Homology
BLAST of mRNA_P-canaliculata_contig99818.24098.1 vs. uniprot
Match:
A0A423S3E3_9BURK (Uncharacterized protein n=1 Tax=Pusillimonas sp. NJUB218 TaxID=2023230 RepID=A0A423S3E3_9BURK)
HSP 1 Score: 52.8 bits (125), Expect = 2.460e-6
Identity = 34/75 (45.33%), Postives = 48/75 (64.00%), Query Frame = 1
Query: 1 MALTVEDGSGTDTSVNSYVSVTEFTEFLTNRNLSVTAGSE---EALILRATDIIEQQN-YKGNKTTTTQALSFPR 213
MAL VEDG+G++ S SY+SV + T + NL T GSE EA + RAT ++ + YKG + T +QAL++PR
Sbjct: 1 MALIVEDGTGSNPSAESYISVADCTTYAAAHNLVFT-GSESEQEARLRRATQYLDAEYAYKGEQLTASQALAWPR 74
BLAST of mRNA_P-canaliculata_contig99818.24098.1 vs. uniprot
Match:
A0A5H2QAA3_9CAUD (Structural protein n=1 Tax=Achromobacter phage vB_Ade_ART TaxID=2292880 RepID=A0A5H2QAA3_9CAUD)
HSP 1 Score: 50.8 bits (120), Expect = 1.720e-5
Identity = 35/99 (35.35%), Postives = 60/99 (60.61%), Query Frame = 1
Query: 1 MALTVEDGSGTDTSVNSYVSVTEFTEFLTNRNLSVTAGSE--EALILRATDIIEQ--QNYKGNKTTTTQALSFPRSNIY-DKENISYDENSIPKSIKIS 282
MAL VEDG+G +T+ NSY+ V + +R L ++ E I+ A D +E + +KG + T+TQALS+PR+++ D E ++ ++ IP +K++
Sbjct: 1 MALIVEDGTGKETA-NSYIDVQFARAYAQSRGLPISDDDAVVEGWIVMACDYVESFAEQFKGKRKTSTQALSWPRTDVVIDGE--AFPDDKIPTQLKLA 96
BLAST of mRNA_P-canaliculata_contig99818.24098.1 vs. uniprot
Match:
UPI000E20F2BA (hypothetical protein n=1 Tax=Escherichia coli TaxID=562 RepID=UPI000E20F2BA)
HSP 1 Score: 49.7 bits (117), Expect = 4.450e-5
Identity = 29/93 (31.18%), Postives = 54/93 (58.06%), Query Frame = 1
Query: 1 MALTVEDGSGTDTSVNSYVSVTEFTEF--LTNRNLSVTAGSEEALILRATDIIEQQ---NYKGNKTTTTQALSFPRSNIYDKENISYDENSIP 264
MAL +E GS + N+++S+ +F + L + T A ++R+ + +E + + G+K + QALS+PR N+YD+++ SYD + +P
Sbjct: 1 MALIIETGSVVP-NANTFISLDDFKAYCILVGYLIETTDDEVSAALVRSANYLENRYRTRWVGSKASRDQALSWPRKNVYDEDDYSYDSDVVP 92
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig99818.24098.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 3
0 1 Expect = 2.46e-6 / Id = 45.33 Expect = 1.72e-5 / Id = 35.35 Expect = 4.45e-5 / Id = 31.18 Sequence A0A423S3E3_9BURK A0A5H2QAA3_9CAUD UPI000E20F2BA back to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Viruses Seed ortholog score 63.2 Seed ortholog evalue 8.4e-08 Seed eggNOG ortholog 1476390.A0A060RF73_9CAUD EggNOG OGs 4QBSW@10239,4QN72@10699,4QQDX@28883,4QVFT@35237 Best tax level Siphoviridae Best eggNOG OG NA|NA|NA Hectar predicted targeting category other localisation Exons 1 Model size 309 Cds size 309 Stop 0 Start 1
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622817357.3787212-CDS-P-canaliculata_contig99818:78..387 1622817357.3787212-CDS-P-canaliculata_contig99818:78..387 Pelvetia canaliculata dioecious CDS P-canaliculata_contig99818 79..387 - 1693495244.8869982-CDS-P-canaliculata_contig99818:78..387 1693495244.8869982-CDS-P-canaliculata_contig99818:78..387 Pelvetia canaliculata dioecious CDS P-canaliculata_contig99818 79..387 -
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig99818.24098.1
>prot_P-canaliculata_contig99818.24098.1 ID=prot_P-canaliculata_contig99818.24098.1|Name=mRNA_P-canaliculata_contig99818.24098.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=103bp
MALTVEDGSGTDTSVNSYVSVTEFTEFLTNRNLSVTAGSEEALILRATDI back to top mRNA from alignment at P-canaliculata_contig99818:79..387-
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig99818.24098.1 ID=mRNA_P-canaliculata_contig99818.24098.1|Name=mRNA_P-canaliculata_contig99818.24098.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=309bp|location=Sequence derived from alignment at P-canaliculata_contig99818:79..387- (Pelvetia canaliculata dioecious)ATGGCACTGACAGTTGAAGACGGTAGTGGAACTGATACCTCAGTTAACAG
TTACGTAAGCGTAACTGAATTTACTGAGTTTCTTACTAACCGAAATTTGT
CAGTAACCGCTGGTTCGGAAGAAGCACTTATCTTACGCGCGACTGATATA
ATAGAACAACAAAATTATAAAGGAAATAAAACAACAACTACGCAGGCGTT
ATCGTTTCCTCGTTCTAATATATATGATAAAGAAAATATTTCATATGATG
AAAATAGTATTCCAAAATCAATAAAAATATCTGTAATATACCTTGCGTGG
TATATCAAT back to top Coding sequence (CDS) from alignment at P-canaliculata_contig99818:79..387-
>mRNA_P-canaliculata_contig99818.24098.1 ID=mRNA_P-canaliculata_contig99818.24098.1|Name=mRNA_P-canaliculata_contig99818.24098.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=618bp|location=Sequence derived from alignment at P-canaliculata_contig99818:79..387- (Pelvetia canaliculata dioecious) back to top