Homology
BLAST of mRNA_P-canaliculata_contig99713.24088.1 vs. uniprot
Match:
A0A5C6CCP2_9BACT (Transposase for transposon Tn5 n=1 Tax=Novipirellula galeiformis TaxID=2528004 RepID=A0A5C6CCP2_9BACT)
HSP 1 Score: 67.8 bits (164), Expect = 8.120e-11
Identity = 27/61 (44.26%), Postives = 40/61 (65.57%), Query Frame = 3
Query: 177 QERNTSQRLMRDRKSLSWGQLVEQVGPPPAETQWINVCNCNADYFAFYCRMIDQGHDWVVR 359
++ + +QRL R R+ WG++V+QVGPPP +QWI+V + D F +C + G DWVVR
Sbjct: 148 KKESRTQRLKRTREGCYWGEVVDQVGPPPEGSQWIHVFDRGGDNFESFCHLAQSGCDWVVR 208
BLAST of mRNA_P-canaliculata_contig99713.24088.1 vs. uniprot
Match:
UPI0019A1523D (IS4 family transposase n=1 Tax=Pirellulaceae bacterium TaxID=2699754 RepID=UPI0019A1523D)
HSP 1 Score: 61.2 bits (147), Expect = 1.600e-8
Identity = 25/54 (46.30%), Postives = 35/54 (64.81%), Query Frame = 3
Query: 198 RLMRDRKSLSWGQLVEQVGPPPAETQWINVCNCNADYFAFYCRMIDQGHDWVVR 359
RL R R+S WGQ+++QVGPPP ++ +V + D F YC ++ Q DWVVR
Sbjct: 156 RLQRPRESRLWGQVIDQVGPPPENVRFTHVFDRGGDNFEVYCHLLLQRTDWVVR 209
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig99713.24088.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 8.12e-11 / Id = 44.26 Expect = 1.60e-8 / Id = 46.30 Sequence A0A5C6CCP2_9BACT UPI0019A1523D
Match Name E-value Identity Description
A0A5C6CCP2_9BACT 8.120e-11 44.26 Transposase for transposon Tn5 n=1 Tax=Novipirellu... [more] UPI0019A1523D 1.600e-8 46.30 IS4 family transposase n=1 Tax=Pirellulaceae bacte... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Bacteria Seed ortholog score 60.8 Seed ortholog evalue 2.1e-07 Seed eggNOG ortholog 886293.Sinac_0552 EggNOG free text desc. PFAM Transposase Tn5 dimerisation domain EggNOG OGs 2IZKA@203682,COG3385@1,COG3385@2 COG Functional cat. L Best tax level Planctomycetes Best eggNOG OG NA|NA|NA Hectar predicted targeting category no signal peptide or anchor Exons 1 Model size 359 Cds size 156 Stop 0 Start 1
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622817356.6297717-CDS-P-canaliculata_contig99713:7..163 1622817356.6297717-CDS-P-canaliculata_contig99713:7..163 Pelvetia canaliculata dioecious CDS P-canaliculata_contig99713 8..163 - 1693495244.4197881-CDS-P-canaliculata_contig99713:7..163 1693495244.4197881-CDS-P-canaliculata_contig99713:7..163 Pelvetia canaliculata dioecious CDS P-canaliculata_contig99713 8..163 -
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622817356.6421409-UTR-P-canaliculata_contig99713:163..366 1622817356.6421409-UTR-P-canaliculata_contig99713:163..366 Pelvetia canaliculata dioecious UTR P-canaliculata_contig99713 164..366 - 1693495244.432059-UTR-P-canaliculata_contig99713:163..366 1693495244.432059-UTR-P-canaliculata_contig99713:163..366 Pelvetia canaliculata dioecious UTR P-canaliculata_contig99713 164..366 -
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig99713.24088.1
>prot_P-canaliculata_contig99713.24088.1 ID=prot_P-canaliculata_contig99713.24088.1|Name=mRNA_P-canaliculata_contig99713.24088.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=52bp
MRDRKSLSWGQLVEQVGPPPAETQWINVCNCNADYFAFYCRMIDQGHDWV back to top mRNA from alignment at P-canaliculata_contig99713:8..366-
Legend: UTR CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig99713.24088.1 ID=mRNA_P-canaliculata_contig99713.24088.1|Name=mRNA_P-canaliculata_contig99713.24088.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=359bp|location=Sequence derived from alignment at P-canaliculata_contig99713:8..366- (Pelvetia canaliculata dioecious)TTGCTGCTGAACGATCTTGGCGAACTTAATTCCGGCTATAATTCGAAAGT
CAAAGGGCTCAGTCCGGTCGGCAATTGCTCTTGTGGTTTTTTGATGCAAA
ACTCATTGGCCGTTACACCGGAGGGGGATGTGATTGGGCTGGCTGGTCAG
AAGCTTCGCCACCGGAAACTTAAGCCCAAGAACGAAACACGTCCCAACGC
CTC ATGCGTGATCGCAAATCGCTTTCGTGGGGCCAGTTGGTTGAACAAGT
CGGGCCGCCTCCTGCGGAAACTCAGTGGATCAACGTCTGCAATTGTAACG
CCGATTACTTCGCGTTCTATTGTCGGATGATTGACCAGGGCCATGACTGG
GTGGTTCGG back to top Coding sequence (CDS) from alignment at P-canaliculata_contig99713:8..366-
>mRNA_P-canaliculata_contig99713.24088.1 ID=mRNA_P-canaliculata_contig99713.24088.1|Name=mRNA_P-canaliculata_contig99713.24088.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=312bp|location=Sequence derived from alignment at P-canaliculata_contig99713:8..366- (Pelvetia canaliculata dioecious) back to top