prot_P-canaliculata_contig10216.342.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-canaliculata_contig10216.342.1
Unique Nameprot_P-canaliculata_contig10216.342.1
Typepolypeptide
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length117
Homology
BLAST of mRNA_P-canaliculata_contig10216.342.1 vs. uniprot
Match: A0A6H5KBP8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBP8_9PHAE)

HSP 1 Score: 134 bits (338), Expect = 3.650e-35
Identity = 72/113 (63.72%), Postives = 80/113 (70.80%), Query Frame = 0
Query:    1 MVFANTAASCKLACEALAEEGFSFVSYHKEVAPRDRLENLKALKSGSAKILVCTDLASRGIDVPSVTRIVQMEMATNVVHHLXXXXXXXXXXXXXXATNFFDSSTKASKECLT 113
            MVF NTA+SCK A EALAEEGFS V YHK++ P +RL NL AL+SG AKILVCTDLA+RGIDVPSVT IVQMEMATNVV HL              ATNF+D  TK     +T
Sbjct:  317 MVFTNTASSCKRAYEALAEEGFSVVPYHKDIVPLERLANLHALRSGRAKILVCTDLAARGIDVPSVTNIVQMEMATNVVQHLHRLGRAARAGRTGKATNFYDDLTKDLVNSIT 429          
BLAST of mRNA_P-canaliculata_contig10216.342.1 vs. uniprot
Match: D7FR69_ECTSI (DEAD box helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR69_ECTSI)

HSP 1 Score: 135 bits (341), Expect = 7.540e-35
Identity = 73/113 (64.60%), Postives = 80/113 (70.80%), Query Frame = 0
Query:    1 MVFANTAASCKLACEALAEEGFSFVSYHKEVAPRDRLENLKALKSGSAKILVCTDLASRGIDVPSVTRIVQMEMATNVVHHLXXXXXXXXXXXXXXATNFFDSSTKASKECLT 113
            MVF NTAASCK A EALAEEGFS V YHK++ P +RL NL AL+SG AKILVCTDLA+RGIDVPSVT IVQMEMATNVV HL              ATNF+D  TK     +T
Sbjct:  517 MVFTNTAASCKRAYEALAEEGFSVVPYHKDIVPLERLANLHALRSGRAKILVCTDLAARGIDVPSVTNIVQMEMATNVVQHLHRLGRAARAGRTGKATNFYDDLTKDLVNSIT 629          
BLAST of mRNA_P-canaliculata_contig10216.342.1 vs. uniprot
Match: A0A7S2R527_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R527_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 8.390e-19
Identity = 55/114 (48.25%), Postives = 66/114 (57.89%), Query Frame = 0
Query:    1 MVFANTAASCKLACEALAEEGFSFVSYHKEVAPRDRLENLKALKSGSAKILVCTDLASRGIDVPSVTRIVQMEMATNVVHHLXXXXXXXXXXXXXXATNFFDSSTKASKECLTG 114
            MVFANTA +   ACE L + G     YHKEV    R ENL    SG   ILVCTD+A+RGID+  V  +VQ E A+NVV HL      XXXXX   AT+F D S+  ++    G
Sbjct:  157 MVFANTATTAAAACEYLRKAGLPAAEYHKEVLVGIREENLGLFSSGQVPILVCTDMAARGIDIQGVQHVVQFEFASNVVQHLHRLGRTXXXXXQGTATHFVDPSSDLAERIRRG 270          
BLAST of mRNA_P-canaliculata_contig10216.342.1 vs. uniprot
Match: A0A7S4D991_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D991_HETAK)

HSP 1 Score: 80.9 bits (198), Expect = 5.500e-16
Identity = 40/82 (48.78%), Postives = 53/82 (64.63%), Query Frame = 0
Query:    1 MVFANTAASCKLACEALAEEGFSFVSYHKEVAPRDRLENLKALKSGSAKILVCTDLASRGIDVPSVTRIVQMEMATNVVHHL 82
            MVF NT A+ +    ALA EG    +YHK+  P +R   L   ++G + +LVCTDLA+RG+DVP VT ++Q E A NVV HL
Sbjct:  188 MVFCNTVAAAEEVAAALAAEGVPCAAYHKKTPPAEREGALARFRAGESPVLVCTDLAARGLDVPGVTHVLQAEFAPNVVQHL 269          
BLAST of mRNA_P-canaliculata_contig10216.342.1 vs. uniprot
Match: W7TS57_9STRA (RNA helicase DEAD-box type n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TS57_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 1.110e-15
Identity = 43/102 (42.16%), Postives = 58/102 (56.86%), Query Frame = 0
Query:    1 MVFANTAASCKLACEALAEEGFSFVSYHKEVAPRDRLENLKALKSGSAKILVCTDLASRGIDVPSVTRIVQMEMATNVVHHLXXXXXXXXXXXXXXATNFFD 102
            MVF NTA +      A+   GF  V++HKEV   +R  NL+  +S    +LVCTDLA+RG+D+P V ++VQ+E A NVV HL              A NF+D
Sbjct:  485 MVFLNTATAAARTQIAVQAAGFPSVAFHKEVRREEREANLQRFRSNQVPLLVCTDLAARGLDIPDVRQVVQVEFAPNVVQHLHRIGRAVRAGREGRAVNFYD 586          
BLAST of mRNA_P-canaliculata_contig10216.342.1 vs. uniprot
Match: A0A0G4ESI9_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4ESI9_VITBC)

HSP 1 Score: 76.3 bits (186), Expect = 8.270e-14
Identity = 39/106 (36.79%), Postives = 58/106 (54.72%), Query Frame = 0
Query:    1 MVFANTAASCKLACEALAEEGFSFVSYHKEVAPRDRLENLKALKSGSAKILVCTDLASRGIDVPSVTRIVQMEMATNVVHHLXXXXXXXXXXXXXXATNFFDSSTK 106
            ++FANT  S K    AL + G   V  H ++   +R+ NL A + G + ILVCTDLA+RG+D+P +  ++Q + A NVV HL          X   A NF+   ++
Sbjct:  354 IIFANTVNSAKAVANALFDVGIPVVPCHADLRAAERISNLDAFRRGISSILVCTDLAARGLDIPRIATVIQFDFAPNVVAHLHRVGRAARAGXAGHAINFYGKDSE 459          
BLAST of mRNA_P-canaliculata_contig10216.342.1 vs. uniprot
Match: A0A1Z5JPU2_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JPU2_FISSO)

HSP 1 Score: 74.3 bits (181), Expect = 3.940e-13
Identity = 39/86 (45.35%), Postives = 56/86 (65.12%), Query Frame = 0
Query:    1 MVFANTAASCKLACEALAEEGFSFVSYHKEVAPRDRLENLKALK----SGSAKILVCTDLASRGIDVPSVTRIVQMEMATNVVHHL 82
            M+F N+    + A  AL   G S + YH ++  ++R E L+A +    +G + ILVCTDLASRG+DVP VT ++Q++ ATNVV HL
Sbjct:  343 MIFLNSVQDVENASAALQRAGVSVLRYHAKLNLQERTETLEAFRQSTANGQSSILVCTDLASRGLDVPDVTLVIQLQFATNVVTHL 428          
BLAST of mRNA_P-canaliculata_contig10216.342.1 vs. uniprot
Match: A0A7S2WDP9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WDP9_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 5.400e-13
Identity = 37/82 (45.12%), Postives = 51/82 (62.20%), Query Frame = 0
Query:    1 MVFANTAASCKLACEALAEEGFSFVSYHKEVAPRDRLENLKALKSGSAKILVCTDLASRGIDVPSVTRIVQMEMATNVVHHL 82
            +VF NT  SC+    AL + G S + YH E+    RLE+L+A K+     LVCTDLASRG+D+PSV R+V  +   N + +L
Sbjct:  339 LVFCNTVLSCRAVEHALRDAGCSSLGYHGEMNSAARLESLEAFKAADVPTLVCTDLASRGLDMPSVARVVMFDFPPNPIDYL 420          
BLAST of mRNA_P-canaliculata_contig10216.342.1 vs. uniprot
Match: A0A7S2VIJ9_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2VIJ9_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 1.110e-12
Identity = 37/87 (42.53%), Postives = 55/87 (63.22%), Query Frame = 0
Query:    1 MVFANTAASCKLACEALAEEGFSFVSYHKEVAPRDRLENLKALKS-----GSAKILVCTDLASRGIDVPSVTRIVQMEMATNVVHHL 82
            +VF NT +SC+ A  AL+E G + +SYH ++   DR ENL+  +      G+A +LVCTD+ASRG+DVP V  +V  +   N + +L
Sbjct:  182 LVFCNTVSSCRAAEHALSESGVTSLSYHGDLNSDDREENLQQYRKAGEGEGNASVLVCTDIASRGLDVPQVDHVVMFDFPLNPIDYL 268          
BLAST of mRNA_P-canaliculata_contig10216.342.1 vs. uniprot
Match: A0A7S3ZMN7_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZMN7_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 1.300e-12
Identity = 42/104 (40.38%), Postives = 52/104 (50.00%), Query Frame = 0
Query:    1 MVFANTAASCKLACEALAEEGFSFVSYHKEVAPRDRLENLKALKSGSAKILVCTDLASRGIDVPSVTRIVQMEMATNVVHHLXXXXXXXXXXXXXXATNFFDSS 104
            MVF  TA       E LA  G +   Y K+V P  RL  L    S    +LVCTDLA+RG+D+P V R+VQ + AT+ V HL              A +F DSS
Sbjct:  309 MVFCKTANRASAVSERLALGGIAAAPYTKDVDPERRLATLDLFASAKINVLVCTDLAARGLDLPEVKRVVQYDFATDAVSHLHRVGRAARAGAAASAVSFVDSS 412          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10216.342.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KBP8_9PHAE3.650e-3563.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FR69_ECTSI7.540e-3564.60DEAD box helicase n=1 Tax=Ectocarpus siliculosus T... [more]
A0A7S2R527_9STRA8.390e-1948.25Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S4D991_HETAK5.500e-1648.78Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
W7TS57_9STRA1.110e-1542.16RNA helicase DEAD-box type n=2 Tax=Monodopsidaceae... [more]
A0A0G4ESI9_VITBC8.270e-1436.79Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
A0A1Z5JPU2_FISSO3.940e-1345.35Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A7S2WDP9_9STRA5.400e-1345.12Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2VIJ9_9STRA1.110e-1242.53Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S3ZMN7_9STRA1.300e-1240.38Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001650Helicase, C-terminalSMARTSM00490helicmild6coord: 11..92
e-value: 2.3E-20
score: 83.6
IPR001650Helicase, C-terminalPFAMPF00271Helicase_Ccoord: 1..92
e-value: 3.6E-20
score: 72.4
IPR001650Helicase, C-terminalPROSITEPS51194HELICASE_CTERcoord: 1..116
score: 15.523
NoneNo IPR availableGENE3D3.40.50.300coord: 1..113
e-value: 6.1E-33
score: 116.3
NoneNo IPR availablePANTHERPTHR24031:SF627ATP-DEPENDENT RNA HELICASE DBPAcoord: 2..106
NoneNo IPR availablePANTHERPTHR24031RNA HELICASEcoord: 2..106
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 1..106

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig10216contigP-canaliculata_contig10216:4105..9514 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig10216.342.1mRNA_P-canaliculata_contig10216.342.1Pelvetia canaliculata dioeciousmRNAP-canaliculata_contig10216 4105..11615 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-canaliculata_contig10216.342.1 ID=prot_P-canaliculata_contig10216.342.1|Name=mRNA_P-canaliculata_contig10216.342.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=117bp
MVFANTAASCKLACEALAEEGFSFVSYHKEVAPRDRLENLKALKSGSAKI
LVCTDLASRGIDVPSVTRIVQMEMATNVVHHLHRLGRAARAGRTGRATNF
FDSSTKASKECLTGPM*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001650Helicase_C
IPR027417P-loop_NTPase