mRNA_P-canaliculata_contig10227.360.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig10227.360.1
Unique NamemRNA_P-canaliculata_contig10227.360.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig10227.360.1 vs. uniprot
Match: D7G5D5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5D5_ECTSI)

HSP 1 Score: 127 bits (320), Expect = 6.970e-29
Identity = 60/126 (47.62%), Postives = 80/126 (63.49%), Query Frame = 1 
Query:  916 CRNGFTGFEANDACCSASCGTCGGTGCSSLSGGPDDCCTRAILASGVMCDDSGAPPCILSDVEEVVTCSNELPGVQSGDVCCSAECGTCGGTGCSGRPGGGDECCVGIISSSGVLCSESGASPCIV 1293
            C  G  G + +D CCS+SCG+CGGTGC+S  GG + CC   + ASG  C  +G  PC+ +   EV  C   + G+Q  DVCCS  CG+CGGTGC+ R GG + CC G + +SG  CS +G +PC+V
Sbjct:  145 CDGGIVGIQQSDICCSSSCGSCGGTGCTSRDGGSEACCGGGVRASGRYCSVTGEAPCMTN---EVPMCDGGIVGIQQSDVCCSLSCGSCGGTGCTSRDGGSEACCGGGVRASGRDCSVTGEAPCVV 267
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BLAST of mRNA_P-canaliculata_contig10227.360.1 vs. uniprot
Match: A0A6H5K3Y1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3Y1_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 1.410e-28
Identity = 63/139 (45.32%), Postives = 80/139 (57.55%), Query Frame = 1 
Query:  916 CRNGFTGFEANDACCSASCGTCGGTGCSSLSGGPDDCCTRAILASGVMCDDSGAPPCILSDVE--------------EVVTCSNELPGVQSGDVCCSAECGTCGGTGCSGRPGGGDECCVGIISSSGVLCSESGASPCI 1290
            C  G  G +A+D CCS SCG+CGG+GCS   GG D CC   + ASG  C  +   PC+                   EV  C  E+ G+Q+ DVCCSA CG+CGG+GCSGR GG D CC G + +SG  CS +G +PC+
Sbjct:  180 CEGGIAGIQASDVCCSVSCGSCGGSGCSGRDGGSDACCGGGVRASGRFCSITEEAPCMTGPAPTPXXXXXXXXXXTVEVPMCDGEIVGIQASDVCCSASCGSCGGSGCSGRDGGSDACCGGGVRASGRFCSVTGEAPCM 318
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BLAST of mRNA_P-canaliculata_contig10227.360.1 vs. uniprot
Match: A0A6H5JWJ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWJ0_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 1.660e-28
Identity = 66/145 (45.52%), Postives = 82/145 (56.55%), Query Frame = 1 
Query:  901 VPANTCRNGFTGFEANDACCSASCGTCGGTGCSSLSGGPDDCCTRAILASGVMCDDSGAPPCILSDVE--------------EVVTCSNELPGVQSGDVCCSAECGTCGGTGCSGRPGGGDECCVGIISSSGVLCSESGASPCIV 1293
            V A  C  G  G + +D CCSASCG+C G+GCS   GGPD CC   + ASG  C  +G  PCI                   EV  C   + G+Q+ DVCCS  CG+CGG+GCSGR GG D CC G + +SG  CS +G +PC+V
Sbjct:  392 VEAPMCDGGIIGIQTSDVCCSASCGSCXGSGCSGRDGGPDACCGGGVRASGRFCSVTGEAPCITGPAPTPXXXXXXXXXXTIEVPECDGGIVGIQASDVCCSLSCGSCGGSGCSGRDGGSDACCGGGVRASGRFCSVTGEAPCLV 536
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BLAST of mRNA_P-canaliculata_contig10227.360.1 vs. uniprot
Match: D7G4E0_ECTSI (N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4E0_ECTSI)

HSP 1 Score: 130 bits (326), Expect = 4.760e-27
Identity = 63/154 (40.91%), Postives = 88/154 (57.14%), Query Frame = 1 
Query:  871 TLVGDVSCEEVPANTCRNGFTGFEANDACCSASCGTCGGTGCSSLSGGPDDCCTRAILASGVMCDDSGAPPCILSDVE--------------EVVTCSNELPGVQSGDVCCSAECGTCGGTGCSGRPGGGDECCVGIISSSGVLCSESGASPCI 1290
            T+   V   +   + C  G  G +++D CCSASCG+CGG+GCSS  GG + CC   + ASG  C  +G  PC+ S                 E+  C   + G+Q+ DVCCSA CG+CGG+GC+GR GG + CC G + +SG  CS +G +PC+
Sbjct:   62 TINSSVRSLQAEVSMCDGGIVGIQSSDVCCSASCGSCGGSGCSSRDGGSESCCGGGVRASGRYCSVTGEAPCMTSPAPTXXXXXXXXXXXXXEIPMCDGGIVGIQTSDVCCSASCGSCGGSGCTGRDGGSESCCGGGVRASGRYCSITGEAPCM 215
[Close]
BLAST of mRNA_P-canaliculata_contig10227.360.1 vs. uniprot
Match: D7G3U7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3U7_ECTSI)

HSP 1 Score: 127 bits (318), Expect = 1.380e-26
Identity = 65/132 (49.24%), Postives = 80/132 (60.61%), Query Frame = 1 
Query:  898 EVPANTCRNGFTGFEANDACCSASCGTCGGTGCSSLSGGPDDCCTRAILASGVMCDDSGAPPCILSDVEEVVTCSNELPGVQSGDVCCSAECGTCGGTGCSGRPGGGDECCVGIISSSGVLCSESGASPCIV 1293
            EVP   C  G  G + +D CCS SCG+CGGTGCS   GG   CC   + ASG  C  +G  PC+      V  C   + G+Q+ DVCCS  C +CGG+GCSGR GG DECC G + +SG  CS +G +PCIV
Sbjct:  266 EVPM--CDGGIVGIQTSDVCCSTSCGSCGGTGCSGRDGGSGACCGGGVRASGRYCSVTGEAPCMT-----VPKCDGGIVGIQASDVCCSLSCESCGGSGCSGRDGGEDECCGGGVRASGRDCSVTGEAPCIV 390
[Close]
BLAST of mRNA_P-canaliculata_contig10227.360.1 vs. uniprot
Match: A0A6H5JTV1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTV1_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 1.620e-26
Identity = 63/156 (40.38%), Postives = 84/156 (53.85%), Query Frame = 1 
Query:  865 PDTLVGDVSCEEVPANTCRNGFTGFEANDACCSASCGTCGGTGCSSLSGGPDDCCTRAILASGVMCDDSGAPPCILSDVE--------------EVVTCSNELPGVQSGDVCCSAECGTCGGTGCSGRPGGGDECCVGIISSSGVLCSESGASPCI 1290
            PD          V    C     G +++D CCSASCG+CGG+GC+   GG + CC   + ASG  C  +G  PC+                   EV  C  ++ G+QS DVCCSA CGTCGG+GC+GR GG + CC G + +SG  CS +G +PC+
Sbjct:  128 PDXXXXXXXXXTVEVPMCDGDIVGIQSSDVCCSASCGSCGGSGCTERDGGSESCCGGGVRASGRYCSITGEAPCMTGPAPTPDXXXXXXXXXTVEVPMCDGDIVGIQSSDVCCSASCGTCGGSGCTGRDGGSESCCGGGVRASGRYCSITGEAPCM 283
[Close]
BLAST of mRNA_P-canaliculata_contig10227.360.1 vs. uniprot
Match: D7G3T6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3T6_ECTSI)

HSP 1 Score: 125 bits (313), Expect = 4.030e-26
Identity = 61/148 (41.22%), Postives = 85/148 (57.43%), Query Frame = 1 
Query:  895 EEVPANTCRNGFTGFEANDACCSASCGTCGGTGCSSLSGGPDDCCTRAILASGVMCDDSGAPPCILSDV--------------EEVVTCSNELPGVQSGDVCCSAECGTCGGTGCSGRPGGGDECCVGIISSSGVLCSESGASPCIVD 1296
            +EVP   C  G  G + +D CCS+SCG+CGGTGC+S  GG + CC   + ASG  C  +G  PC+                  +EV  C   + G+Q  D+CCS+ CG+CGGTGC+ R GG + CC G + +SG  CS +G +PC+ +
Sbjct:   20 DEVPM--CDGGIVGIQQSDICCSSSCGSCGGTGCTSRDGGSEACCGGGVRASGRFCSVTGEAPCMTGPAPTPXXXXXXXXXXTDEVPMCDGGIVGIQQSDICCSSRCGSCGGTGCTSRDGGSEACCGGGVRASGRYCSVTGEAPCMTN 165
[Close]
BLAST of mRNA_P-canaliculata_contig10227.360.1 vs. uniprot
Match: A0A6H5JVC9_9PHAE (AMOP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVC9_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 8.020e-26
Identity = 64/147 (43.54%), Postives = 84/147 (57.14%), Query Frame = 1 
Query:  898 EVPANTCRNGFTGFEANDACCSASCGTCGGTGCSSLSGGPDDCCTRAILASGVMCDDSGAPPCILS----------------DVEEVVTCSNELPGVQSGDVCCSAECGTCGGTGCSGRPGGGDECCVGIISSSGVLCSESGASPCI 1290
            EVP  TC  G  G +++D CCS SCG+CGGTGC+   GG D CC   + +SG  C  +G  PCI                  D   V  C   + G+QS DVCC++ CG+CGG+GC+GR GG D CC G + +SG  CS +G +PC+
Sbjct:   49 EVP--TCDGGIVGIQSSDVCCSLSCGSCGGTGCTGRDGGADACCGGGVRSSGRFCSVTGEAPCITGPAPTPEPTXXXXXXXXDEGAVPMCDGGIVGIQSSDVCCTSSCGSCGGSGCTGRDGGEDACCGGGVRASGRYCSVTGEAPCM 193
[Close]
BLAST of mRNA_P-canaliculata_contig10227.360.1 vs. uniprot
Match: D7FJ68_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ68_ECTSI)

HSP 1 Score: 122 bits (305), Expect = 2.670e-24
Identity = 63/133 (47.37%), Postives = 80/133 (60.15%), Query Frame = 1 
Query:  910 NTCRNGFTGFEANDACCSASCGTCGGTGCSSLSGG--PDDCCTRAILASGVMCDDSGAPPCILSDVEEVVTCSNELPGVQSGDVCCSAECGTCGGTGCSGRPGG--GDECCVGIISSSGVLCSESGASPCIVD 1296
            + C NG  G +  +ACC A CG CGGTGC+ L GG   D+CC   I   G +C  +   PC++ DV     CSN +PG+Q+G+ CC AECG CGGTGC+   GG   D CC+  I   G LCS +  +PCIVD
Sbjct: 2818 DVCSNGIPGIQTGNACCLAECGGCGGTGCAQLGGGLGADNCCMSEIEDFGELCSVTMEAPCVVDDV-----CSNGIPGIQTGNACCLAECGGCGGTGCAQLGGGLGADNCCMSEIEDFGELCSATMTAPCIVD 2945
[Close]
BLAST of mRNA_P-canaliculata_contig10227.360.1 vs. uniprot
Match: A0A6H5JG29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG29_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 1.240e-23
Identity = 63/135 (46.67%), Postives = 83/135 (61.48%), Query Frame = 1 
Query:  907 ANTCRNGFTGFEANDACCSASCGTCGGTGCSSLSGG--PDDCCTRAILASGVMCDDSGAPPCILSDVEEVVTCSNELPGVQSGDVCCSAECGTCGGTGCSGRPGGG---DECCVGIISSSGVLCSESGASPCIVD 1296
            ++ C NG  G ++ +ACC A CG CGG+GC+ L GG   D+CC   I   G +C    A PC++ D+     CSN +PG+QSG+ CC AECG CGG+GC+ + GGG   D CC   I   G LCS   A+PC+VD
Sbjct: 1573 SDMCSNGIPGIQSGNACCLAECGGCGGSGCAQLGGGLGEDNCCQSEIEDFGELCSVKMAAPCVVDDM-----CSNGIPGIQSGNACCLAECGGCGGSGCA-QLGGGLGEDNCCQSEIEDFGELCSVKMAAPCVVD 1701
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10227.360.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5D5_ECTSI6.970e-2947.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K3Y1_9PHAE1.410e-2845.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWJ0_9PHAE1.660e-2845.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G4E0_ECTSI4.760e-2740.91N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepI... [more]
D7G3U7_ECTSI1.380e-2649.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JTV1_9PHAE1.620e-2640.38Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7G3T6_ECTSI4.030e-2641.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JVC9_9PHAE8.020e-2643.54AMOP domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FJ68_ECTSI2.670e-2447.37WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JG29_9PHAE1.240e-2346.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig10227contigP-canaliculata_contig10227:2704..9645 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score124.4
Seed ortholog evalue1.2e-25
Seed eggNOG ortholog2880.D7FJ68
Preferred nameMTPAP
KEGG koko:K08342,ko:K16462,ko:K17478,ko:K18060
KEGG Pathwayko04136,ko04138,ko04140,map04136,map04138,map04140
EggNOG free text desc.importin-alpha family protein binding
EggNOG OGsCOG0086@1,KOG0260@2759,KOG4725@1,KOG4725@2759
EC2.7.7.19
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko01009,ko03029,ko03036,ko03110,ko04131,ko04812
Hectar predicted targeting categorysignal peptide
Exons13
Model size2711
Cds size1251
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815596.3347447-UTR-P-canaliculata_contig10227:2703..41151622815596.3347447-UTR-P-canaliculata_contig10227:2703..4115Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10227 2704..4115 -
1693494157.039127-UTR-P-canaliculata_contig10227:2703..41151693494157.039127-UTR-P-canaliculata_contig10227:2703..4115Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10227 2704..4115 -
1622815596.5295198-UTR-P-canaliculata_contig10227:9597..96451622815596.5295198-UTR-P-canaliculata_contig10227:9597..9645Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10227 9598..9645 -
1693494157.2026176-UTR-P-canaliculata_contig10227:9597..96451693494157.2026176-UTR-P-canaliculata_contig10227:9597..9645Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10227 9598..9645 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815596.3488286-CDS-P-canaliculata_contig10227:4115..43091622815596.3488286-CDS-P-canaliculata_contig10227:4115..4309Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10227 4116..4309 -
1693494157.0529459-CDS-P-canaliculata_contig10227:4115..43091693494157.0529459-CDS-P-canaliculata_contig10227:4115..4309Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10227 4116..4309 -
1622815596.3653724-CDS-P-canaliculata_contig10227:4453..46511622815596.3653724-CDS-P-canaliculata_contig10227:4453..4651Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10227 4454..4651 -
1693494157.0642936-CDS-P-canaliculata_contig10227:4453..46511693494157.0642936-CDS-P-canaliculata_contig10227:4453..4651Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10227 4454..4651 -
1622815596.3795564-CDS-P-canaliculata_contig10227:4897..49621622815596.3795564-CDS-P-canaliculata_contig10227:4897..4962Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10227 4898..4962 -
1693494157.0735383-CDS-P-canaliculata_contig10227:4897..49621693494157.0735383-CDS-P-canaliculata_contig10227:4897..4962Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10227 4898..4962 -
1622815596.3929458-CDS-P-canaliculata_contig10227:5573..56151622815596.3929458-CDS-P-canaliculata_contig10227:5573..5615Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10227 5574..5615 -
1693494157.0833778-CDS-P-canaliculata_contig10227:5573..56151693494157.0833778-CDS-P-canaliculata_contig10227:5573..5615Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10227 5574..5615 -
1622815596.4109857-CDS-P-canaliculata_contig10227:5812..58841622815596.4109857-CDS-P-canaliculata_contig10227:5812..5884Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10227 5813..5884 -
1693494157.0952668-CDS-P-canaliculata_contig10227:5812..58841693494157.0952668-CDS-P-canaliculata_contig10227:5812..5884Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10227 5813..5884 -
1622815596.4237092-CDS-P-canaliculata_contig10227:6181..62531622815596.4237092-CDS-P-canaliculata_contig10227:6181..6253Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10227 6182..6253 -
1693494157.1167614-CDS-P-canaliculata_contig10227:6181..62531693494157.1167614-CDS-P-canaliculata_contig10227:6181..6253Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10227 6182..6253 -
1622815596.4361413-CDS-P-canaliculata_contig10227:6815..68901622815596.4361413-CDS-P-canaliculata_contig10227:6815..6890Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10227 6816..6890 -
1693494157.1287954-CDS-P-canaliculata_contig10227:6815..68901693494157.1287954-CDS-P-canaliculata_contig10227:6815..6890Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10227 6816..6890 -
1622815596.4487398-CDS-P-canaliculata_contig10227:7208..72801622815596.4487398-CDS-P-canaliculata_contig10227:7208..7280Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10227 7209..7280 -
1693494157.1365879-CDS-P-canaliculata_contig10227:7208..72801693494157.1365879-CDS-P-canaliculata_contig10227:7208..7280Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10227 7209..7280 -
1622815596.4638658-CDS-P-canaliculata_contig10227:7585..76571622815596.4638658-CDS-P-canaliculata_contig10227:7585..7657Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10227 7586..7657 -
1693494157.1445951-CDS-P-canaliculata_contig10227:7585..76571693494157.1445951-CDS-P-canaliculata_contig10227:7585..7657Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10227 7586..7657 -
1622815596.4765253-CDS-P-canaliculata_contig10227:7966..81131622815596.4765253-CDS-P-canaliculata_contig10227:7966..8113Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10227 7967..8113 -
1693494157.1530974-CDS-P-canaliculata_contig10227:7966..81131693494157.1530974-CDS-P-canaliculata_contig10227:7966..8113Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10227 7967..8113 -
1622815596.4895606-CDS-P-canaliculata_contig10227:8593..86831622815596.4895606-CDS-P-canaliculata_contig10227:8593..8683Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10227 8594..8683 -
1693494157.1617684-CDS-P-canaliculata_contig10227:8593..86831693494157.1617684-CDS-P-canaliculata_contig10227:8593..8683Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10227 8594..8683 -
1622815596.5037422-CDS-P-canaliculata_contig10227:8896..89841622815596.5037422-CDS-P-canaliculata_contig10227:8896..8984Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10227 8897..8984 -
1693494157.1772728-CDS-P-canaliculata_contig10227:8896..89841693494157.1772728-CDS-P-canaliculata_contig10227:8896..8984Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10227 8897..8984 -
1622815596.5191085-CDS-P-canaliculata_contig10227:9533..95971622815596.5191085-CDS-P-canaliculata_contig10227:9533..9597Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10227 9534..9597 -
1693494157.1877432-CDS-P-canaliculata_contig10227:9533..95971693494157.1877432-CDS-P-canaliculata_contig10227:9533..9597Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10227 9534..9597 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig10227.360.1prot_P-canaliculata_contig10227.360.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig10227 4116..9597 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig10227.360.1

>prot_P-canaliculata_contig10227.360.1 ID=prot_P-canaliculata_contig10227.360.1|Name=mRNA_P-canaliculata_contig10227.360.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=417bp
MMTSIFQMVLLPMVLLVDVTYGLNSCFDPASSDFRDCNAGAFSTTSFPGE
LRLNNCGLVDDDIPDLIACFDDFGRELITSINLGGNAIEELPTNLFDGSW
PELEGLSIDENSLSTLPAGLFSELTNLEVLDLANNMIVELPEGAFEGLTA
LESLGLDFNLLTELPVGVFDGLGRLEVLDLDNNRLTELRADVFDSFGGRF
TILSLSENELTELPPGLFSGSSGLNSLNLDGNDLTTLPLDIFLPLTQISR
LDLSGNDNLQCVPQNSASSVLLPDTLVGDVSCEEVPANTCRNGFTGFEAN
DACCSASCGTCGGTGCSSLSGGPDDCCTRAILASGVMCDDSGAPPCILSD
VEEVVTCSNELPGVQSGDVCCSAECGTCGGTGCSGRPGGGDECCVGIISS
SGVLCSESGASPCIVD*
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mRNA from alignment at P-canaliculata_contig10227:2704..9645-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig10227.360.1 ID=mRNA_P-canaliculata_contig10227.360.1|Name=mRNA_P-canaliculata_contig10227.360.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=6942bp|location=Sequence derived from alignment at P-canaliculata_contig10227:2704..9645- (Pelvetia canaliculata dioecious)
CAGCTGCTAGATATCCTCTTGTACAGTCCGAAGGCTGGTTACTCAGACAT
GATGACGTCCATCTTTCAAATGGTTTTGCTGCCGATGGTGCTTCTGGTGG
ATGTCACCTACGGTAAGCGGCCCCCACGAGCGCAGTCGGCCATCTCGGAG
GAAAACCCGCAAACATTGTGTCCGTAATAAACACGGCTTCCCTTCTATCG
CCGCGCCATACGCGTAGTTTTACCGTTCGTAGGTTTTGTTTCTTCTGCCT
GGTACCAACGGACTGGATCAATCTTACAGCCTGAGGAGGGGTGTTTATCG
GTTATCTTCCTCATCTGGTGTTGAACTATCTCCTTTCGTTATTTCCCCCC
GCTGACTTGACTGTAACGGAACAGCCTCGTTTGCCTACAATTCTACATGT
ATATAGAGAGAGTCGCCCCTCCTTGTTGCTGCCATATTGTGGGCTGCAAC
TTAGCATATAGTTGGTGGTTTTTCACTACGGATCGCTTTTCGCTCGAATT
GGGCTTTGCCTATTATAAACAAAACAGGTTACTGGACAAATGCGTATACA
TACCTTGAATGGTCTTAGCGACACCCATGCTTCACAGTTACCCCTTCTCA
TCCTACCAGGCTGATAATATAACCTCGCTAATAGTTTCGGCATGTTCCGC
TGCATTTCAAGGTTTGAACAGCTGTTTCGACCCCGCTAGCTCGGACTTCC
GTGACTGTAACGCTGGGGCGTTCTCCACCACCAGCTTTCCAGGAGAGTTG
TGAGTCACGTCCACAACAGTAACCGTCGCTATTATCGCCTTGTTGTCACC
TCTTTTTACCTGGTAGTACGGAATCACAAGCGAGGTTTGGAAGAAAATGC
AACGCCGCCCCTGGCGCAGCAGCACTGCCGTCCACCGAAAAACAATAAAT
TATGCATTTGAAGGCTCGACACGCCACGAAAGGATCATATCGAGAGTGAC
CTTGTGCCGCAGGCGACTGAACAATTGCGGTCTTGTGGACGACGACATTC
CAGACCTTATCGCATGCTTCGACGACTTTGGGCGCGAACTTATAACCTCT
ATGTAAGTGATAACCCAGAGAGGGCGCCTTGGTGTGCAAGCCACATACAG
TCAGCCGGCATGCTTATCAACGCTTCGCGCCCTACTTCGTTGCTTCACAC
CTGGTACCTGTTAATAGTGCTACTTTTCTTGCCTTTTTTCCCCTCCTCAT
CTCTGCTTCCCGGGCTTTTCTTCTCCGATCGTGTTCCCGTATTGGTTTGG
TTTGTTCTACCTTGTGACCATGGCTGGATTCGTAGCGAATCAGTTGATGT
GAGATAAACAACAACAACAACAACTTCGTATTCTCCAAGGTAACCGCGCC
ATATACACTTTTCATTGAAAATACATAAGTATAGCTCGATTCGACGGAGG
ATGCGGAAAAGGGGGAGCACCTTAAACGATTAGTAACTTTTAGTCATGCA
AAACCCTACGCCTACCCGCCTCCCTGTCCCGTCGTATACGCTGTTCTCAC
GTCGATGCCATTGGATGGGTTATACCAAATAGTAACTTGGGAGGCAACGC
TATCGAGGAACTTCCTACTAATTTGTTCGACGGCTCCTGGCCGGAGCTGG
AAGGGTTATCGATAGATGAGAACAGCCTTTCCACGCTGCCGGCTGGCTTG
TTCTCTGAACTGACGAACCTGGAAGTTTTGTAAGTGATCCCCTTGCTAAG
AAGCTCGCTTCCCTTGTGTCTTGGGAGAACCCACGGTGCGTCGGTTCCTG
TCGCTGATGCTCGTGAACTGCTTCACCACTGCCCCGATAAAGACATCCTC
ATTTACCCAGCTTGACACCAAAGCCACCGTATTTGCTTACAAATCTAGAA
TACGTTGTAGATATGGATAGCCTAAAGTTCTATATCTCTCGCTGTTTTCA
GGGGTGTCAACGAAGATAAATATAAAGCAGTCCACCTGACACGCTCCCTC
TGTCGCCTTCTAACACCGTTACCTTCTCCCGAGACCAGAGACCTGGCCAA
TAACATGATCGTGGAATTACCCGAGGGCGCCTTTGAGGGTCTTACCGCGC
TCGAATCATTGTGAGTTAGTTCCTCTCGGGCGGGAGCCACGGCCGACCAA
TTCACAACGTTTGTCAACTCGGGGCGTCCATTGCACGATAAGTACTTCCG
CAGCAAGTGCGGAAGTGCACGGTCCACACGAATTGTGCGAGCTTTTCCGG
CACGAATATAATGGTACATGTGTTTGATGCTTCACTGAAATAAGATAAAG
TTCGAGTTCGCTGCTTGTTCATGTGAATGATTCATAGAACCGTGAGTGGG
TTAAAACCCAATGTGACCGCGGTAACCACCGGTGCTGTTGTGATCGGTTT
ATTGTCCTTGTCCAGGGGACTCGACTTCAACTTACTTACAGAGCTACCGG
TCGGCGTGTTCGATGGCCTCGGACGGTTGGAAGTCTTGTGAGTGGTAGCG
AGGCTGTTTCAAAGATATCTATATGTCGGTACATTCTTCGTGCTTGGTAT
AACTGATTAGAAACTACACGCTAGAACCATTTATTTAATGCATATCGTCG
AGGTCCTGGCAGCTGTCCACGCCCGAGGGCTTCGATCCATACTGACTGCT
AGCCCCGTTTACTCGCGGTTCCGTGGAAAGCAAGCTGAGAATTTCCGAAG
TCCAAGCTCGTAGCATCGATGGGCCATATCGTTGTCTCCGTCGTTGTAAA
GAATCTCGAGTTTTTCTGCTGCCTCCGCGGTGACACAATTTGTATTGTTC
TCCAGGGATCTCGACAATAACAGACTGACCGAGCTTAGGGCCGACGTCTT
CGACAGCTTTGGAGGAAGGTTCACAATTTTGTAAGTTCACCACCTCGAGC
TGCGTCACTTTCGGGCGTGTCTGACACTAACCTGCCTGGGAAAAGGGTAA
CCGTGCAAATGTCCTAGGTGTAATCGAGCTGGAGAAACAGCGGGAAGAGG
TTGAGCCAGTGATGTAACAATCGGATAGGGCTTAACCTAGTTTTTGCAAT
TTTCACGACCCCCGTCTACTGAACTTGACTGGTTCTAAAGTATAACTCCA
AATCCATGCGAATGTTTTATCACTGTCGACTCTAAAATGACCAACATATT
GCGGGACGTGACTCGCGGACTTTTCTCCCGTTATCATTGACATTATAATA
AAACAGTTGGCCACTCCACCGGGGTCTATGCCCTCCCAAAGATCAGCAGG
TTTTTTCTCCATGTTTTCTGCCCAAACCGGCTGCGTACACATACATGTAT
CTGTTTCACCCTCTTGCGTTTGGATCGTATCATGTTTCCCCCGAAAGATC
TTACTGCAACTAATGTATGTTGCCCGAGTGATGTACCAGAGTGATGCACC
TAATCATTTTCGACGACGTTTGCCTAATTTTATCTTTAACAGATCTCTGT
CTGAAAACGAACTCACCGAACTGCCGCCGGGCCTGTTTTCGGGATCGAGT
GGCTTGAACTCCCTGTGAGTTGTTCATTTTATTGGGCGACCTACATTTTT
TACTTATGTTTTAGCTCTTCGACTTGACAGTTAGATCCAAAGCTCTAATA
GATAGTCGTAGGTAGGTTTGGATTTCCGGTCACAAGCATGTAGTATATAG
TTTACTTAGACGGCAGTGTGCTGGTATCCAAAGTGTTAGTTTACTGCATA
TTTCCAGTTATAAACCGACTTATGTATTTTGCCTGTCGTTACGAATACCA
CTCAACAGTGCGACCCCCATAAATACCGTTGCCGCCGTGCCTACGCGCTT
TCTGATCCCAGGAACCTCGACGGAAACGATCTGACAACGCTTCCTTTGGA
CATCTTCTTACCTTTGACGCAAATATCTCGCCTGTGAGTGTCCAACGATC
TGCGAAAAGGGCCTCTCAGCACACTAAGCCTGTACGCTATGGGCCGTGAG
AAGACCGGGATATTGTAGTCATTACCCTACGGTGCTAATAAAGTACCAGA
GTCCTTATGTTCCTGACCCACCACTTTCCCACCTCCCGCGTTTTTGTATA
ATACAATCATTTTGTGCACCGTCTGTGCAGGGATCTGAGCGGCAACGACA
ATCTCCAATGTGTTCCACAGAAGTGAGTGCAGCGTTGGCCGTGACCAGGA
AGGTGTAGGGACAGCAGACCACCGTTGGCGTAAGCATGTATTACGTTACG
AATACGTTAGAGACACAATTGACCACGGTGTTCGGTCTGGGCCTCGAATG
TGGAGCCTCCTCATATCAACTTCCAACTACTGCTGTTTTCTTCGCACAGC
TCAACGCAATCAACTAAATCCCAAGAACCAAAACATGCTCGGGTAAATGA
TGCCCTTAGAAATACGAGACGGGAGATTGGTGTCTATGGTCAGTCGATTT
TCCGGCCAAATATACCCAGAGCAGCTCGACACACCCTCTCTATTAATGCA
CTTCCGTTCGTGTACCTTTCTTGATCATGAGATGTCATACATGAGTAATT
GATTATCAAAAACTAGATGCATCATCAACGTAGATAATGCCGTAGTTTAG
ATGTCCCCTTTATAGAAATTTTATATGGTGTTCTTCTTCCTGGTATCAAA
AAAAGAGAAAGACCTGAGATATCGATCGCCCGATGCGTGCCTAGATGTAC
GCACTCCCTTCACCTGCGCTAACGTTAATCACCCTCTCTGCCTGGACCTC
CGCTTTGCCAAATCTCTACCACGGTCGCATCAGCTCTGCTTCATCTGTTT
TGCTTCCTGACACCTTGGTAGGAGATGTCAGCTGTGAAGAAGTACCAGGT
GATTATGTTAGTGTACCACATGAGTTGTGGTTGGGTCCGCTTGACGTTTT
GGGTATATTGAGGGCATGCCTGTCCCGAACCTCTACGTGTGATGCGCATT
ACATCGAGGAAACCCATTACTGTTGCGCCGAGATTGCGATTATCTCTCTC
TCTCTCTCTGAAGCCGAGGAAAAAACAATCCGCTCTCCTTGTATACAACC
TCGCCGTGGCTCTCGTGACGGTCATACTACGTCACATAACACAGCAAACA
CGTGCAGGAACGGATTCACGGGGTTCGAGGCGAATGACGCTTGCTGCTCG
GCTTCGTGCGGCACCTGCGGCGGAACTGGCTGCTCAAGCCTCTCTGGGGG
TCCTGACGACTGCTGCACTCGGGCAATTTTAGCGAGTGGCGTCATGTGCG
ACGATTCTGGAGCCCCCCCTTGCATCCTAAGCGACGTGGAAGGTGTGCTG
TTGCGGCGTTGCTTGTTCCGGTTGAATTAAGCATGGCCTGTACAACATGC
TCATAACAGAGTTACACAAGTCGATCCCCTAACCAAACATTTTTTCCCAC
TGCGCCGTCGTCGCGTTCACAACAACTGATTCACAGAAGTCGTCACCTGC
AGCAACGAACTTCCTGGTGTTCAGTCGGGCGATGTCTGCTGCTCAGCAGA
ATGCGGCACGTGTGGTGGAACCGGTTGTAGCGGACGTCCTGGCGGCGGGG
ATGAATGTTGTGTGGGAATCATCTCGAGCAGCGGCGTCTTGTGCAGCGAA
TCGGGAGCTTCTCCTTGCATCGTAGATTGAGGTGAACGTGTGTGTGCGCA
ATGTAGAGGTAAATGTGGTTCGCAAGTAAGGCGACAAGTCATTTTTTGGT
TGCTGACGGAATACGGCCCCTGTCGAATGCCTTTTGGCTTGCGTCGGTGA
AAATCGGCCTCGAAAACGCGGGGTAATGGGCTATTCAACAGCATCGCTTC
TTTCGAAAATACAAGCTATATAGAACGCCCCAAATACGTCACCGGATTTC
CTCGCTCGTCCCCCCACTATTATTTCGGCCACTGCGCTGTTGAAGGGATC
AAATGTTCGACTTAGCAAGAAGATACTTTTCAGCTAGTCTATCTGCTCTC
GCTGTGTTGGTGGTCTCTTTGTGTATCGTGCCAAATGTGCCTCTAGTGCG
CAAGTGGACGGACGCTGTGGCAAAACAAGTGACACCTATATGAGGGTGTA
AGGGAAGCCATGCGGAAAAGCACCGGAGCTCTTGAAGGACCACTTTCACT
TGTATGGATGTAGTAGTGTTTCAAAGCAGTAAAGTGAAAGTTACATTTTT
ATTTTTATCTCTTATCGGTGCTAACCTTCAAGGGTTCGATTGCCTCCGCG
CACGAAACGGGCGTATTTCCGGTTGTAAGAGGATAGGCAGAAAGGGACGC
GAAGAGTTGCTACTGATGACTCTACCTCTACTACTATGGACGTACAATAG
CGCGCAAACTACACTGGTCCGGGACATAAATGTGTCCTTTGACAACTGAA
GCTTCTAACACTTAACACCCTCGCAATGGAAAGCTTGGCTTAACGATCTC
GCTTAGAGCGTTACGGAGCTCGTGGAGCAGCTGGTGAGGGTGTGGTAAAA
GAGCGCCTTCTTTAGGTTATCTCGGTGATTATTCAGGTGGTTTTCACACG
GTGGGTATACAGATTCAAGCTGATGCTGAGTACGAGGCGGGCAGCAAGGA
CATGAGTTGGTCAGTCGGTGGTTCGGGTGGGCGGGCACTGCCGTGAGTCA
CAGAAGGGATATCTACACTTTAGTAAGGTTCTGGATTTGACGTGTCCTAA
ACGGAGTCTCGTGTGGGACCGGTGATGTTCTGTCCGTGATATTCTCTGAC
AAAAGCTGGTAGGCCACCCGCCCTATCGGTTTGCTTTCCTGTATATTTGC
AGGAGTGTGTGGATTTGTGTACAGTAGCAGTCACATGTATTTTGGTCGCG
GCAGGTCATGGTGTAGCAGGCATATAGACCTATTCGTCTGTGGTTATGTT
TGGTGCGTCTCTGCTGTCAACCGTCCTCTCGTCTCGGAGATTGTTTTAAT
AATGCATTGCTTATATGTCTCTTGCTTTCCCTCATTACCTCCCATATATA
TTGATGATGTGATGGCAGATGTCCTATAGGTTGAGAATTGCATTCCGGGA
ATAGGAGAGAAGAAGGACGAAAGGGTAAATATTTTCCATCGC
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Coding sequence (CDS) from alignment at P-canaliculata_contig10227:2704..9645-

>mRNA_P-canaliculata_contig10227.360.1 ID=mRNA_P-canaliculata_contig10227.360.1|Name=mRNA_P-canaliculata_contig10227.360.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=2502bp|location=Sequence derived from alignment at P-canaliculata_contig10227:2704..9645- (Pelvetia canaliculata dioecious)
ATGATGACGTCCATCTTTCAAATGGTTTTGCTGCCGATGGTGCTTCTGGT
GGATGTCACCTACGATGATGACGTCCATCTTTCAAATGGTTTTGCTGCCG
ATGGTGCTTCTGGTGGATGTCACCTACGGTTTGAACAGCTGTTTCGACCC
CGCTAGCTCGGACTTCCGTGACTGTAACGCTGGGGCGTTCTCCACCACCA
GCTTTCCAGGAGAGTTGTTTGAACAGCTGTTTCGACCCCGCTAGCTCGGA
CTTCCGTGACTGTAACGCTGGGGCGTTCTCCACCACCAGCTTTCCAGGAG
AGTTGCGACTGAACAATTGCGGTCTTGTGGACGACGACATTCCAGACCTT
ATCGCATGCTTCGACGACTTTGGGCGCGAACTTATAACCTCTATGCGACT
GAACAATTGCGGTCTTGTGGACGACGACATTCCAGACCTTATCGCATGCT
TCGACGACTTTGGGCGCGAACTTATAACCTCTATTAACTTGGGAGGCAAC
GCTATCGAGGAACTTCCTACTAATTTGTTCGACGGCTCCTGGCCGGAGCT
GGAAGGGTTATCGATAGATGAGAACAGCCTTTCCACGCTGCCGGCTGGCT
TGTTCTCTGAACTGACGAACCTGGAAGTTTTTAACTTGGGAGGCAACGCT
ATCGAGGAACTTCCTACTAATTTGTTCGACGGCTCCTGGCCGGAGCTGGA
AGGGTTATCGATAGATGAGAACAGCCTTTCCACGCTGCCGGCTGGCTTGT
TCTCTGAACTGACGAACCTGGAAGTTTTAGACCTGGCCAATAACATGATC
GTGGAATTACCCGAGGGCGCCTTTGAGGGTCTTACCGCGCTCGAATCATT
AGACCTGGCCAATAACATGATCGTGGAATTACCCGAGGGCGCCTTTGAGG
GTCTTACCGCGCTCGAATCATTGGGACTCGACTTCAACTTACTTACAGAG
CTACCGGTCGGCGTGTTCGATGGCCTCGGACGGTTGGAAGTCTTGGGACT
CGACTTCAACTTACTTACAGAGCTACCGGTCGGCGTGTTCGATGGCCTCG
GACGGTTGGAAGTCTTGGATCTCGACAATAACAGACTGACCGAGCTTAGG
GCCGACGTCTTCGACAGCTTTGGAGGAAGGTTCACAATTTTGGATCTCGA
CAATAACAGACTGACCGAGCTTAGGGCCGACGTCTTCGACAGCTTTGGAG
GAAGGTTCACAATTTTATCTCTGTCTGAAAACGAACTCACCGAACTGCCG
CCGGGCCTGTTTTCGGGATCGAGTGGCTTGAACTCCCTATCTCTGTCTGA
AAACGAACTCACCGAACTGCCGCCGGGCCTGTTTTCGGGATCGAGTGGCT
TGAACTCCCTGAACCTCGACGGAAACGATCTGACAACGCTTCCTTTGGAC
ATCTTCTTACCTTTGACGCAAATATCTCGCCTGAACCTCGACGGAAACGA
TCTGACAACGCTTCCTTTGGACATCTTCTTACCTTTGACGCAAATATCTC
GCCTGGATCTGAGCGGCAACGACAATCTCCAATGTGTTCCACAGAAGGAT
CTGAGCGGCAACGACAATCTCCAATGTGTTCCACAGAACTCTGCTTCATC
TGTTTTGCTTCCTGACACCTTGGTAGGAGATGTCAGCTGTGAAGAAGTAC
CAGCTCTGCTTCATCTGTTTTGCTTCCTGACACCTTGGTAGGAGATGTCA
GCTGTGAAGAAGTACCAGCAAACACGTGCAGGAACGGATTCACGGGGTTC
GAGGCGAATGACGCTTGCTGCTCGGCTTCGTGCGGCACCTGCGGCGGAAC
TGGCTGCTCAAGCCTCTCTGGGGGTCCTGACGACTGCTGCACTCGGGCAA
TTTTAGCGAGTGGCGTCATGTGCGACGATTCTGGAGCCCCCCCTTGCATC
CTAAGCGACGTGGAAGCAAACACGTGCAGGAACGGATTCACGGGGTTCGA
GGCGAATGACGCTTGCTGCTCGGCTTCGTGCGGCACCTGCGGCGGAACTG
GCTGCTCAAGCCTCTCTGGGGGTCCTGACGACTGCTGCACTCGGGCAATT
TTAGCGAGTGGCGTCATGTGCGACGATTCTGGAGCCCCCCCTTGCATCCT
AAGCGACGTGGAAGAAGTCGTCACCTGCAGCAACGAACTTCCTGGTGTTC
AGTCGGGCGATGTCTGCTGCTCAGCAGAATGCGGCACGTGTGGTGGAACC
GGTTGTAGCGGACGTCCTGGCGGCGGGGATGAATGTTGTGTGGGAATCAT
CTCGAGCAGCGGCGTCTTGTGCAGCGAATCGGGAGCTTCTCCTTGCATCG
TAGATTGAAAGTCGTCACCTGCAGCAACGAACTTCCTGGTGTTCAGTCGG
GCGATGTCTGCTGCTCAGCAGAATGCGGCACGTGTGGTGGAACCGGTTGT
AGCGGACGTCCTGGCGGCGGGGATGAATGTTGTGTGGGAATCATCTCGAG
CAGCGGCGTCTTGTGCAGCGAATCGGGAGCTTCTCCTTGCATCGTAGATT
GA
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