mRNA_P-canaliculata_contig9981.24097.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Homology

BLAST of mRNA_P-canaliculata_contig9981.24097.1 vs. uniprot
Match: B7XCR5_CHAMQ (Cytochrome c oxidase subunit 1 (Fragment) n=7 Tax=Chattonella marina TaxID=90936 RepID=B7XCR5_CHAMQ)

HSP 1 Score: 117 bits (294), Expect = 5.790e-27
Identity = 75/154 (48.70%), Postives = 97/154 (62.99%), Query Frame = 2

Query: 1811 HLFCFFGHPEVYILILPGSGIISHILGTFSEKPIFGYLGCLMR*FL*VFLDLSCGLITCLP*EWIFLLVLILLQLL*LLQFLRVLKFLVGLPPCGEVL----------LDLKH-LSFAIGF--LFTIGGLTGVVLANSGVDIALHDTYYVVAHF 2233
            HLF FFGHPEVYILILPG GI+SHI+ TFS+KP+FGYLG        V+  +S G++  +   W   +  + L +     F      ++ +P   ++           +DLK  + FA+GF  LFT+GG+TGVVLANSGVDIALHDTYYVVAHF
Sbjct:    1 HLFWFFGHPEVYILILPGFGIVSHIVSTFSKKPVFGYLGM-------VYAMMSIGVLGFI--VWAHHMYTVGLDIDTRAYFTAA-TMIIAVPTGIKIFGWIATMWGGSIDLKTPMLFAVGFIFLFTVGGVTGVVLANSGVDIALHDTYYVVAHF 144

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BLAST of mRNA_P-canaliculata_contig9981.24097.1 vs. uniprot
Match: D6MQM8_9PHAE (Cytochrome c oxidase subunit 1 (Fragment) n=28 Tax=Phaeophyceae TaxID=2870 RepID=D6MQM8_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 2.050e-26
Identity = 57/83 (68.67%), Postives = 67/83 (80.72%), Query Frame = 1

Query: 1900 RKAYFWLFGMLNAIIFIGVLGSIVWAHHMFTVGMDIFTRAYLAAAAMIIAVPTGIKIFSWTATMWGGSIRLKTPVICNRFFIY 2148
            RK  F   GM+ A++ IG+LG IVWAHHMFTVG+DI TRAY  AA MIIAVPTGIKIFSW ATMWGGSIRLKTP++ +  F++
Sbjct:   26 RKPVFGYLGMVYAMLSIGILGFIVWAHHMFTVGLDIDTRAYFTAATMIIAVPTGIKIFSWIATMWGGSIRLKTPMLFSIGFLF 108

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BLAST of mRNA_P-canaliculata_contig9981.24097.1 vs. uniprot
Match: A0A3P3YW96_PLABS (Cytochrome c oxidase subunit 1 n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3YW96_PLABS)

HSP 1 Score: 123 bits (309), Expect = 2.810e-26
Identity = 61/110 (55.45%), Postives = 77/110 (70.00%), Query Frame = 1

Query: 1822 FFWTPRSLHFNLAWFWYHKSHFRYFFRKAYFWLFGM-LNAIIFIGVLGSIVWAHHMFTVGMDIFTRAYLAAAAMIIAVPTGIKIFSWTATMWGGSIRLKTPVICNRFFIY 2148
            FF   RS++FN    WY+KS++R  F+K YFW F   L  ++ IG LG IVWAHHM+TVG+D+ TRAY  AA MIIAVPTGIK+FSW  TMWGG I+  T V+    F++
Sbjct:  229 FFGHSRSIYFNFTSIWYNKSNYRIIFKKTYFWFFRYGLCVMLCIGFLGFIVWAHHMYTVGLDVDTRAYFTAATMIIAVPTGIKVFSWLVTMWGGVIQFNTSVLFTFGFLF 338

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BLAST of mRNA_P-canaliculata_contig9981.24097.1 vs. uniprot
Match: A0A8J5WG91_ZIZPA (Uncharacterized protein n=1 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5WG91_ZIZPA)

HSP 1 Score: 117 bits (292), Expect = 5.000e-26
Identity = 76/155 (49.03%), Postives = 93/155 (60.00%), Query Frame = 2

Query: 1808 QHLFCFFGHPEVYILILPGSGIISHILGTFSEKPIFGYLGCLMR*FL*VFLDLSCGLITCLP*EWIFLLVLILLQLL*LLQFLRVLKFLVGLPP-----------CGEVLLDLKHLSFAIGF--LFTIGGLTGVVLANSGVDIALHDTYYVVAHF 2233
            QHLF FFGHPEVYILILPG GIISHI+ TFS KP+FGYLG        V+  +S G++  L   W   +  + L +     F      ++ +P             G  +     + FA+GF  LFTIGGLTG+VLANSG+DIALHDTYYVVAHF
Sbjct:   28 QHLFWFFGHPEVYILILPGFGIISHIVSTFSRKPVFGYLGM-------VYAMISIGVLGFL--VWAHHMFTVGLDVDTRAYFTAA-TMIIAVPTGIKIFSWIATMWGGSIQYKTPMLFAVGFIFLFTIGGLTGIVLANSGLDIALHDTYYVVAHF 172

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BLAST of mRNA_P-canaliculata_contig9981.24097.1 vs. uniprot
Match: Q31705_ARATH (Cytochrome c oxidase subunit 1 (Fragment) n=9 Tax=Spermatophyta TaxID=58024 RepID=Q31705_ARATH)

HSP 1 Score: 116 bits (290), Expect = 1.390e-25
Identity = 76/155 (49.03%), Postives = 93/155 (60.00%), Query Frame = 2

Query: 1808 QHLFCFFGHPEVYILILPGSGIISHILGTFSEKPIFGYLGCLMR*FL*VFLDLSCGLITCLP*EWIFLLVLILLQLL*LLQFLRVLKFLVGLPP-----------CGEVLLDLKHLSFAIGF--LFTIGGLTGVVLANSGVDIALHDTYYVVAHF 2233
            QHLF FFGHPEVYILILPG GIISHI+ TFS KP+FGYLG        V+  +S G++  L   W   +  + L +     F      ++ +P             G  +     + FA+GF  LFTIGGLTG+VLANSG+DIALHDTYYVVAHF
Sbjct:   29 QHLFWFFGHPEVYILILPGFGIISHIVSTFSGKPVFGYLGM-------VYAMISIGVLGFL--VWAHHMFTVGLDVDTRAYFTAA-TMIIAVPTGIKIFSWIATMWGGSIQYKTPMLFAVGFIFLFTIGGLTGIVLANSGLDIALHDTYYVVAHF 173

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BLAST of mRNA_P-canaliculata_contig9981.24097.1 vs. uniprot
Match: M1F017_SARFS (Cytochrome c oxidase subunit 1 (Fragment) n=4 Tax=Fucales TaxID=3009 RepID=M1F017_SARFS)

HSP 1 Score: 120 bits (300), Expect = 1.480e-25
Identity = 80/156 (51.28%), Postives = 94/156 (60.26%), Query Frame = 2

Query: 1808 QHLFCFFGHPEVYILILPGSGIISHILGTFSEKPIFGYLGCLMR*FL*VFLDLSCGLITCLP*EWIFLLVLILLQLL*LLQFLRVLKFLVGLPPC------------GEVLLDLKHLSFAIGFLF--TIGGLTGVVLANSGVDIALHDTYYVVAHF 2233
            QHLF FFGHPEVYILILPG GI+SHIL TFS KP+FGYLG        V+  LS G++  +   W   +  + L +     F      ++ +P              G + L    L F+IGFLF  TIGGLTGVVLANSGVDIALHDTYYVVAHF
Sbjct:  203 QHLFWFFGHPEVYILILPGFGIVSHILATFSRKPVFGYLGM-------VYAMLSIGILGFI--VWAHHMFTVGLDIDTRAYFTAA-TMIIAVPTGIKIFSWVATMWGGSIRLKTPML-FSIGFLFLFTIGGLTGVVLANSGVDIALHDTYYVVAHF 347

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BLAST of mRNA_P-canaliculata_contig9981.24097.1 vs. uniprot
Match: B4XPF8_9LAMI (Cytochrome c oxidase subunit 1 (Fragment) n=1 Tax=Sibthorpia peregrina TaxID=489688 RepID=B4XPF8_9LAMI)

HSP 1 Score: 118 bits (296), Expect = 2.830e-25
Identity = 77/155 (49.68%), Postives = 94/155 (60.65%), Query Frame = 2

Query: 1808 QHLFCFFGHPEVYILILPGSGIISHILGTFSEKPIFGYLGCLMR*FL*VFLDLSCGLITCLP*EWIFLLVLILLQLL*LLQFLRVLKFLVGLPP-----------CGEVLLDLKHLSFAIGF--LFTIGGLTGVVLANSGVDIALHDTYYVVAHF 2233
            QHLF FFGHPEVYILILPGSGIISHI+ TFS KP+FGYLG        V+  +S G++  L   W   +  + L +     F      ++ +P             G  +     + FA+GF  LFTIGGLTG+VLANSG+DIALHDTYYVVAHF
Sbjct:   75 QHLFWFFGHPEVYILILPGSGIISHIVSTFSGKPVFGYLGM-------VYAMISIGVLGFL--VWAHHMFTVGLDVDTRAYFTAA-TMIIAVPTGIKIFSWIATMWGGSIQYKTPMLFAVGFIFLFTIGGLTGIVLANSGLDIALHDTYYVVAHF 219

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BLAST of mRNA_P-canaliculata_contig9981.24097.1 vs. uniprot
Match: A0A0U4ZTN0_9PHAE (Cytochrome c oxidase subunit 1 (Fragment) n=8 Tax=Phaeophyceae TaxID=2870 RepID=A0A0U4ZTN0_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 2.880e-25
Identity = 80/156 (51.28%), Postives = 94/156 (60.26%), Query Frame = 2

Query: 1808 QHLFCFFGHPEVYILILPGSGIISHILGTFSEKPIFGYLGCLMR*FL*VFLDLSCGLITCLP*EWIFLLVLILLQLL*LLQFLRVLKFLVGLPPC------------GEVLLDLKHLSFAIGFLF--TIGGLTGVVLANSGVDIALHDTYYVVAHF 2233
            QHLF FFGHPEVYILILPG GI+SHIL TF+ KP+FGYLG        V+  LS G++  +   W   +  + L +     F      ++ +P              G + L    L FAIGFLF  TIGGLTGVVLANSGVDIALHDTYYVVAHF
Sbjct:  155 QHLFWFFGHPEVYILILPGFGIVSHILSTFARKPVFGYLGM-------VYAMLSIGILGFI--VWAHHMFTVGLDIDTRAYFTAA-TMIIAVPTGIKIFSWIATLWGGSIRLKTPML-FAIGFLFLFTIGGLTGVVLANSGVDIALHDTYYVVAHF 299

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BLAST of mRNA_P-canaliculata_contig9981.24097.1 vs. uniprot
Match: Q8W9F8_MUSAC (Cytochrome c oxidase subunit 1 (Fragment) n=2 Tax=Mesangiospermae TaxID=1437183 RepID=Q8W9F8_MUSAC)

HSP 1 Score: 119 bits (298), Expect = 3.420e-25
Identity = 77/155 (49.68%), Postives = 95/155 (61.29%), Query Frame = 2

Query: 1808 QHLFCFFGHPEVYILILPGSGIISHILGTFSEKPIFGYLGCLMR*FL*VFLDLSCGLITCLP*EWIFLLVLILLQLL*LLQFLRVLKFLVGLPP-----------CGEVLLDLKHLSFAIG--FLFTIGGLTGVVLANSGVDIALHDTYYVVAHF 2233
            QHLF FFGHPEVYILILPGSGIISHI+ TFS+KP+FGYLG        V+  +S G++  L   W   +  + L +     F      ++ +P             G  +     + FA+G  FLFTIGGLTG+VLANSG+DIALHDTYYVVAHF
Sbjct:  180 QHLFRFFGHPEVYILILPGSGIISHIVSTFSKKPVFGYLGM-------VYAMISIGVLGFL--VWAHHMFTVGLDVDTRAYFTAA-TMIIAVPTGIKIFSWIATMWGGSIQFKTPMLFAVGSIFLFTIGGLTGIVLANSGLDIALHDTYYVVAHF 324

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BLAST of mRNA_P-canaliculata_contig9981.24097.1 vs. uniprot
Match: B4XPK9_9LILI (Cytochrome c oxidase subunit 1 (Fragment) n=9 Tax=Mesangiospermae TaxID=1437183 RepID=B4XPK9_9LILI)

HSP 1 Score: 114 bits (286), Expect = 3.510e-25
Identity = 56/83 (67.47%), Postives = 66/83 (79.52%), Query Frame = 1

Query: 1900 RKAYFWLFGMLNAIIFIGVLGSIVWAHHMFTVGMDIFTRAYLAAAAMIIAVPTGIKIFSWTATMWGGSIRLKTPVICNRFFIY 2148
            RKA F   GM+ A+I IG+LG +VWAHHMFTVG+D+ TRAY  AA MIIAVPTGIKIFSW ATMWGGSI+ KTP++    FI+
Sbjct:  123 RKAVFGYLGMVYAMISIGLLGFLVWAHHMFTVGLDVDTRAYFTAATMIIAVPTGIKIFSWIATMWGGSIQFKTPMLFAFGFIF 205

The following BLAST results are available for this feature:

BLAST of mRNA_P-canaliculata_contig9981.24097.1 vs. uniprot

BLAST of mRNA_P-canaliculata_contig9981.24097.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25

ZOOM

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POSITION

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Match Name	E-value	Identity	Description
B7XCR5_CHAMQ	5.790e-27	48.70	Cytochrome c oxidase subunit 1 (Fragment) n=7 Tax=...	[more]
D6MQM8_9PHAE	2.050e-26	68.67	Cytochrome c oxidase subunit 1 (Fragment) n=28 Tax...	[more]
A0A3P3YW96_PLABS	2.810e-26	55.45	Cytochrome c oxidase subunit 1 n=1 Tax=Plasmodioph...	[more]
A0A8J5WG91_ZIZPA	5.000e-26	49.03	Uncharacterized protein n=1 Tax=Zizania palustris ...	[more]
Q31705_ARATH	1.390e-25	49.03	Cytochrome c oxidase subunit 1 (Fragment) n=9 Tax=...	[more]
M1F017_SARFS	1.480e-25	51.28	Cytochrome c oxidase subunit 1 (Fragment) n=4 Tax=...	[more]
B4XPF8_9LAMI	2.830e-25	49.68	Cytochrome c oxidase subunit 1 (Fragment) n=1 Tax=...	[more]
A0A0U4ZTN0_9PHAE	2.880e-25	51.28	Cytochrome c oxidase subunit 1 (Fragment) n=8 Tax=...	[more]
Q8W9F8_MUSAC	3.420e-25	49.68	Cytochrome c oxidase subunit 1 (Fragment) n=2 Tax=...	[more]
B4XPK9_9LILI	3.510e-25	67.47	Cytochrome c oxidase subunit 1 (Fragment) n=9 Tax=...	[more]

Pages

Properties


Property Name	Value
Taxonomic scope	Viridiplantae
Seed ortholog score	111.3
Seed ortholog evalue	3.6e-22
Seed eggNOG ortholog	4513.MLOC_370.1
KEGG ko	ko:K02256
KEGG TC	3.D.4.11,3.D.4.7,3.D.4.8
KEGG Pathway	ko00190,ko01100,ko04260,ko04714,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04260,map04714,map04932,map05010,map05012,map05016
KEGG Module	M00154
GOs	GO:0006091,GO:0006119,GO:0006123,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0009060,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0015672,GO:0015980,GO:0015988,GO:0015990,GO:0016310,GO:0017144,GO:0019637,GO:0019646,GO:0019693,GO:0022900,GO:0022904,GO:0034220,GO:0034641,GO:0042773,GO:0042775,GO:0044237,GO:0044238,GO:0044281,GO:0045333,GO:0046034,GO:0046483,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0055114,GO:0071704,GO:0072521,GO:0098655,GO:0098660,GO:0098662,GO:1901135,GO:1901360,GO:1901564,GO:1902600
EggNOG free text desc.	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
EggNOG OGs	37QZZ@33090,3GEEJ@35493,3IAIW@38820,3KME8@4447,COG0843@1,KOG4769@2759
EC	1.9.3.1
COG Functional cat.	C
Best tax level	Poales
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko00002,ko01000,ko03029
Hectar predicted targeting category	signal anchor
Exons	3
Model size	2318
Cds size	414
Stop	1
Start	1