mRNA_P-canaliculata_contig9987.24102.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig9987.24102.1 vs. uniprot
Match: D7G9B2_ECTSI (Magnesium and cobalt transport protein CorA n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9B2_ECTSI) HSP 1 Score: 429 bits (1103), Expect = 4.570e-132 Identity = 218/262 (83.21%), Postives = 235/262 (89.69%), Query Frame = 2 Query: 731 SDDILHVVLDRISFKHYTADNPTVAGASSFEREQVSVFLVGDHTVLFIEPKSSAVSDRISNRIIYAGSKLRLNNARYLVYSLMDSIVDDVFPIMQHFQKWLVELQGKLHSSDDCPSLEVVRAIQQISRDMHMITYYLRPMKMVAIQLITDLPGNDMDLKRHLEDLRDHLLMLEEQAMRMSTWSRSLNKDWVNEQQHRMNQVVYILTMVTSAFMPAQFLSSVFGMNFKFMPELNWRYSYASFWVLVALLALFIFTLYKRHKWL 1516
+++ILHVVL RIS + PT+ S+FEREQVSVFLVGDHTVLFIEP S VSD+ISNRI YAGSKLRLNNARYLVYSLMDSIVDDVFPIMQ FQ WLV+LQ +LHS D PSL++VRAIQQISRDMHMIT+YLRPMK+VA QLITDLPGND DLKRHLEDLRDHLLMLEEQA+RMSTWSRSLNKDWVNEQQHRMNQVVYILTMVTSAFMPAQFL+ VFGMNFKFMPELNWRYSYASFWVLVALLA +T+YKRHKWL
Sbjct: 434 AEEILHVVLGRISLRE-----PTLGRPSNFEREQVSVFLVGDHTVLFIEPTRSKVSDQISNRIYYAGSKLRLNNARYLVYSLMDSIVDDVFPIMQQFQAWLVQLQEQLHSEDAGPSLDIVRAIQQISRDMHMITFYLRPMKVVAAQLITDLPGNDADLKRHLEDLRDHLLMLEEQALRMSTWSRSLNKDWVNEQQHRMNQVVYILTMVTSAFMPAQFLTGVFGMNFKFMPELNWRYSYASFWVLVALLAFSSYTVYKRHKWL 690
BLAST of mRNA_P-canaliculata_contig9987.24102.1 vs. uniprot
Match: A0A6H5L3P2_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3P2_9PHAE) HSP 1 Score: 429 bits (1103), Expect = 1.120e-129 Identity = 218/262 (83.21%), Postives = 235/262 (89.69%), Query Frame = 2 Query: 731 SDDILHVVLDRISFKHYTADNPTVAGASSFEREQVSVFLVGDHTVLFIEPKSSAVSDRISNRIIYAGSKLRLNNARYLVYSLMDSIVDDVFPIMQHFQKWLVELQGKLHSSDDCPSLEVVRAIQQISRDMHMITYYLRPMKMVAIQLITDLPGNDMDLKRHLEDLRDHLLMLEEQAMRMSTWSRSLNKDWVNEQQHRMNQVVYILTMVTSAFMPAQFLSSVFGMNFKFMPELNWRYSYASFWVLVALLALFIFTLYKRHKWL 1516
+++ILHVVL RIS + PT+ S+FEREQVSVFLVGDHTVLFIEP S VSD+ISNRI YAGSKLRLNNARYLVYSLMDSIVDDVFPIMQ FQ WLV+LQ +LHS D PSL++VRAIQQISRDMHMIT+YLRPMK+VA QLITDLPGND DLKRHLEDLRDHLLMLEEQA+RMSTWSRSLNKDWVNEQQHRMNQVVYILTMVTSAFMPAQFL+ VFGMNFKFMPELNWRYSYASFWVLVALLA +T+YKRHKWL
Sbjct: 636 AEEILHVVLGRISLRE-----PTLGRPSNFEREQVSVFLVGDHTVLFIEPTRSKVSDQISNRIYYAGSKLRLNNARYLVYSLMDSIVDDVFPIMQQFQAWLVQLQEQLHSEDAGPSLDIVRAIQQISRDMHMITFYLRPMKVVATQLITDLPGNDADLKRHLEDLRDHLLMLEEQALRMSTWSRSLNKDWVNEQQHRMNQVVYILTMVTSAFMPAQFLTGVFGMNFKFMPELNWRYSYASFWVLVALLAFSSYTVYKRHKWL 892
BLAST of mRNA_P-canaliculata_contig9987.24102.1 vs. uniprot
Match: A0A835YKG6_9STRA (Cora-like Mg2+ transporter protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKG6_9STRA) HSP 1 Score: 278 bits (712), Expect = 2.510e-76 Identity = 145/325 (44.62%), Postives = 207/325 (63.69%), Query Frame = 2 Query: 734 DDILHVVLDRISFKHYTADNPTVAGASSFEREQVSVFLVGDHTVLFIEPKSSAVSDRISNRIIYAGSKLRLNNARYLVYSLMDSIVDDV---------------------------------------------------------------FPIMQHFQKWLVELQGKLHSSDDCPSLEVVRAIQQISRDMHMITYYLRPMKMVAIQLITDLP-GNDMDLKRHLEDLRDHLLMLEEQAMRMSTWSRSLNKDWVNEQQHRMNQVVYILTMVTSAFMPAQFLSSVFGMNFKFMPELNWRYSYASFWVLVALLALFIFTLYKRHKWL 1516
+ ++HV+L ++ P+ S+ ++EQ+S+FL+ D TV++IE + + V+D I+ RI+YAGSK+RLNNAR+LVY+++D+IVD+V FPI+QHF +WLV+LQGK+ S + P L VV+AIQQI+RDM+M+ +YLRPMK QL+ +LP +D +L+RHLEDL DH+++LEEQA RM+ WSRSLN D++NEQ HRMN V+Y+LTMVT+AF+P QFL+ VFGMNFK+MPEL+W+YSY FW L+ LA F+F Y++++WL
Sbjct: 427 EGVVHVLLCKVMLHE-----PSQGWPSNIQKEQISIFLIDDTTVVYIEKRPTGVTDTIAGRIMYAGSKIRLNNARFLVYTIVDAIVDEVRAPNRWRRVLHRSIRVPPVSRNCCSSAHNRATSFDVGRRSRGARLRAMSILQRGTRRASKELMFPIVQHFHRWLVQLQGKVQSEKETP-LAVVKAIQQINRDMNMLQFYLRPMKAAVAQLVAELPDADDKNLRRHLEDLLDHVVVLEEQAYRMTAWSRSLNDDFMNEQTHRMNNVMYLLTMVTTAFLPGQFLTGVFGMNFKYMPELDWKYSYLIFWALIFALATFVFNFYRKNRWL 745
BLAST of mRNA_P-canaliculata_contig9987.24102.1 vs. uniprot
Match: A0A835Z9I1_9STRA (Cora-like Mg2+ transporter protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9I1_9STRA) HSP 1 Score: 246 bits (629), Expect = 3.190e-63 Identity = 128/251 (51.00%), Postives = 179/251 (71.31%), Query Frame = 2 Query: 734 DDILHVVLDRISFKHYTADNPTVAGASSFEREQVSVFLVGDHTVLFIEPKSSAVSDRISNRIIYAGSKLRLNNARYLVYSLMDSIVDDVFPIMQHFQKWLVELQGKLHSSDDCPSLEVVRAIQQISRDMHMITYYLRPMKMVAIQLITDLPGNDM--------DLKRHLEDLRDHLLMLEEQAMRMSTWSRSLNKDWVNEQQHRMNQVVYILTMVTSAFMPAQFLSSVFGMNFKFMPELNWRYSYASFWVL 1462
+ ++HV+L +++ +A +P S REQVS+FLV D TVL++E SS + + RI Y GSK+RLN +LVY+L+D++VD +FPI+QHF LV LQ + +D P L VV+ IQQ++RDM+ + +YLRP++ QL+ DLP D DL+RHL DL DH+++LEEQAMRM++WS SLN+D++NEQ H+MN+V+ +LTMVT+A +P QFL+ VFGMNF++MPELNW YSYA FWVL
Sbjct: 415 EGVVHVLLAKVTLADTSAGHP-----SRILREQVSIFLVRD-TVLYLERTSSGLKSALEERITYPGSKVRLNGPFFLVYALVDALVDGMFPIVQHFHTQLVGLQESIQGEEDTP-LTVVKDIQQVNRDMNALQFYLRPLRPAVAQLMNDLPAFDAAADAAAREDLRRHLMDLLDHVVVLEEQAMRMASWSASLNEDYLNEQGHKMNKVMTVLTMVTTACLPGQFLAGVFGMNFRYMPELNWHYSYALFWVL 658
BLAST of mRNA_P-canaliculata_contig9987.24102.1 vs. uniprot
Match: A0A0D2VNK3_CAPO3 (Uncharacterized protein n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2VNK3_CAPO3) HSP 1 Score: 212 bits (539), Expect = 5.960e-53 Identity = 110/267 (41.20%), Postives = 175/267 (65.54%), Query Frame = 2 Query: 725 IASDDILHVVLDRISFKHYTADNPTVAGASSFEREQVSVFLV-GDHTVLFIEPKSSAVSDRISNRIIYAGSKLRLNNARYLVYSLMDSIVDDVFPIMQHFQKWLVELQGKLHSSDDCPSLEVVRAIQQISRDMHMITYYLRPMKMVAIQLITDLP-GND-MDLKRHLEDLRDHLLMLEEQAMRMSTWSRSLNKDWVNEQQHRMNQVVYILTMVTSAFMPAQFLSSVFGMNFKFMPELNWRYSYASFWVLVALLALFIFTLYKRHKWL 1516
I SD +H+V+ R++ K Y + + +Q+++ L+ D TV+ IE K +A + + RI YAGSK+RLNNAR+L+Y+++D IVDDVFP+++ F L +LQ + +L + +Q + R+++ + ++L + V +L+ +LP G D +D+++H+EDL+DH+ L+EQ M W++SLN D +NEQQ RMNQV+Y+LTMVT+ F+P QF++ V+GMNF+ +PEL WRYSY FW++V +L +KR WL
Sbjct: 608 INSDGTMHIVISRLTLKSYDSKDWL-----QLVTDQLNICLLHADSTVITIEKKPAATTHTLLQRISYAGSKVRLNNARFLIYAMVDGIVDDVFPVLKAFHYQLRQLQTLVLGRKQT-TLATAKELQHLHRELNNLVFWLHSLSSVINRLLEELPQGTDALDIRKHMEDLKDHVQTLQEQTNSMMQWAKSLNDDLLNEQQFRMNQVMYMLTMVTTTFVPLQFITGVYGMNFETLPELTWRYSYLVFWIIVLMLLTIALWFFKRRGWL 868
BLAST of mRNA_P-canaliculata_contig9987.24102.1 vs. uniprot
Match: I2CPD3_NANGC (Magnesium and cobalt transport protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CPD3_NANGC) HSP 1 Score: 183 bits (464), Expect = 8.130e-47 Identity = 94/242 (38.84%), Postives = 159/242 (65.70%), Query Frame = 2 Query: 800 VAGASSFEREQVSVFLVGDH-TVLFIEPKSSAVSDRISNRIIYAGSKLRLNNARYLVYSLMDSIVDDVFPIMQHFQKWLVELQGKLHSSDDCPSLEVVRAIQQISRDMHMITYYLRPMKMVAIQLITDLPGN--DMDLKRHLEDLRDHLLMLEEQAMRMSTWSRSLNKDWVNEQQHRMNQVVYILTMVTSAFMPAQFLSSVFGMNFKFMPELNWRYSYASFWVLVALLALFIFTLYKRHKWL 1516
V G E+EQ+++FL+ + TV+ ++P + + ++ +RI+YAGSKLRLN +L Y+L+D+IVD++FPI++ ++ L L + + SL+ + IQ + R+++++ +L + V +L +L + D DL++HL DL DH+ L+EQ M W++SLN +++NEQQ+RMNQV+Y+LTMVT+ +PAQFL+ VFGMNF++ P LN + + FWV+ + I +++ +WL
Sbjct: 142 VDGLPKIEKEQMTIFLLDKYKTVITLQPTENGIKKKLLSRIMYAGSKLRLNGPGFLTYALVDAIVDELFPILRLIRRKLKSLHADVTRGNKRISLKTIHLIQHLIREINLLLLWLSSLGTVVARLPAELLFHRPDYDLEKHLGDLVDHVAALKEQTHSMIGWAKSLNDEYLNEQQYRMNQVIYLLTMVTTLMLPAQFLTGVFGMNFEYFPLLNEPWGFPVFWVMTSSAIGLILYIFRAKRWL 383
BLAST of mRNA_P-canaliculata_contig9987.24102.1 vs. uniprot
Match: A0A4D9CQ61_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CQ61_9STRA) HSP 1 Score: 183 bits (465), Expect = 5.150e-44 Identity = 94/242 (38.84%), Postives = 160/242 (66.12%), Query Frame = 2 Query: 800 VAGASSFEREQVSVFLVGDH-TVLFIEPKSSAVSDRISNRIIYAGSKLRLNNARYLVYSLMDSIVDDVFPIMQHFQKWLVELQGKLHSSDDCPSLEVVRAIQQISRDMHMITYYLRPMKMVAIQLITDLPGN--DMDLKRHLEDLRDHLLMLEEQAMRMSTWSRSLNKDWVNEQQHRMNQVVYILTMVTSAFMPAQFLSSVFGMNFKFMPELNWRYSYASFWVLVALLALFIFTLYKRHKWL 1516
V G E+EQ+++FL+ + TV+ ++P + ++ ++ +RI+YAGSKLRLN +L Y+L+D+IVD++FPI++ ++ L L + + SL+ + IQ + R+++++ +L + V +L +L + D DL++HL DL DH+ L+EQ M W++SLN +++NEQQ+RMNQV+Y+LTMVT+ +PAQFL+ VFGMNF++ P LN + + FWV+ + I +++ +WL
Sbjct: 549 VDGLPKIEKEQMTIFLLDKYKTVITLQPTENGITKKLLSRIMYAGSKLRLNGPGFLTYALVDAIVDELFPILRLIRRKLKSLHADVTRGNKRISLKTIHLIQHLIREINLLLLWLSSLGTVVARLPAELLFHRPDYDLEKHLGDLVDHVAALKEQTHSMIGWAKSLNDEYLNEQQYRMNQVIYLLTMVTTLMLPAQFLTGVFGMNFEYFPLLNEPWGFPVFWVMTSSAIGLILYIFRAKRWL 790
BLAST of mRNA_P-canaliculata_contig9987.24102.1 vs. uniprot
Match: A0A7S4C8W9_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4C8W9_9EUGL) HSP 1 Score: 138 bits (348), Expect = 1.440e-31 Identity = 79/240 (32.92%), Postives = 135/240 (56.25%), Query Frame = 2 Query: 821 EREQVSVFLVGDHTVLFIEPKSSAVSDRISNRIIYAGSKLRLNNARYLVYSLMDSIVDDVFPIMQHFQKWLVELQGKLHS-------SDDCPSLEVVRAIQQISRDMHMITYYLRPMKMVAIQLITDLPGNDM-DLKRHLEDLRDHLLMLEEQAMRMSTWSRSLNKDWVNEQQHRMNQVVYILTMVTSAFMPAQFLSSVFGMNFKFMPELNWRYSYASFWVLVALLALFIFTLYKRHKWL 1516
E QVS+ L + F + A+ +N I GS+LR ++ +L + +MD VD +FPIM F+ L E Q L + + ++ ++R +Q S++M+ + + LRP+ + L N + +L+ + +DLRDH+ + + M TW+R+L D+ QQ MN+ +Y+LT++T+ F+PA FL+ +FGMNF++MP LNW Y + +FW ++ + + I L K+ WL
Sbjct: 140 EMNQVSLVLSDGVLLSFFNAPTKAIEQCKAN-IAAPGSRLRTSSCLWLAHMIMDKEVDHLFPIMNKFRMQLEECQRVLEDRRPSGTGNPNASNVAILRVLQCTSQEMNNLVFVLRPLASAVMALTEYARYNGLTELQWYFDDLRDHVSTILDYVASMQTWARNLKDDYSYIQQDNMNRTMYVLTLITALFVPANFLTGLFGMNFEYMPWLNWEYGFWAFWGVIVCVNVVIVYLIKKLSWL 378
BLAST of mRNA_P-canaliculata_contig9987.24102.1 vs. uniprot
Match: A0A6N4X317_9BACT (Magnesium transport protein CorA n=2 Tax=Lentimonas TaxID=417293 RepID=A0A6N4X317_9BACT) HSP 1 Score: 134 bits (337), Expect = 5.720e-30 Identity = 82/255 (32.16%), Postives = 140/255 (54.90%), Query Frame = 2 Query: 755 LDRISFKHYTADNPTVAGASSFEREQVSVFLVGDHTVLFIEPKSSAVSDRISNRIIYAGSKLRLNNARYLVYSLMDSIVDDVFPIMQHFQKWLVELQGKLHSSDDCPSLEVVRAIQQISRDMHMITYYLRPMKMVAIQLI-TDLPGNDMDLKRHLEDLRDHLLMLEEQAMRMSTWSRSLNKDWVNEQQHRMNQVVYILTMVTSAFMPAQFLSSVFGMNFKFMPELNWRYSYASFWVLVALLALFIFTLYKRHKWL 1516
L ++ +HY N + EQVS+FL D T+L + + V D I R++ S+ R N A YL Y+L+DSIVD +FPI + + L EL+ ++ + P+ E +++ + D+ L ++ V L T+ P DLK L D++DH + L + + SL + ++MN+++ +LT+++S F+P FL+ V+GMNFK++PELNW+YSYA+FW++ + + ++R W+
Sbjct: 151 LQIVARQHYHKQN-------ELKNEQVSIFLFKD-TLLSFQEHAGDVFDPIRKRLMNHDSRFRSNQADYLCYALLDSIVDHLFPIQESYTNDLEELEDRIL---EAPTAECQQSLFSMKHDLSRQRRALWALREVIDGLYRTESPLIGHDLKPFLRDVQDHTIQLIDLISNARDTAASLGDLYQTSVSNKMNEIMKVLTLMSSFFIPMTFLAGVYGMNFKYIPELNWKYSYATFWLICLISCTSLLIFFRRKGWI 394
BLAST of mRNA_P-canaliculata_contig9987.24102.1 vs. uniprot
Match: A0A2E2B7M3_9BACT (Magnesium transport protein CorA n=1 Tax=Phycisphaeraceae bacterium TaxID=2026777 RepID=A0A2E2B7M3_9BACT) HSP 1 Score: 133 bits (335), Expect = 1.250e-29 Identity = 80/233 (34.33%), Postives = 138/233 (59.23%), Query Frame = 2 Query: 827 EQVSVFLVGDHTVLFIEPKSSAVSDRISNRIIYAGSKLRLNNARYLVYSLMDSIVDDVFPIMQHFQKWLVELQGKLHSSDDCPSLEVVRAIQQISRDMHMITYYLRPMKMVAIQLITDLPGNDM--DLKR-HLEDLRDHLLMLEEQAMRMSTWSRSLNKDWVNEQQHRMNQVVYILTMVTSAFMPAQFLSSVFGMNFKFMPELNWRYSYASFWVLVALLALFIFTLYKRHKWL 1516
EQVS+FL G +TVL + K + D I RI GS+LR ++ +LVY+L+D+++D FPI++HF + L +L+ K+ D +V++ I +I R++ M+ ++ PM+ V QL D +++ D+ R +L D+ DH + + E + L + +RMN+V+ +LT+ S F+P F++ V+GMNF +PEL+++Y Y FW ++ + + + L+K KWL
Sbjct: 180 EQVSLFL-GHNTVLTFQQKPGDIWDPIRQRIDTEGSRLRNQDSSFLVYALLDAVIDHCFPILEHFSQRLEDLELKILEEKD---RDVIKKIYRIKRELIMVNRHIWPMREVLRQLQHDEVTSELMSDMSRTYLRDVYDHAVQIIEIVETYRDLASGLADMHMTVVSNRMNEVMKVLTIFASIFIPITFIAGVYGMNFDHIPELHYKYGYYIFWAVILTVTVGMLGLFKIKKWL 408 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9987.24102.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig9987.24102.1 >prot_P-canaliculata_contig9987.24102.1 ID=prot_P-canaliculata_contig9987.24102.1|Name=mRNA_P-canaliculata_contig9987.24102.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=181bp MDSIVDDVFPIMQHFQKWLVELQGKLHSSDDCPSLEVVRAIQQISRDMHMback to top mRNA from alignment at P-canaliculata_contig9987:95..10697+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig9987.24102.1 ID=mRNA_P-canaliculata_contig9987.24102.1|Name=mRNA_P-canaliculata_contig9987.24102.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=10603bp|location=Sequence derived from alignment at P-canaliculata_contig9987:95..10697+ (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig9987:95..10697+ >mRNA_P-canaliculata_contig9987.24102.1 ID=mRNA_P-canaliculata_contig9987.24102.1|Name=mRNA_P-canaliculata_contig9987.24102.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1086bp|location=Sequence derived from alignment at P-canaliculata_contig9987:95..10697+ (Pelvetia canaliculata dioecious)back to top |