mRNA_P-canaliculata_contig99650.24080.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig99650.24080.1
Unique NamemRNA_P-canaliculata_contig99650.24080.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig99650.24080.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig99650contigP-canaliculata_contig99650:256..1002 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size747
Cds size747
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817356.004757-CDS-P-canaliculata_contig99650:255..10021622817356.004757-CDS-P-canaliculata_contig99650:255..1002Pelvetia canaliculata dioeciousCDSP-canaliculata_contig99650 256..1002 +
1693495243.9742193-CDS-P-canaliculata_contig99650:255..10021693495243.9742193-CDS-P-canaliculata_contig99650:255..1002Pelvetia canaliculata dioeciousCDSP-canaliculata_contig99650 256..1002 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig99650.24080.1prot_P-canaliculata_contig99650.24080.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig99650 256..1002 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig99650.24080.1

>prot_P-canaliculata_contig99650.24080.1 ID=prot_P-canaliculata_contig99650.24080.1|Name=mRNA_P-canaliculata_contig99650.24080.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=249bp
VTTKRTKDRSAGIIPADRLLTLGVIAKSVLNRGAASFQRLLPNINWRRDV
AYLKRKGVLESKDGKLFVDPKTKRVMFSAEGFTDRVKAVWIDGLEKLKHH
PDALAELALHYIGTKESWKSAQLLIDSVRYVKPRFWDELYCDALERFDKD
LFRFIRESPISKVEIRHAVCQYKINLGEFEEGIVWAKKMRALARKPGFEK
WAAKSYLLTAECNRKLCQANEATRAYDHAIHIADNVKDDKSVLGNALFE
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mRNA from alignment at P-canaliculata_contig99650:256..1002+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig99650.24080.1 ID=mRNA_P-canaliculata_contig99650.24080.1|Name=mRNA_P-canaliculata_contig99650.24080.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=747bp|location=Sequence derived from alignment at P-canaliculata_contig99650:256..1002+ (Pelvetia canaliculata dioecious)
GTCACGACCAAAAGAACTAAGGATAGGTCGGCAGGCATCATCCCGGCCGA
TCGTCTTTTAACGCTAGGAGTGATTGCGAAAAGCGTTTTGAATCGGGGAG
CGGCGTCTTTCCAACGGCTGTTGCCGAACATCAATTGGCGAAGAGATGTG
GCGTACCTAAAACGGAAAGGAGTTCTTGAATCCAAAGACGGAAAGCTATT
CGTCGATCCAAAAACTAAACGAGTAATGTTTTCGGCCGAAGGCTTCACTG
ACCGTGTCAAGGCAGTCTGGATTGATGGCCTTGAAAAATTGAAGCATCAT
CCTGACGCATTGGCAGAACTGGCTCTCCACTATATCGGAACGAAAGAAAG
TTGGAAATCGGCTCAACTTTTGATTGATTCGGTGCGTTACGTTAAGCCTC
GATTTTGGGACGAACTCTATTGCGACGCACTTGAACGTTTTGACAAAGAC
CTTTTTCGCTTCATTCGCGAGTCACCCATTTCCAAAGTCGAAATTCGTCA
TGCTGTTTGCCAATACAAAATCAACCTTGGCGAATTTGAAGAAGGGATAG
TTTGGGCGAAGAAGATGCGCGCCTTGGCAAGAAAACCTGGTTTTGAAAAA
TGGGCCGCAAAGTCGTATTTACTCACGGCAGAGTGCAATCGAAAACTTTG
TCAAGCAAACGAAGCAACGCGCGCATACGACCATGCGATCCATATTGCAG
ATAACGTAAAAGATGACAAATCTGTTTTGGGCAATGCGCTCTTTGAG
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Coding sequence (CDS) from alignment at P-canaliculata_contig99650:256..1002+

>mRNA_P-canaliculata_contig99650.24080.1 ID=mRNA_P-canaliculata_contig99650.24080.1|Name=mRNA_P-canaliculata_contig99650.24080.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1494bp|location=Sequence derived from alignment at P-canaliculata_contig99650:256..1002+ (Pelvetia canaliculata dioecious)
GTCACGACCAAAAGAACTAAGGATAGGTCGGCAGGCATCATCCCGGCCGA
TCGTCTTTTAACGCTAGGAGTGATTGCGAAAAGCGTTTTGAATCGGGGAG
CGGCGTCTTTCCAACGGCTGTTGCCGAACATCAATTGGCGAAGAGATGTG
GCGTACCTAAAACGGAAAGGAGTTCTTGAATCCAAAGACGGAAAGCTATT
CGTCGATCCAAAAACTAAACGAGTAATGTTTTCGGCCGAAGGCTTCACTG
ACCGTGTCAAGGCAGTCTGGATTGATGGCCTTGAAAAATTGAAGCATCAT
CCTGACGCATTGGCAGAACTGGCTCTCCACTATATCGGAACGAAAGAAAG
TTGGAAATCGGCTCAACTTTTGATTGATTCGGTGCGTTACGTTAAGCCTC
GATTTTGGGACGAACTCTATTGCGACGCACTTGAACGTTTTGACAAAGAC
CTTTTTCGCTTCATTCGCGAGTCACCCATTTCCAAAGTCGAAATTCGTCA
TGCTGTTTGCCAATACAAAATCAACCTTGGCGAATTTGAAGAAGGGATAG
TTTGGGCGAAGAAGATGCGCGCCTTGGCAAGAAAACCTGGTTTTGAAAAA
TGGGCCGCAAAGTCGTATTTACTCACGGCAGAGTGCAATCGAAAACTTTG
TCAAGCAAACGAAGCAACGCGCGCATACGACCATGCGATCCATATTGCAG
ATAACGTAAAAGATGACAAATCTGTTTTGGGCAATGCGCTCTTTGAGGTC
ACGACCAAAAGAACTAAGGATAGGTCGGCAGGCATCATCCCGGCCGATCG
TCTTTTAACGCTAGGAGTGATTGCGAAAAGCGTTTTGAATCGGGGAGCGG
CGTCTTTCCAACGGCTGTTGCCGAACATCAATTGGCGAAGAGATGTGGCG
TACCTAAAACGGAAAGGAGTTCTTGAATCCAAAGACGGAAAGCTATTCGT
CGATCCAAAAACTAAACGAGTAATGTTTTCGGCCGAAGGCTTCACTGACC
GTGTCAAGGCAGTCTGGATTGATGGCCTTGAAAAATTGAAGCATCATCCT
GACGCATTGGCAGAACTGGCTCTCCACTATATCGGAACGAAAGAAAGTTG
GAAATCGGCTCAACTTTTGATTGATTCGGTGCGTTACGTTAAGCCTCGAT
TTTGGGACGAACTCTATTGCGACGCACTTGAACGTTTTGACAAAGACCTT
TTTCGCTTCATTCGCGAGTCACCCATTTCCAAAGTCGAAATTCGTCATGC
TGTTTGCCAATACAAAATCAACCTTGGCGAATTTGAAGAAGGGATAGTTT
GGGCGAAGAAGATGCGCGCCTTGGCAAGAAAACCTGGTTTTGAAAAATGG
GCCGCAAAGTCGTATTTACTCACGGCAGAGTGCAATCGAAAACTTTGTCA
AGCAAACGAAGCAACGCGCGCATACGACCATGCGATCCATATTGCAGATA
ACGTAAAAGATGACAAATCTGTTTTGGGCAATGCGCTCTTTGAG
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