mRNA_P-canaliculata_contig99818.24099.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_P-canaliculata_contig99818.24099.1 vs. uniprot
Match: A0A6P0ZIN1_9CYAN (Uncharacterized protein n=1 Tax=Sphaerospermopsis sp. SIO1G2 TaxID=2607815 RepID=A0A6P0ZIN1_9CYAN) HSP 1 Score: 77.8 bits (190), Expect = 2.640e-15 Identity = 35/75 (46.67%), Postives = 50/75 (66.67%), Query Frame = 1 Query: 1 VPTEVDSSPAQGNGGGGQTIYHRWESCFHPTGMKFTGSSN---PSNAVLADAGSWDRVFSERKAIKMVKLVHRES 216 VP E++ P GNGGG + +++R + HPTG + G++ P+NA LA A SWDRV+ ERK IK+ +L+ RES Sbjct: 258 VPVEIERKPEAGNGGGQELLFNRTQWSIHPTGFAYVGAATGGGPTNATLAAAASWDRVYPERKQIKIARLITRES 332
BLAST of mRNA_P-canaliculata_contig99818.24099.1 vs. uniprot
Match: A0A516LEJ2_9VIRU (Putative major capsid protein n=1 Tax=Prokaryotic dsDNA virus sp. TaxID=2591644 RepID=A0A516LEJ2_9VIRU) HSP 1 Score: 77.8 bits (190), Expect = 3.240e-15 Identity = 39/78 (50.00%), Postives = 49/78 (62.82%), Query Frame = 1 Query: 1 VPTEVDSSPAQGNGGGGQTIYHRWESCFHPTGMKFTGSSN---PSNAV----LADAGSWDRVFSERKAIKMVKLVHRE 213 VPTE P GNG G + +Y+RWE C HPTG F +++ PSNA LA A SW RV+SERK IK+ +L+ RE Sbjct: 285 VPTETKRDPDSGNGAGSEILYNRWEWCIHPTGHAFAVAASGGGPSNAATAGNLAHADSWKRVYSERKQIKIARLITRE 362
BLAST of mRNA_P-canaliculata_contig99818.24099.1 vs. uniprot
Match: A0A7G5B066_9CAUD (Major capsid protein n=3 Tax=unclassified Queuovirinae TaxID=2853007 RepID=A0A7G5B066_9CAUD) HSP 1 Score: 77.4 bits (189), Expect = 4.430e-15 Identity = 38/78 (48.72%), Postives = 48/78 (61.54%), Query Frame = 1 Query: 1 VPTEVDSSPAQGNGGGGQTIYHRWESCFHPTGMKFTGSSN---PSNAV----LADAGSWDRVFSERKAIKMVKLVHRE 213 VPTE P GNGGG + +Y+RWE C HP G F +++ PSNA LA A SW R +SERK IK+ +L+ RE Sbjct: 284 VPTETKRDPDSGNGGGSEILYNRWEWCLHPVGHAFIAAASGGGPSNAATSGNLAHADSWKRAYSERKQIKIARLITRE 361
BLAST of mRNA_P-canaliculata_contig99818.24099.1 vs. uniprot
Match: A0A2H4GY17_9CAUD (Major head protein n=6 Tax=Nipunavirus TaxID=1982239 RepID=A0A2H4GY17_9CAUD) HSP 1 Score: 73.2 bits (178), Expect = 1.400e-13 Identity = 39/78 (50.00%), Postives = 48/78 (61.54%), Query Frame = 1 Query: 1 VPTEVDSSPAQGNGGGGQTIYHRWESCFHPTGMKFTGS---SNPSNAV----LADAGSWDRVFSERKAIKMVKLVHRE 213 VPTEVD PA GNGGG +++R E HP G + G+ PSNA LA A SW RVFSERK I++ +L+ RE Sbjct: 266 VPTEVDRKPAAGNGGGQDILFNRTEWIIHPVGHAYAGTPPNGGPSNASTTNNLAHADSWKRVFSERKQIRIARLITRE 343
BLAST of mRNA_P-canaliculata_contig99818.24099.1 vs. uniprot
Match: A0A7G3PH87_9CAUD (Putative major capsid protein n=1 Tax=Sphingomonas phage vB_StuS_MMDA13 TaxID=2686378 RepID=A0A7G3PH87_9CAUD) HSP 1 Score: 72.0 bits (175), Expect = 3.840e-13 Identity = 39/79 (49.37%), Postives = 48/79 (60.76%), Query Frame = 1 Query: 1 VPTEVDSSPAQGNGGGGQTIYHRWESCFHPTGMKFTGSSN----PSNAV----LADAGSWDRVFSERKAIKMVKLVHRE 213 VPTE D P GNGGG +Y+R E HP G + G + PSNA LA+AGSW RVF+ERK I++ +LV RE Sbjct: 275 VPTETDRKPETGNGGGQDILYNRVEWTMHPVGHAYIGGTTAKGGPSNANTSGNLANAGSWRRVFNERKQIRIARLVTRE 353
BLAST of mRNA_P-canaliculata_contig99818.24099.1 vs. uniprot
Match: A0A2E0NP38_9GAMM (Uncharacterized protein n=2 Tax=Proteobacteria TaxID=1224 RepID=A0A2E0NP38_9GAMM) HSP 1 Score: 71.2 bits (173), Expect = 7.020e-13 Identity = 39/78 (50.00%), Postives = 49/78 (62.82%), Query Frame = 1 Query: 1 VPTEVDSSPAQGNGGGGQTIYHRWESCFHPTGMKFTGS---SNPSNAV----LADAGSWDRVFSERKAIKMVKLVHRE 213 VPTEV+ P GNGGG + +Y+R E P G + G+ PSNA LA+AGSW RVFSERK I++ +LV RE Sbjct: 267 VPTEVERKPDAGNGGGEEILYNRVEWVIAPAGYAYIGTPPKGGPSNANTTNNLANAGSWSRVFSERKQIRIARLVTRE 344
BLAST of mRNA_P-canaliculata_contig99818.24099.1 vs. uniprot
Match: A0A1H2ENG7_9PROT (Uncharacterized protein n=2 Tax=Nitrosomonas ureae TaxID=44577 RepID=A0A1H2ENG7_9PROT) HSP 1 Score: 70.5 bits (171), Expect = 1.310e-12 Identity = 35/79 (44.30%), Postives = 46/79 (58.23%), Query Frame = 1 Query: 1 VPTEVDSSPAQGNGGGGQTIYHRWESCFHPTGMKFTG---SSNPSNAV----LADAGSWDRVFSERKAIKMVKLVHRES 216 VP E D A GNG G +T++HRWE HP G + G S P N LA+AGSW RV+ ERK + + +L+ RE+ Sbjct: 263 VPLESDRVAAAGNGAGMETLHHRWEWIIHPAGCAYVGTAPSGGPGNTAASNDLANAGSWSRVWPERKQVHIARLITREA 341
BLAST of mRNA_P-canaliculata_contig99818.24099.1 vs. uniprot
Match: A0A7D2LI04_9CAUD (Major head protein n=1 Tax=Stenotrophomonas phage vB_SmaS_BUCT548 TaxID=2712941 RepID=A0A7D2LI04_9CAUD) HSP 1 Score: 70.1 bits (170), Expect = 1.780e-12 Identity = 35/75 (46.67%), Postives = 44/75 (58.67%), Query Frame = 1 Query: 1 VPTEVDSSPAQGNGGGGQTIYHRWESCFHPTGMKFTGS----SNPSNAVLADAGSWDRVFSERKAIKMVKLVHRE 213 VP V+ + G+GGG + +Y+R E C P G + GS P NAV+ A SW RVF ERK IKMV+ V RE Sbjct: 263 VPVAVERDESAGHGGGQEILYNRVEWCMAPAGYAYVGSLAEKGGPKNAVIKQANSWQRVFPERKQIKMVRYVTRE 337
BLAST of mRNA_P-canaliculata_contig99818.24099.1 vs. uniprot
Match: A0A6J5PIK2_9CAUD (Uncharacterized protein n=1 Tax=uncultured Caudovirales phage TaxID=2100421 RepID=A0A6J5PIK2_9CAUD) HSP 1 Score: 68.6 bits (166), Expect = 6.460e-12 Identity = 34/74 (45.95%), Postives = 47/74 (63.51%), Query Frame = 1 Query: 1 VPTEVDSSPAQGNGGGGQTIYHRWESCFHPTGMKFTGS---SNPSNAVLADAGSWDRVFSERKAIKMVKLVHRE 213 VPTE+ PA GNG G +T+++R E HP+G ++ S P+NA LA A +W RVF ERK I++ +L RE Sbjct: 265 VPTEIYRLPAAGNGAGMETLFNRVEWAIHPSGYQYVPSYTVGGPTNATLALAATWSRVFPERKQIRIARLKTRE 338
BLAST of mRNA_P-canaliculata_contig99818.24099.1 vs. uniprot
Match: A0A516LHR7_9VIRU (Putative major capsid protein n=1 Tax=Prokaryotic dsDNA virus sp. TaxID=2591644 RepID=A0A516LHR7_9VIRU) HSP 1 Score: 65.9 bits (159), Expect = 6.260e-11 Identity = 35/79 (44.30%), Postives = 45/79 (56.96%), Query Frame = 1 Query: 1 VPTEVDSSPAQGNGGGGQTIYHRWESCFHPTGMKFTGSS---NPSNAV----LADAGSWDRVFSERKAIKMVKLVHRES 216 VP E G+GGG + R + C HP G + G+S P+NA LA+AGSW RVF ERK IK+ +L+ RES Sbjct: 271 VPVETKREALAGDGGGQDILIDRVQWCLHPVGHAYVGTSPNGGPTNAATSNNLANAGSWQRVFPERKQIKIARLITRES 349 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig99818.24099.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 15 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig99818.24099.1 >prot_P-canaliculata_contig99818.24099.1 ID=prot_P-canaliculata_contig99818.24099.1|Name=mRNA_P-canaliculata_contig99818.24099.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=73bp VPTEVDSSPAQGNGGGGQTIYHRWESCFHPTGMKFTGSSNPSNAVLADAGback to top mRNA from alignment at P-canaliculata_contig99818:820..1038- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig99818.24099.1 ID=mRNA_P-canaliculata_contig99818.24099.1|Name=mRNA_P-canaliculata_contig99818.24099.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=219bp|location=Sequence derived from alignment at P-canaliculata_contig99818:820..1038- (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig99818:820..1038- >mRNA_P-canaliculata_contig99818.24099.1 ID=mRNA_P-canaliculata_contig99818.24099.1|Name=mRNA_P-canaliculata_contig99818.24099.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=438bp|location=Sequence derived from alignment at P-canaliculata_contig99818:820..1038- (Pelvetia canaliculata dioecious)back to top |