mRNA_P-canaliculata_contig99756.24093.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-canaliculata_contig99756.24093.1
Unique Name	mRNA_P-canaliculata_contig99756.24093.1
Type	mRNA
Organism	Pelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))

Homology

The following BLAST results are available for this feature:

BLAST of mRNA_P-canaliculata_contig99756.24093.1 vs. uniprot

BLAST of mRNA_P-canaliculata_contig99756.24093.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0

ZOOM

x 1

POSITION

0


Match Name	E-value	Identity	Description

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-canaliculata_contig99756	contig	P-canaliculata_contig99756:11..592 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Pelvetia canaliculata dioecious	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	1
Model size	582
Cds size	582
Stop	0
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622817357.0350006-CDS-P-canaliculata_contig99756:10..592	1622817357.0350006-CDS-P-canaliculata_contig99756:10..592	Pelvetia canaliculata dioecious	CDS	P-canaliculata_contig99756 11..592 +
1693495244.7043872-CDS-P-canaliculata_contig99756:10..592	1693495244.7043872-CDS-P-canaliculata_contig99756:10..592	Pelvetia canaliculata dioecious	CDS	P-canaliculata_contig99756 11..592 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-canaliculata_contig99756.24093.1	prot_P-canaliculata_contig99756.24093.1	Pelvetia canaliculata dioecious	polypeptide	P-canaliculata_contig99756 11..592 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-canaliculata_contig99756:11..592+
coding sequence from alignment at P-canaliculata_contig99756:11..592+

protein sequence of mRNA_P-canaliculata_contig99756.24093.1

>prot_P-canaliculata_contig99756.24093.1 ID=prot_P-canaliculata_contig99756.24093.1|Name=mRNA_P-canaliculata_contig99756.24093.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=194bp
YERRRSFGATEKIEDDIQLRVIDHLYPHVLAGLFAGRINSIPEGALRQAK
IAVKANELTQRDIASHEYLDSEQPGVNLNYVHLMRAWLLYKQEPDPNTRL
RKYLDWSYKKSLNSKQIALFMSIFLSNNRLPRMIKGLDGKDPEKLLANIR
NAAWDVFYLGSVETLTKKPAGETNTCWCLVTRDKLLARLGADIL

mRNA from alignment at P-canaliculata_contig99756:11..592+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-canaliculata_contig99756.24093.1 ID=mRNA_P-canaliculata_contig99756.24093.1|Name=mRNA_P-canaliculata_contig99756.24093.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=582bp|location=Sequence derived from alignment at P-canaliculata_contig99756:11..592+ (Pelvetia canaliculata dioecious)
TATGAGCGACGAAGGTCTTTTGGAGCAACCGAAAAAATTGAGGACGATAT
TCAACTCAGAGTAATCGACCATCTCTATCCACATGTTCTCGCCGGTTTAT
TTGCAGGGAGAATTAATTCGATCCCAGAGGGCGCATTACGGCAAGCTAAA
ATTGCGGTCAAAGCAAATGAGCTTACTCAGAGAGATATAGCATCACACGA
ATATCTTGATAGTGAACAACCAGGTGTGAATCTTAACTATGTCCACCTGA
TGCGTGCATGGCTTCTCTACAAGCAAGAACCCGATCCCAATACTAGACTT
CGCAAGTATTTGGATTGGAGCTATAAAAAATCTTTAAATTCAAAACAAAT
TGCTTTGTTTATGTCAATATTTCTTTCAAACAACAGATTGCCACGAATGA
TAAAGGGTCTCGATGGAAAGGATCCAGAAAAGCTGCTCGCAAATATTAGG
AATGCAGCTTGGGATGTATTTTATTTAGGTTCGGTCGAAACGCTTACAAA
GAAACCGGCAGGTGAAACTAACACATGCTGGTGTCTGGTAACCCGAGATA
AATTGCTAGCACGCTTAGGAGCAGACATACTC

Coding sequence (CDS) from alignment at P-canaliculata_contig99756:11..592+

>mRNA_P-canaliculata_contig99756.24093.1 ID=mRNA_P-canaliculata_contig99756.24093.1|Name=mRNA_P-canaliculata_contig99756.24093.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1164bp|location=Sequence derived from alignment at P-canaliculata_contig99756:11..592+ (Pelvetia canaliculata dioecious)
TATGAGCGACGAAGGTCTTTTGGAGCAACCGAAAAAATTGAGGACGATAT
TCAACTCAGAGTAATCGACCATCTCTATCCACATGTTCTCGCCGGTTTAT
TTGCAGGGAGAATTAATTCGATCCCAGAGGGCGCATTACGGCAAGCTAAA
ATTGCGGTCAAAGCAAATGAGCTTACTCAGAGAGATATAGCATCACACGA
ATATCTTGATAGTGAACAACCAGGTGTGAATCTTAACTATGTCCACCTGA
TGCGTGCATGGCTTCTCTACAAGCAAGAACCCGATCCCAATACTAGACTT
CGCAAGTATTTGGATTGGAGCTATAAAAAATCTTTAAATTCAAAACAAAT
TGCTTTGTTTATGTCAATATTTCTTTCAAACAACAGATTGCCACGAATGA
TAAAGGGTCTCGATGGAAAGGATCCAGAAAAGCTGCTCGCAAATATTAGG
AATGCAGCTTGGGATGTATTTTATTTAGGTTCGGTCGAAACGCTTACAAA
GAAACCGGCAGGTGAAACTAACACATGCTGGTGTCTGGTAACCCGAGATA
AATTGCTAGCACGCTTAGGAGCAGACATACTCTATGAGCGACGAAGGTCT
TTTGGAGCAACCGAAAAAATTGAGGACGATATTCAACTCAGAGTAATCGA
CCATCTCTATCCACATGTTCTCGCCGGTTTATTTGCAGGGAGAATTAATT
CGATCCCAGAGGGCGCATTACGGCAAGCTAAAATTGCGGTCAAAGCAAAT
GAGCTTACTCAGAGAGATATAGCATCACACGAATATCTTGATAGTGAACA
ACCAGGTGTGAATCTTAACTATGTCCACCTGATGCGTGCATGGCTTCTCT
ACAAGCAAGAACCCGATCCCAATACTAGACTTCGCAAGTATTTGGATTGG
AGCTATAAAAAATCTTTAAATTCAAAACAAATTGCTTTGTTTATGTCAAT
ATTTCTTTCAAACAACAGATTGCCACGAATGATAAAGGGTCTCGATGGAA
AGGATCCAGAAAAGCTGCTCGCAAATATTAGGAATGCAGCTTGGGATGTA
TTTTATTTAGGTTCGGTCGAAACGCTTACAAAGAAACCGGCAGGTGAAAC
TAACACATGCTGGTGTCTGGTAACCCGAGATAAATTGCTAGCACGCTTAG
GAGCAGACATACTC