mRNA_P-canaliculata_contig99818.24099.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig99818.24099.1
Unique NamemRNA_P-canaliculata_contig99818.24099.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig99818.24099.1 vs. uniprot
Match: A0A6P0ZIN1_9CYAN (Uncharacterized protein n=1 Tax=Sphaerospermopsis sp. SIO1G2 TaxID=2607815 RepID=A0A6P0ZIN1_9CYAN)

HSP 1 Score: 77.8 bits (190), Expect = 2.640e-15
Identity = 35/75 (46.67%), Postives = 50/75 (66.67%), Query Frame = 1
Query:    1 VPTEVDSSPAQGNGGGGQTIYHRWESCFHPTGMKFTGSSN---PSNAVLADAGSWDRVFSERKAIKMVKLVHRES 216
            VP E++  P  GNGGG + +++R +   HPTG  + G++    P+NA LA A SWDRV+ ERK IK+ +L+ RES
Sbjct:  258 VPVEIERKPEAGNGGGQELLFNRTQWSIHPTGFAYVGAATGGGPTNATLAAAASWDRVYPERKQIKIARLITRES 332          
BLAST of mRNA_P-canaliculata_contig99818.24099.1 vs. uniprot
Match: A0A516LEJ2_9VIRU (Putative major capsid protein n=1 Tax=Prokaryotic dsDNA virus sp. TaxID=2591644 RepID=A0A516LEJ2_9VIRU)

HSP 1 Score: 77.8 bits (190), Expect = 3.240e-15
Identity = 39/78 (50.00%), Postives = 49/78 (62.82%), Query Frame = 1
Query:    1 VPTEVDSSPAQGNGGGGQTIYHRWESCFHPTGMKFTGSSN---PSNAV----LADAGSWDRVFSERKAIKMVKLVHRE 213
            VPTE    P  GNG G + +Y+RWE C HPTG  F  +++   PSNA     LA A SW RV+SERK IK+ +L+ RE
Sbjct:  285 VPTETKRDPDSGNGAGSEILYNRWEWCIHPTGHAFAVAASGGGPSNAATAGNLAHADSWKRVYSERKQIKIARLITRE 362          
BLAST of mRNA_P-canaliculata_contig99818.24099.1 vs. uniprot
Match: A0A7G5B066_9CAUD (Major capsid protein n=3 Tax=unclassified Queuovirinae TaxID=2853007 RepID=A0A7G5B066_9CAUD)

HSP 1 Score: 77.4 bits (189), Expect = 4.430e-15
Identity = 38/78 (48.72%), Postives = 48/78 (61.54%), Query Frame = 1
Query:    1 VPTEVDSSPAQGNGGGGQTIYHRWESCFHPTGMKFTGSSN---PSNAV----LADAGSWDRVFSERKAIKMVKLVHRE 213
            VPTE    P  GNGGG + +Y+RWE C HP G  F  +++   PSNA     LA A SW R +SERK IK+ +L+ RE
Sbjct:  284 VPTETKRDPDSGNGGGSEILYNRWEWCLHPVGHAFIAAASGGGPSNAATSGNLAHADSWKRAYSERKQIKIARLITRE 361          
BLAST of mRNA_P-canaliculata_contig99818.24099.1 vs. uniprot
Match: A0A2H4GY17_9CAUD (Major head protein n=6 Tax=Nipunavirus TaxID=1982239 RepID=A0A2H4GY17_9CAUD)

HSP 1 Score: 73.2 bits (178), Expect = 1.400e-13
Identity = 39/78 (50.00%), Postives = 48/78 (61.54%), Query Frame = 1
Query:    1 VPTEVDSSPAQGNGGGGQTIYHRWESCFHPTGMKFTGS---SNPSNAV----LADAGSWDRVFSERKAIKMVKLVHRE 213
            VPTEVD  PA GNGGG   +++R E   HP G  + G+     PSNA     LA A SW RVFSERK I++ +L+ RE
Sbjct:  266 VPTEVDRKPAAGNGGGQDILFNRTEWIIHPVGHAYAGTPPNGGPSNASTTNNLAHADSWKRVFSERKQIRIARLITRE 343          
BLAST of mRNA_P-canaliculata_contig99818.24099.1 vs. uniprot
Match: A0A7G3PH87_9CAUD (Putative major capsid protein n=1 Tax=Sphingomonas phage vB_StuS_MMDA13 TaxID=2686378 RepID=A0A7G3PH87_9CAUD)

HSP 1 Score: 72.0 bits (175), Expect = 3.840e-13
Identity = 39/79 (49.37%), Postives = 48/79 (60.76%), Query Frame = 1
Query:    1 VPTEVDSSPAQGNGGGGQTIYHRWESCFHPTGMKFTGSSN----PSNAV----LADAGSWDRVFSERKAIKMVKLVHRE 213
            VPTE D  P  GNGGG   +Y+R E   HP G  + G +     PSNA     LA+AGSW RVF+ERK I++ +LV RE
Sbjct:  275 VPTETDRKPETGNGGGQDILYNRVEWTMHPVGHAYIGGTTAKGGPSNANTSGNLANAGSWRRVFNERKQIRIARLVTRE 353          
BLAST of mRNA_P-canaliculata_contig99818.24099.1 vs. uniprot
Match: A0A2E0NP38_9GAMM (Uncharacterized protein n=2 Tax=Proteobacteria TaxID=1224 RepID=A0A2E0NP38_9GAMM)

HSP 1 Score: 71.2 bits (173), Expect = 7.020e-13
Identity = 39/78 (50.00%), Postives = 49/78 (62.82%), Query Frame = 1
Query:    1 VPTEVDSSPAQGNGGGGQTIYHRWESCFHPTGMKFTGS---SNPSNAV----LADAGSWDRVFSERKAIKMVKLVHRE 213
            VPTEV+  P  GNGGG + +Y+R E    P G  + G+     PSNA     LA+AGSW RVFSERK I++ +LV RE
Sbjct:  267 VPTEVERKPDAGNGGGEEILYNRVEWVIAPAGYAYIGTPPKGGPSNANTTNNLANAGSWSRVFSERKQIRIARLVTRE 344          
BLAST of mRNA_P-canaliculata_contig99818.24099.1 vs. uniprot
Match: A0A1H2ENG7_9PROT (Uncharacterized protein n=2 Tax=Nitrosomonas ureae TaxID=44577 RepID=A0A1H2ENG7_9PROT)

HSP 1 Score: 70.5 bits (171), Expect = 1.310e-12
Identity = 35/79 (44.30%), Postives = 46/79 (58.23%), Query Frame = 1
Query:    1 VPTEVDSSPAQGNGGGGQTIYHRWESCFHPTGMKFTG---SSNPSNAV----LADAGSWDRVFSERKAIKMVKLVHRES 216
            VP E D   A GNG G +T++HRWE   HP G  + G   S  P N      LA+AGSW RV+ ERK + + +L+ RE+
Sbjct:  263 VPLESDRVAAAGNGAGMETLHHRWEWIIHPAGCAYVGTAPSGGPGNTAASNDLANAGSWSRVWPERKQVHIARLITREA 341          
BLAST of mRNA_P-canaliculata_contig99818.24099.1 vs. uniprot
Match: A0A7D2LI04_9CAUD (Major head protein n=1 Tax=Stenotrophomonas phage vB_SmaS_BUCT548 TaxID=2712941 RepID=A0A7D2LI04_9CAUD)

HSP 1 Score: 70.1 bits (170), Expect = 1.780e-12
Identity = 35/75 (46.67%), Postives = 44/75 (58.67%), Query Frame = 1
Query:    1 VPTEVDSSPAQGNGGGGQTIYHRWESCFHPTGMKFTGS----SNPSNAVLADAGSWDRVFSERKAIKMVKLVHRE 213
            VP  V+   + G+GGG + +Y+R E C  P G  + GS      P NAV+  A SW RVF ERK IKMV+ V RE
Sbjct:  263 VPVAVERDESAGHGGGQEILYNRVEWCMAPAGYAYVGSLAEKGGPKNAVIKQANSWQRVFPERKQIKMVRYVTRE 337          
BLAST of mRNA_P-canaliculata_contig99818.24099.1 vs. uniprot
Match: A0A6J5PIK2_9CAUD (Uncharacterized protein n=1 Tax=uncultured Caudovirales phage TaxID=2100421 RepID=A0A6J5PIK2_9CAUD)

HSP 1 Score: 68.6 bits (166), Expect = 6.460e-12
Identity = 34/74 (45.95%), Postives = 47/74 (63.51%), Query Frame = 1
Query:    1 VPTEVDSSPAQGNGGGGQTIYHRWESCFHPTGMKFTGS---SNPSNAVLADAGSWDRVFSERKAIKMVKLVHRE 213
            VPTE+   PA GNG G +T+++R E   HP+G ++  S     P+NA LA A +W RVF ERK I++ +L  RE
Sbjct:  265 VPTEIYRLPAAGNGAGMETLFNRVEWAIHPSGYQYVPSYTVGGPTNATLALAATWSRVFPERKQIRIARLKTRE 338          
BLAST of mRNA_P-canaliculata_contig99818.24099.1 vs. uniprot
Match: A0A516LHR7_9VIRU (Putative major capsid protein n=1 Tax=Prokaryotic dsDNA virus sp. TaxID=2591644 RepID=A0A516LHR7_9VIRU)

HSP 1 Score: 65.9 bits (159), Expect = 6.260e-11
Identity = 35/79 (44.30%), Postives = 45/79 (56.96%), Query Frame = 1
Query:    1 VPTEVDSSPAQGNGGGGQTIYHRWESCFHPTGMKFTGSS---NPSNAV----LADAGSWDRVFSERKAIKMVKLVHRES 216
            VP E       G+GGG   +  R + C HP G  + G+S    P+NA     LA+AGSW RVF ERK IK+ +L+ RES
Sbjct:  271 VPVETKREALAGDGGGQDILIDRVQWCLHPVGHAYVGTSPNGGPTNAATSNNLANAGSWQRVFPERKQIKIARLITRES 349          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig99818.24099.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A6P0ZIN1_9CYAN2.640e-1546.67Uncharacterized protein n=1 Tax=Sphaerospermopsis ... [more]
A0A516LEJ2_9VIRU3.240e-1550.00Putative major capsid protein n=1 Tax=Prokaryotic ... [more]
A0A7G5B066_9CAUD4.430e-1548.72Major capsid protein n=3 Tax=unclassified Queuovir... [more]
A0A2H4GY17_9CAUD1.400e-1350.00Major head protein n=6 Tax=Nipunavirus TaxID=19822... [more]
A0A7G3PH87_9CAUD3.840e-1349.37Putative major capsid protein n=1 Tax=Sphingomonas... [more]
A0A2E0NP38_9GAMM7.020e-1350.00Uncharacterized protein n=2 Tax=Proteobacteria Tax... [more]
A0A1H2ENG7_9PROT1.310e-1244.30Uncharacterized protein n=2 Tax=Nitrosomonas ureae... [more]
A0A7D2LI04_9CAUD1.780e-1246.67Major head protein n=1 Tax=Stenotrophomonas phage ... [more]
A0A6J5PIK2_9CAUD6.460e-1245.95Uncharacterized protein n=1 Tax=uncultured Caudovi... [more]
A0A516LHR7_9VIRU6.260e-1144.30Putative major capsid protein n=1 Tax=Prokaryotic ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig99818contigP-canaliculata_contig99818:820..1038 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViruses
Seed ortholog score74.7
Seed ortholog evalue2e-11
Seed eggNOG ortholog1538804.A0A088F6J6_9CAUD
EggNOG free text desc.viral capsid
EggNOG OGs4QFB4@10239,4QKUP@10699,4QSGK@28883
COG Functional cat.S
Best tax levelSiphoviridae
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size219
Cds size219
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817357.4213502-CDS-P-canaliculata_contig99818:819..10381622817357.4213502-CDS-P-canaliculata_contig99818:819..1038Pelvetia canaliculata dioeciousCDSP-canaliculata_contig99818 820..1038 -
1693495244.8990467-CDS-P-canaliculata_contig99818:819..10381693495244.8990467-CDS-P-canaliculata_contig99818:819..1038Pelvetia canaliculata dioeciousCDSP-canaliculata_contig99818 820..1038 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig99818.24099.1prot_P-canaliculata_contig99818.24099.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig99818 820..1038 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig99818.24099.1

>prot_P-canaliculata_contig99818.24099.1 ID=prot_P-canaliculata_contig99818.24099.1|Name=mRNA_P-canaliculata_contig99818.24099.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=73bp
VPTEVDSSPAQGNGGGGQTIYHRWESCFHPTGMKFTGSSNPSNAVLADAG
SWDRVFSERKAIKMVKLVHRES*
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mRNA from alignment at P-canaliculata_contig99818:820..1038-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig99818.24099.1 ID=mRNA_P-canaliculata_contig99818.24099.1|Name=mRNA_P-canaliculata_contig99818.24099.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=219bp|location=Sequence derived from alignment at P-canaliculata_contig99818:820..1038- (Pelvetia canaliculata dioecious)
GTACCTACGGAAGTGGATTCTTCACCGGCTCAAGGTAACGGCGGCGGCGG TCAAACTATTTATCATCGTTGGGAAAGTTGTTTTCATCCTACTGGAATGA AATTCACCGGCTCCTCGAACCCTAGCAACGCTGTTCTAGCTGACGCTGGT AGTTGGGATCGCGTTTTCAGTGAGCGTAAAGCGATCAAAATGGTAAAATT GGTTCACCGCGAATCGTAA
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Coding sequence (CDS) from alignment at P-canaliculata_contig99818:820..1038-

>mRNA_P-canaliculata_contig99818.24099.1 ID=mRNA_P-canaliculata_contig99818.24099.1|Name=mRNA_P-canaliculata_contig99818.24099.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=438bp|location=Sequence derived from alignment at P-canaliculata_contig99818:820..1038- (Pelvetia canaliculata dioecious)
GTACCTACGGAAGTGGATTCTTCACCGGCTCAAGGTAACGGCGGCGGCGG
TCAAACTATTTATCATCGTTGGGAAAGTTGTTTTCATCCTACTGGAATGA
AATTCACCGGCTCCTCGAACCCTAGCAACGCTGTTCTAGCTGACGCTGGT
AGTTGGGATCGCGTTTTCAGTGAGCGTAAAGCGATCAAAATGGTAAAATT
GGTTCACCGCGAATCGTAAGTACCTACGGAAGTGGATTCTTCACCGGCTC
AAGGTAACGGCGGCGGCGGTCAAACTATTTATCATCGTTGGGAAAGTTGT
TTTCATCCTACTGGAATGAAATTCACCGGCTCCTCGAACCCTAGCAACGC
TGTTCTAGCTGACGCTGGTAGTTGGGATCGCGTTTTCAGTGAGCGTAAAG
CGATCAAAATGGTAAAATTGGTTCACCGCGAATCGTAA
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