mRNA_P-canaliculata_contig99572.24070.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig99572.24070.1
Unique NamemRNA_P-canaliculata_contig99572.24070.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig99572.24070.1 vs. uniprot
Match: A0A1E5A3U1_9GAMM (Carb-bd_dom_fam9 domain-containing protein n=1 Tax=Chromatiales bacterium (ex Bugula neritina AB1) TaxID=1868282 RepID=A0A1E5A3U1_9GAMM)

HSP 1 Score: 58.2 bits (139), Expect = 1.320e-7
Identity = 38/112 (33.93%), Postives = 58/112 (51.79%), Query Frame = 1 
Query:    1 PAFLAQLRVLDVSQLSVQVLINGNEIALQPDDSDRFVGETTIPSVGDSTIVVVWTGPGG----LDLARAEK-VFNGST--VVIFDGDYDKSFDADEDGRTNIVELDAGTDPL 315
            PA L  +  LD   L++ V +N     L   + + + G   +P+   S +VV W    G    L LAR +K V  G+   VV+F+  Y+ +FD D DG +N+VEL+ G  P+
Sbjct:   45 PALLRTVAALDGDNLTLDVAVNDQVTVLTQTEPNLWTGTVNVPANRSSDVVVSWGQNYGTFGYLPLARQQKSVVVGADPGVVVFENGYNTAFDFDNDGMSNLVELEEGRSPV 156
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig99572.24070.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A1E5A3U1_9GAMM1.320e-733.93Carb-bd_dom_fam9 domain-containing protein n=1 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig99572contigP-canaliculata_contig99572:699..1025 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size327
Cds size327
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817355.2213378-CDS-P-canaliculata_contig99572:698..10251622817355.2213378-CDS-P-canaliculata_contig99572:698..1025Pelvetia canaliculata dioeciousCDSP-canaliculata_contig99572 699..1025 -
1693495243.3827481-CDS-P-canaliculata_contig99572:698..10251693495243.3827481-CDS-P-canaliculata_contig99572:698..1025Pelvetia canaliculata dioeciousCDSP-canaliculata_contig99572 699..1025 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig99572.24070.1prot_P-canaliculata_contig99572.24070.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig99572 699..1025 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig99572.24070.1

>prot_P-canaliculata_contig99572.24070.1 ID=prot_P-canaliculata_contig99572.24070.1|Name=mRNA_P-canaliculata_contig99572.24070.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=109bp
PAFLAQLRVLDVSQLSVQVLINGNEIALQPDDSDRFVGETTIPSVGDSTI
VVVWTGPGGLDLARAEKVFNGSTVVIFDGDYDKSFDADEDGRTNIVELDA
GTDPLDPTD
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mRNA from alignment at P-canaliculata_contig99572:699..1025-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig99572.24070.1 ID=mRNA_P-canaliculata_contig99572.24070.1|Name=mRNA_P-canaliculata_contig99572.24070.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=327bp|location=Sequence derived from alignment at P-canaliculata_contig99572:699..1025- (Pelvetia canaliculata dioecious)
CCTGCATTTCTGGCTCAGCTCCGAGTTCTCGACGTGTCGCAGCTGAGTGT
GCAGGTTCTGATCAACGGCAACGAAATTGCGCTGCAACCTGACGACAGCG
ATCGGTTCGTGGGCGAAACGACCATTCCCTCCGTTGGTGATTCGACCATT
GTCGTCGTCTGGACGGGCCCCGGCGGTCTGGATCTGGCACGAGCGGAGAA
AGTCTTCAATGGCAGCACCGTGGTCATCTTCGACGGTGATTACGACAAGT
CGTTCGACGCTGACGAAGACGGTCGAACGAACATCGTGGAACTCGACGCG
GGTACCGACCCGCTGGACCCCACCGAT
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Coding sequence (CDS) from alignment at P-canaliculata_contig99572:699..1025-

>mRNA_P-canaliculata_contig99572.24070.1 ID=mRNA_P-canaliculata_contig99572.24070.1|Name=mRNA_P-canaliculata_contig99572.24070.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=654bp|location=Sequence derived from alignment at P-canaliculata_contig99572:699..1025- (Pelvetia canaliculata dioecious)
CCTGCATTTCTGGCTCAGCTCCGAGTTCTCGACGTGTCGCAGCTGAGTGT
GCAGGTTCTGATCAACGGCAACGAAATTGCGCTGCAACCTGACGACAGCG
ATCGGTTCGTGGGCGAAACGACCATTCCCTCCGTTGGTGATTCGACCATT
GTCGTCGTCTGGACGGGCCCCGGCGGTCTGGATCTGGCACGAGCGGAGAA
AGTCTTCAATGGCAGCACCGTGGTCATCTTCGACGGTGATTACGACAAGT
CGTTCGACGCTGACGAAGACGGTCGAACGAACATCGTGGAACTCGACGCG
GGTACCGACCCGCTGGACCCCACCGATCCTGCATTTCTGGCTCAGCTCCG
AGTTCTCGACGTGTCGCAGCTGAGTGTGCAGGTTCTGATCAACGGCAACG
AAATTGCGCTGCAACCTGACGACAGCGATCGGTTCGTGGGCGAAACGACC
ATTCCCTCCGTTGGTGATTCGACCATTGTCGTCGTCTGGACGGGCCCCGG
CGGTCTGGATCTGGCACGAGCGGAGAAAGTCTTCAATGGCAGCACCGTGG
TCATCTTCGACGGTGATTACGACAAGTCGTTCGACGCTGACGAAGACGGT
CGAACGAACATCGTGGAACTCGACGCGGGTACCGACCCGCTGGACCCCAC
CGAT
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