mRNA_P-canaliculata_contig99563.24066.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_P-canaliculata_contig99563.24066.1 vs. uniprot
Match: D8LK44_ECTSI (ABC transporter-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK44_ECTSI) HSP 1 Score: 127 bits (318), Expect = 7.190e-33 Identity = 63/72 (87.50%), Postives = 66/72 (91.67%), Query Frame = 1 Query: 4 FKSLGVKLSNPDDDDSIEKLALVMFDTRNIKGLDFNPFSNKNVLKLNAVKEYPQDLYFILRTVLMFRGMAQA 219 F LGVKLSNPDD DSIEKLALVMFDTR IKGLDFNPFS+ NVLKLN+V EYPQDLYFILRTVLMFRGMAQ+ Sbjct: 406 FNGLGVKLSNPDDADSIEKLALVMFDTRTIKGLDFNPFSDNNVLKLNSVLEYPQDLYFILRTVLMFRGMAQS 477
BLAST of mRNA_P-canaliculata_contig99563.24066.1 vs. uniprot
Match: A0A835Z9N8_9STRA (ABC transporter-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9N8_9STRA) HSP 1 Score: 115 bits (289), Expect = 9.090e-29 Identity = 55/73 (75.34%), Postives = 63/73 (86.30%), Query Frame = 1 Query: 1 SFKSLGVKLSNPDDDDSIEKLALVMFDTRNIKGLDFNPFSNKNVLKLNAVKEYPQDLYFILRTVLMFRGMAQA 219 +FK LG+ L NPDD DSIEKLALVMFDT+ I GL+FNPFS NVLKLN+VK+YPQDLYF+LR LMFRGMAQ+ Sbjct: 391 AFKGLGIVLENPDDSDSIEKLALVMFDTKPIAGLNFNPFSEGNVLKLNSVKQYPQDLYFVLRAALMFRGMAQS 463
BLAST of mRNA_P-canaliculata_contig99563.24066.1 vs. uniprot
Match: H6WB89_VAULI (ABC transporter-like protein n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WB89_VAULI) HSP 1 Score: 103 bits (256), Expect = 5.260e-24 Identity = 44/73 (60.27%), Postives = 61/73 (83.56%), Query Frame = 1 Query: 1 SFKSLGVKLSNPDDDDSIEKLALVMFDTRNIKGLDFNPFSNKNVLKLNAVKEYPQDLYFILRTVLMFRGMAQA 219 +FK LG+K+++P++ DSIEKLALVMFD RNI G + NPFS N++K N +K+YPQDLYF+LR +MFRGM+++ Sbjct: 541 AFKGLGIKIADPNNSDSIEKLALVMFDARNIDGANLNPFSQDNIMKQNRIKQYPQDLYFVLRAAIMFRGMSES 613
BLAST of mRNA_P-canaliculata_contig99563.24066.1 vs. uniprot
Match: A0A6U1M370_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1M370_9STRA) HSP 1 Score: 76.6 bits (187), Expect = 2.540e-16 Identity = 34/70 (48.57%), Postives = 49/70 (70.00%), Query Frame = 1 Query: 4 FKSLGVKLSNPDDDDSIEKLALVMFDTRNIKGLDFNPFSNKNVLKLNAVKEYPQDLYFILRTVLMFRGMA 213 F +LG ++ NP+D ++IEK+ L MFDT+ K ++ NPFS +++ N V P D+YFILR V MFRG+A Sbjct: 19 FHNLGFEVLNPEDTENIEKMVLAMFDTQGTKEININPFSEDSLINANPVTNIPSDMYFILRAVQMFRGLA 88
BLAST of mRNA_P-canaliculata_contig99563.24066.1 vs. uniprot
Match: A0A836CNM3_9STRA (ABC transporter-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNM3_9STRA) HSP 1 Score: 78.6 bits (192), Expect = 2.250e-15 Identity = 36/70 (51.43%), Postives = 52/70 (74.29%), Query Frame = 1 Query: 4 FKSLGVKLSNPDDDDSIEKLALVMFDTRNIKGLDFNPFSNKNVLKLNAVKEYPQDLYFILRTVLMFRGMA 213 F LGVK+SNP+D S+ +LAL MF++R++KG+ F+PFS N L N V +P +L+F+LR+V M RG+A Sbjct: 339 FLGLGVKVSNPEDSTSLRQLALSMFESRDVKGMVFSPFSPDNALASNQVTAFPPELFFVLRSVQMLRGLA 408
BLAST of mRNA_P-canaliculata_contig99563.24066.1 vs. uniprot
Match: A0A7S4D6K6_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D6K6_HETAK) HSP 1 Score: 73.2 bits (178), Expect = 1.670e-13 Identity = 32/70 (45.71%), Postives = 49/70 (70.00%), Query Frame = 1 Query: 4 FKSLGVKLSNPDDDDSIEKLALVMFDTRNIKGLDFNPFSNKNVLKLNAVKEYPQDLYFILRTVLMFRGMA 213 F +G+KL NP+D S +A+ MFDTR I G NPF ++N L+ NAVK +P DL+F+LR++ + +G++ Sbjct: 268 FYDMGMKLENPNDTTSAHAIAVTMFDTRRIPGFVTNPFDSRNALRSNAVKVFPPDLFFMLRSIQIIKGIS 337
BLAST of mRNA_P-canaliculata_contig99563.24066.1 vs. uniprot
Match: A0A7S4DCV0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DCV0_HETAK) HSP 1 Score: 71.6 bits (174), Expect = 6.690e-13 Identity = 35/71 (49.30%), Postives = 49/71 (69.01%), Query Frame = 1 Query: 4 FKSLGVKLSNPDDDDSIEKLALVMFDTRNIKGLD-FNPFSNKNVLKLNAVKEYPQDLYFILRTVLMFRGMA 213 F +LG ++ NP D SI K+ MFDTR I G D NPF+ ++LKLN V + P+D+YF+LR + MFRG++ Sbjct: 459 FFALGFEVQNPGDHASIVKMVRGMFDTREILGKDDLNPFAEASLLKLNPVTQIPEDIYFVLRAIQMFRGLS 529
BLAST of mRNA_P-canaliculata_contig99563.24066.1 vs. uniprot
Match: A0A0G4F3L2_VITBC (Protein kinase domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4F3L2_VITBC) HSP 1 Score: 64.3 bits (155), Expect = 2.530e-10 Identity = 29/67 (43.28%), Postives = 48/67 (71.64%), Query Frame = 1 Query: 13 LGVKLSNPDDDDSIEKLALVMFDTRNIKGLDFNPFSNKNVLKLNAVKEYPQDLYFILRTVLMFRGMA 213 LG+ + +P ++ ++E++A+ MFDTR + G+ FN FS LK NAV +PQDL+F+LR+ + RG++ Sbjct: 440 LGIHVEDPSNNATLERMAVSMFDTRKMPGVCFNIFSPDYTLKSNAVLGFPQDLFFVLRSCQLLRGLS 506
BLAST of mRNA_P-canaliculata_contig99563.24066.1 vs. uniprot
Match: A0A1Y1HSN1_KLENI (Protein kinase superfamily protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HSN1_KLENI) HSP 1 Score: 62.4 bits (150), Expect = 1.200e-9 Identity = 29/71 (40.85%), Postives = 49/71 (69.01%), Query Frame = 1 Query: 1 SFKSLGVKLSNPDDDDSIEKLALVMFDTRNIKGLD-FNPFSNKNVLKLNAVKEYPQDLYFILRTVLMFRGM 210 +F++LG++ P D S +A +MFDTR K + NPF++++ ++ N V E+P+DL+F+LRTV + RG+ Sbjct: 486 AFRALGIRTEKPPDVHSFSNMAGLMFDTRMPKDRESLNPFTDESEIQKNPVTEFPKDLFFVLRTVQLLRGL 556
BLAST of mRNA_P-canaliculata_contig99563.24066.1 vs. uniprot
Match: A0A7S2TJT0_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TJT0_9EUKA) HSP 1 Score: 59.7 bits (143), Expect = 8.820e-9 Identity = 31/70 (44.29%), Postives = 44/70 (62.86%), Query Frame = 1 Query: 1 SFKSLGVKLSNPDDDDSIEKLALVMFDTRNIKGLDFNPFSNKNVLKLNAVKEYPQDLYFILRTVLMFRGM 210 +F +LG+K+ N D DSI +A MFDT+ +G N F L NAVK P+D++FILRT+ + RG+ Sbjct: 186 AFLNLGIKVENETDLDSITTIARTMFDTKAYEGDCNNIFDADCALNKNAVKTMPRDIFFILRTIQIIRGL 255 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig99563.24066.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig99563.24066.1 >prot_P-canaliculata_contig99563.24066.1 ID=prot_P-canaliculata_contig99563.24066.1|Name=mRNA_P-canaliculata_contig99563.24066.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=73bp SFKSLGVKLSNPDDDDSIEKLALVMFDTRNIKGLDFNPFSNKNVLKLNAVback to top mRNA from alignment at P-canaliculata_contig99563:409..627+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig99563.24066.1 ID=mRNA_P-canaliculata_contig99563.24066.1|Name=mRNA_P-canaliculata_contig99563.24066.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=219bp|location=Sequence derived from alignment at P-canaliculata_contig99563:409..627+ (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig99563:409..627+ >mRNA_P-canaliculata_contig99563.24066.1 ID=mRNA_P-canaliculata_contig99563.24066.1|Name=mRNA_P-canaliculata_contig99563.24066.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=438bp|location=Sequence derived from alignment at P-canaliculata_contig99563:409..627+ (Pelvetia canaliculata dioecious)back to top |