227.360.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=417bp
MMTSIFQMVLLPMVLLVDVTYGLNSCFDPASSDFRDCNAGAFSTTSFPGE
LRLNNCGLVDDDIPDLIACFDDFGRELITSINLGGNAIEELPTNLFDGSW
PELEGLSIDENSLSTLPAGLFSELTNLEVLDLANNMIVELPEGAFEGLTA
LESLGLDFNLLTELPVGVFDGLGRLEVLDLDNNRLTELRADVFDSFGGRF
TILSLSENELTELPPGLFSGSSGLNSLNLDGNDLTTLPLDIFLPLTQISR
LDLSGNDNLQCVPQNSASSVLLPDTLVGDVSCEEVPANTCRNGFTGFEAN
DACCSASCGTCGGTGCSSLSGGPDDCCTRAILASGVMCDDSGAPPCILSD
VEEVVTCSNELPGVQSGDVCCSAECGTCGGTGCSGRPGGGDECCVGIISS
SGVLCSESGASPCIVD*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR003591	Leu-rich_rpt_typical-subtyp
IPR032675	LRR_dom_sf
IPR001611	Leu-rich_rpt