mRNA_P-canaliculata_contig99563.24066.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig99563.24066.1
Unique NamemRNA_P-canaliculata_contig99563.24066.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig99563.24066.1 vs. uniprot
Match: D8LK44_ECTSI (ABC transporter-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK44_ECTSI)

HSP 1 Score: 127 bits (318), Expect = 7.190e-33
Identity = 63/72 (87.50%), Postives = 66/72 (91.67%), Query Frame = 1
Query:    4 FKSLGVKLSNPDDDDSIEKLALVMFDTRNIKGLDFNPFSNKNVLKLNAVKEYPQDLYFILRTVLMFRGMAQA 219
            F  LGVKLSNPDD DSIEKLALVMFDTR IKGLDFNPFS+ NVLKLN+V EYPQDLYFILRTVLMFRGMAQ+
Sbjct:  406 FNGLGVKLSNPDDADSIEKLALVMFDTRTIKGLDFNPFSDNNVLKLNSVLEYPQDLYFILRTVLMFRGMAQS 477          
BLAST of mRNA_P-canaliculata_contig99563.24066.1 vs. uniprot
Match: A0A835Z9N8_9STRA (ABC transporter-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9N8_9STRA)

HSP 1 Score: 115 bits (289), Expect = 9.090e-29
Identity = 55/73 (75.34%), Postives = 63/73 (86.30%), Query Frame = 1
Query:    1 SFKSLGVKLSNPDDDDSIEKLALVMFDTRNIKGLDFNPFSNKNVLKLNAVKEYPQDLYFILRTVLMFRGMAQA 219
            +FK LG+ L NPDD DSIEKLALVMFDT+ I GL+FNPFS  NVLKLN+VK+YPQDLYF+LR  LMFRGMAQ+
Sbjct:  391 AFKGLGIVLENPDDSDSIEKLALVMFDTKPIAGLNFNPFSEGNVLKLNSVKQYPQDLYFVLRAALMFRGMAQS 463          
BLAST of mRNA_P-canaliculata_contig99563.24066.1 vs. uniprot
Match: H6WB89_VAULI (ABC transporter-like protein n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WB89_VAULI)

HSP 1 Score: 103 bits (256), Expect = 5.260e-24
Identity = 44/73 (60.27%), Postives = 61/73 (83.56%), Query Frame = 1
Query:    1 SFKSLGVKLSNPDDDDSIEKLALVMFDTRNIKGLDFNPFSNKNVLKLNAVKEYPQDLYFILRTVLMFRGMAQA 219
            +FK LG+K+++P++ DSIEKLALVMFD RNI G + NPFS  N++K N +K+YPQDLYF+LR  +MFRGM+++
Sbjct:  541 AFKGLGIKIADPNNSDSIEKLALVMFDARNIDGANLNPFSQDNIMKQNRIKQYPQDLYFVLRAAIMFRGMSES 613          
BLAST of mRNA_P-canaliculata_contig99563.24066.1 vs. uniprot
Match: A0A6U1M370_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1M370_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 2.540e-16
Identity = 34/70 (48.57%), Postives = 49/70 (70.00%), Query Frame = 1
Query:    4 FKSLGVKLSNPDDDDSIEKLALVMFDTRNIKGLDFNPFSNKNVLKLNAVKEYPQDLYFILRTVLMFRGMA 213
            F +LG ++ NP+D ++IEK+ L MFDT+  K ++ NPFS  +++  N V   P D+YFILR V MFRG+A
Sbjct:   19 FHNLGFEVLNPEDTENIEKMVLAMFDTQGTKEININPFSEDSLINANPVTNIPSDMYFILRAVQMFRGLA 88          
BLAST of mRNA_P-canaliculata_contig99563.24066.1 vs. uniprot
Match: A0A836CNM3_9STRA (ABC transporter-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNM3_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 2.250e-15
Identity = 36/70 (51.43%), Postives = 52/70 (74.29%), Query Frame = 1
Query:    4 FKSLGVKLSNPDDDDSIEKLALVMFDTRNIKGLDFNPFSNKNVLKLNAVKEYPQDLYFILRTVLMFRGMA 213
            F  LGVK+SNP+D  S+ +LAL MF++R++KG+ F+PFS  N L  N V  +P +L+F+LR+V M RG+A
Sbjct:  339 FLGLGVKVSNPEDSTSLRQLALSMFESRDVKGMVFSPFSPDNALASNQVTAFPPELFFVLRSVQMLRGLA 408          
BLAST of mRNA_P-canaliculata_contig99563.24066.1 vs. uniprot
Match: A0A7S4D6K6_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D6K6_HETAK)

HSP 1 Score: 73.2 bits (178), Expect = 1.670e-13
Identity = 32/70 (45.71%), Postives = 49/70 (70.00%), Query Frame = 1
Query:    4 FKSLGVKLSNPDDDDSIEKLALVMFDTRNIKGLDFNPFSNKNVLKLNAVKEYPQDLYFILRTVLMFRGMA 213
            F  +G+KL NP+D  S   +A+ MFDTR I G   NPF ++N L+ NAVK +P DL+F+LR++ + +G++
Sbjct:  268 FYDMGMKLENPNDTTSAHAIAVTMFDTRRIPGFVTNPFDSRNALRSNAVKVFPPDLFFMLRSIQIIKGIS 337          
BLAST of mRNA_P-canaliculata_contig99563.24066.1 vs. uniprot
Match: A0A7S4DCV0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DCV0_HETAK)

HSP 1 Score: 71.6 bits (174), Expect = 6.690e-13
Identity = 35/71 (49.30%), Postives = 49/71 (69.01%), Query Frame = 1
Query:    4 FKSLGVKLSNPDDDDSIEKLALVMFDTRNIKGLD-FNPFSNKNVLKLNAVKEYPQDLYFILRTVLMFRGMA 213
            F +LG ++ NP D  SI K+   MFDTR I G D  NPF+  ++LKLN V + P+D+YF+LR + MFRG++
Sbjct:  459 FFALGFEVQNPGDHASIVKMVRGMFDTREILGKDDLNPFAEASLLKLNPVTQIPEDIYFVLRAIQMFRGLS 529          
BLAST of mRNA_P-canaliculata_contig99563.24066.1 vs. uniprot
Match: A0A0G4F3L2_VITBC (Protein kinase domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4F3L2_VITBC)

HSP 1 Score: 64.3 bits (155), Expect = 2.530e-10
Identity = 29/67 (43.28%), Postives = 48/67 (71.64%), Query Frame = 1
Query:   13 LGVKLSNPDDDDSIEKLALVMFDTRNIKGLDFNPFSNKNVLKLNAVKEYPQDLYFILRTVLMFRGMA 213
            LG+ + +P ++ ++E++A+ MFDTR + G+ FN FS    LK NAV  +PQDL+F+LR+  + RG++
Sbjct:  440 LGIHVEDPSNNATLERMAVSMFDTRKMPGVCFNIFSPDYTLKSNAVLGFPQDLFFVLRSCQLLRGLS 506          
BLAST of mRNA_P-canaliculata_contig99563.24066.1 vs. uniprot
Match: A0A1Y1HSN1_KLENI (Protein kinase superfamily protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HSN1_KLENI)

HSP 1 Score: 62.4 bits (150), Expect = 1.200e-9
Identity = 29/71 (40.85%), Postives = 49/71 (69.01%), Query Frame = 1
Query:    1 SFKSLGVKLSNPDDDDSIEKLALVMFDTRNIKGLD-FNPFSNKNVLKLNAVKEYPQDLYFILRTVLMFRGM 210
            +F++LG++   P D  S   +A +MFDTR  K  +  NPF++++ ++ N V E+P+DL+F+LRTV + RG+
Sbjct:  486 AFRALGIRTEKPPDVHSFSNMAGLMFDTRMPKDRESLNPFTDESEIQKNPVTEFPKDLFFVLRTVQLLRGL 556          
BLAST of mRNA_P-canaliculata_contig99563.24066.1 vs. uniprot
Match: A0A7S2TJT0_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TJT0_9EUKA)

HSP 1 Score: 59.7 bits (143), Expect = 8.820e-9
Identity = 31/70 (44.29%), Postives = 44/70 (62.86%), Query Frame = 1
Query:    1 SFKSLGVKLSNPDDDDSIEKLALVMFDTRNIKGLDFNPFSNKNVLKLNAVKEYPQDLYFILRTVLMFRGM 210
            +F +LG+K+ N  D DSI  +A  MFDT+  +G   N F     L  NAVK  P+D++FILRT+ + RG+
Sbjct:  186 AFLNLGIKVENETDLDSITTIARTMFDTKAYEGDCNNIFDADCALNKNAVKTMPRDIFFILRTIQIIRGL 255          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig99563.24066.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LK44_ECTSI7.190e-3387.50ABC transporter-like protein n=1 Tax=Ectocarpus si... [more]
A0A835Z9N8_9STRA9.090e-2975.34ABC transporter-like protein n=1 Tax=Tribonema min... [more]
H6WB89_VAULI5.260e-2460.27ABC transporter-like protein n=1 Tax=Vaucheria lit... [more]
A0A6U1M370_9STRA2.540e-1648.57Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A836CNM3_9STRA2.250e-1551.43ABC transporter-like protein n=1 Tax=Tribonema min... [more]
A0A7S4D6K6_HETAK1.670e-1345.71Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S4DCV0_HETAK6.690e-1349.30Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A0G4F3L2_VITBC2.530e-1043.28Protein kinase domain-containing protein n=1 Tax=V... [more]
A0A1Y1HSN1_KLENI1.200e-940.85Protein kinase superfamily protein n=1 Tax=Klebsor... [more]
A0A7S2TJT0_9EUKA8.820e-944.29Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig99563contigP-canaliculata_contig99563:409..627 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score127.5
Seed ortholog evalue2.6e-27
Seed eggNOG ortholog2880.D8LK44
KEGG koko:K01177,ko:K08869
KEGG ReactionR02112,R11262
KEGG Pathwayko00500,map00500
EggNOG free text desc.regulation of tocopherol cyclase activity
EggNOG OGsCOG0661@1,KOG1235@2759
EC3.2.1.2
COG Functional cat.E
CAZyGH14
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001
Hectar predicted targeting categoryother localisation
Exons1
Model size219
Cds size219
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817354.8175557-CDS-P-canaliculata_contig99563:408..6271622817354.8175557-CDS-P-canaliculata_contig99563:408..627Pelvetia canaliculata dioeciousCDSP-canaliculata_contig99563 409..627 +
1693495243.0723238-CDS-P-canaliculata_contig99563:408..6271693495243.0723238-CDS-P-canaliculata_contig99563:408..627Pelvetia canaliculata dioeciousCDSP-canaliculata_contig99563 409..627 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig99563.24066.1prot_P-canaliculata_contig99563.24066.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig99563 409..627 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig99563.24066.1

>prot_P-canaliculata_contig99563.24066.1 ID=prot_P-canaliculata_contig99563.24066.1|Name=mRNA_P-canaliculata_contig99563.24066.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=73bp
SFKSLGVKLSNPDDDDSIEKLALVMFDTRNIKGLDFNPFSNKNVLKLNAV
KEYPQDLYFILRTVLMFRGMAQA
back to top

mRNA from alignment at P-canaliculata_contig99563:409..627+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig99563.24066.1 ID=mRNA_P-canaliculata_contig99563.24066.1|Name=mRNA_P-canaliculata_contig99563.24066.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=219bp|location=Sequence derived from alignment at P-canaliculata_contig99563:409..627+ (Pelvetia canaliculata dioecious)
AGCTTCAAGAGCCTAGGGGTGAAGCTCAGCAATCCCGACGACGACGACAG CATCGAAAAGCTGGCGCTGGTGATGTTCGACACTCGAAACATCAAGGGGC TCGACTTTAACCCATTTTCGAATAAGAACGTTTTAAAGCTCAATGCCGTC AAGGAGTACCCGCAAGACTTGTACTTCATTCTCCGGACGGTGCTCATGTT CCGAGGCATGGCGCAGGCG
back to top

Coding sequence (CDS) from alignment at P-canaliculata_contig99563:409..627+

>mRNA_P-canaliculata_contig99563.24066.1 ID=mRNA_P-canaliculata_contig99563.24066.1|Name=mRNA_P-canaliculata_contig99563.24066.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=438bp|location=Sequence derived from alignment at P-canaliculata_contig99563:409..627+ (Pelvetia canaliculata dioecious)
AGCTTCAAGAGCCTAGGGGTGAAGCTCAGCAATCCCGACGACGACGACAG
CATCGAAAAGCTGGCGCTGGTGATGTTCGACACTCGAAACATCAAGGGGC
TCGACTTTAACCCATTTTCGAATAAGAACGTTTTAAAGCTCAATGCCGTC
AAGGAGTACCCGCAAGACTTGTACTTCATTCTCCGGACGGTGCTCATGTT
CCGAGGCATGGCGCAGGCGAGCTTCAAGAGCCTAGGGGTGAAGCTCAGCA
ATCCCGACGACGACGACAGCATCGAAAAGCTGGCGCTGGTGATGTTCGAC
ACTCGAAACATCAAGGGGCTCGACTTTAACCCATTTTCGAATAAGAACGT
TTTAAAGCTCAATGCCGTCAAGGAGTACCCGCAAGACTTGTACTTCATTC
TCCGGACGGTGCTCATGTTCCGAGGCATGGCGCAGGCG
back to top