mRNA_P-canaliculata_contig99515.24061.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig99515.24061.1 vs. uniprot
Match: A0A5C0E433_9PROT (DUF4365 domain-containing protein n=1 Tax=Aliarcobacter cryaerophilus TaxID=28198 RepID=A0A5C0E433_9PROT) HSP 1 Score: 73.2 bits (178), Expect = 4.200e-11 Identity = 58/245 (23.67%), Postives = 116/245 (47.35%), Query Frame = 1 Query: 31 SKKLNAVAASYHYSAANVIRTYRDESKRSCVRHYRKAVELDPEYLQKPYWWQEMGSAFFQIHRYKASVGCYSKAISLGMADETLALRADALLHAGLYSKAADGF-EIYLRHKEKLTQEAGGSEFTPGLGGWYLKSWCINTVIENLEITERPSITRSLTYTGALDDIGAMINHLKMYGIWQKNI-------WFNVAIALGKSGDLEGSLVGFVMEAMINPSDMEAQGNALSLAMNTQNAFVMGHLM 741
++K++ A Y+Y AN +R + + Y KA++ + Y + Y ++EM + + R++ S CY K + L ++ L ADAL+ G Y ++ + F E + + KE + E W+LK + ++++L+I E+ + T + + + Y NI FN+AI+ + G++V F++ A++N D E+ N++ A+N Q+ V+ +++
Sbjct: 349 NEKMHLGIAYYNY--ANFLRM---KDLKKSFHFYNKALKYNTHYCTEDYIFKEMAGLLWDLDRFEMSAKCYKKGLELKEDLNSIVLYADALMFQGKYLESKNKFIEYFEKKKEDIHPE------------WHLKESILGIIVDDLKIKEQKRNYKKAMNTKTIKNCNGQKIPDEEYEFIIDNIDALNPLCHFNLAISCSNEDEHFGTMVHFLISALVNRKDKESWLNSIKGALNCQSYNVIPNMI 576
BLAST of mRNA_P-canaliculata_contig99515.24061.1 vs. uniprot
Match: X1KIJ1_9ZZZZ (Uncharacterized protein n=1 Tax=marine sediment metagenome TaxID=412755 RepID=X1KIJ1_9ZZZZ) HSP 1 Score: 52.8 bits (125), Expect = 5.180e-5 Identity = 23/70 (32.86%), Postives = 38/70 (54.29%), Query Frame = 1 Query: 43 NAVAASYHYSAANVIRTYRDESKRSCVRHYRKAVELDPEYLQKPYWWQEMGSAFFQIHRYKASVGCYSKA 252
N + A + Y+ AN R+ + R +++Y +A L+P+YL + YWW E+ F + Y + CY KA
Sbjct: 87 NILKAVFSYNLANSYRS--SHNVRKAIKYYMQAKRLEPDYLNRDYWWYELAGVLFMVKHYGWAESCYLKA 154 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig99515.24061.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig99515.24061.1 >prot_P-canaliculata_contig99515.24061.1 ID=prot_P-canaliculata_contig99515.24061.1|Name=mRNA_P-canaliculata_contig99515.24061.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=254bp MLRLADEFESKKLNAVAASYHYSAANVIRTYRDESKRSCVRHYRKAVELDback to top mRNA from alignment at P-canaliculata_contig99515:280..1044+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig99515.24061.1 ID=mRNA_P-canaliculata_contig99515.24061.1|Name=mRNA_P-canaliculata_contig99515.24061.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=765bp|location=Sequence derived from alignment at P-canaliculata_contig99515:280..1044+ (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig99515:280..1044+ >mRNA_P-canaliculata_contig99515.24061.1 ID=mRNA_P-canaliculata_contig99515.24061.1|Name=mRNA_P-canaliculata_contig99515.24061.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1524bp|location=Sequence derived from alignment at P-canaliculata_contig99515:280..1044+ (Pelvetia canaliculata dioecious)back to top |