Homology
BLAST of mRNA_P-canaliculata_contig99476.24057.1 vs. uniprot
Match:
UPI001BC1F85E (Glycosyltransferase family 4 protein n=1 Tax=Melioribacter sp. TaxID=2052167 RepID=UPI001BC1F85E)
HSP 1 Score: 58.2 bits (139), Expect = 7.450e-6
Identity = 61/300 (20.33%), Postives = 129/300 (43.00%), Query Frame = 1
Query: 34 LAKTFEAKERVALNYIQAIINNGGNVIVYCAANSPLDKAVEKLGIKRLHYKARRVKSFFDLDKVFKISEILKTQQIDLVHSFDEVFIWWLAFLLR-NKPMVPLVHSIFKSSLINYNKFWHKFIINRIDHIMIPSEELATSLLNKFPVKERTFKL--NAFGIPNYTNIIKPADSIKTRLAWSEDDWVLGLTLEHMQIKKKTLDSILNFIESFKDIDPKQIGDRRNVKLLIL-LPALEQDN--KKIKSFIEQIKAQRMGNFIYVHFLDDWLNEQTHLDLWIVLNSRYFMVDHLINSLSHGVP 915
L++++ E ++ + +INNG + C +S + K I + +++F + + FK+S LK + D++HS +W + L+ K PL+ + S I F HK+I R+D ++ S+ ++ +L++ P+ E +L N+ + + ++ +D+ ++G+ K FI + DI + N++ +I+ P+ +DN +IK+ ++ + I+ + D LD+++ + L +LS G P
Sbjct: 8 LSRSWGGLEMYSIQTARQLINNGIETDLLCYKDSRVQKEAMSENIPVI---ISGYRNYFQISEYFKVSNTLKKNRYDIIHSHVSKDLWLMVPALKIPKLSTPLLLTKQMGSYIIKKDFLHKWIYKRVDLVLAISKVISKNLVDTTPLTENKIELLHNSIDTARFNPDKVDRNLVRKEFRVKDDELLIGMIARFSPGKGHE-----EFILAANDI----LHKHDNLRFMIVGEPSKGEDNYASEIKTMAARLDI--LDKIIFTGYRKDTPEVLAALDIFVFPSHAEAFGIALAEALSMGKP 293
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig99476.24057.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 1
0 1 Expect = 7.45e-6 / Id = 20.33 Sequence UPI001BC1F85E
Match Name E-value Identity Description
UPI001BC1F85E 7.450e-6 20.33 Glycosyltransferase family 4 protein n=1 Tax=Melio... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation Exons 1 Model size 981 Cds size 981 Stop 0 Start 1
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622817354.2811542-CDS-P-canaliculata_contig99476:65..1046 1622817354.2811542-CDS-P-canaliculata_contig99476:65..1046 Pelvetia canaliculata dioecious CDS P-canaliculata_contig99476 66..1046 + 1693495242.7494657-CDS-P-canaliculata_contig99476:65..1046 1693495242.7494657-CDS-P-canaliculata_contig99476:65..1046 Pelvetia canaliculata dioecious CDS P-canaliculata_contig99476 66..1046 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig99476.24057.1
>prot_P-canaliculata_contig99476.24057.1 ID=prot_P-canaliculata_contig99476.24057.1|Name=mRNA_P-canaliculata_contig99476.24057.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=327bp
MFRDKNFLIIALAKTFEAKERVALNYIQAIINNGGNVIVYCAANSPLDKA back to top mRNA from alignment at P-canaliculata_contig99476:66..1046+
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig99476.24057.1 ID=mRNA_P-canaliculata_contig99476.24057.1|Name=mRNA_P-canaliculata_contig99476.24057.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=981bp|location=Sequence derived from alignment at P-canaliculata_contig99476:66..1046+ (Pelvetia canaliculata dioecious)ATGTTTAGGGATAAAAATTTCTTAATTATAGCCTTGGCAAAAACTTTTGA
AGCAAAAGAAAGAGTTGCTCTAAATTATATTCAAGCAATTATAAATAACG
GTGGTAATGTTATTGTTTATTGTGCTGCTAATTCGCCTCTCGATAAAGCG
GTTGAAAAGTTAGGTATAAAAAGACTTCATTATAAAGCGAGAAGAGTGAA
AAGCTTTTTTGACTTAGACAAAGTCTTCAAAATTAGTGAAATTTTGAAAA
CTCAACAAATTGATCTGGTTCATAGCTTTGATGAGGTTTTCATTTGGTGG
CTAGCTTTCTTATTAAGAAACAAACCTATGGTCCCATTAGTGCATTCTAT
TTTTAAGTCTAGTCTTATTAATTATAATAAGTTTTGGCATAAGTTTATTA
TAAATAGAATTGATCATATTATGATCCCCTCAGAAGAGCTTGCAACTTCA
CTTCTTAATAAGTTTCCAGTCAAAGAGAGGACTTTTAAGTTGAATGCTTT
TGGTATTCCAAATTATACAAATATTATTAAACCAGCTGATTCAATCAAGA
CGAGGCTTGCTTGGAGTGAAGATGATTGGGTCTTAGGTTTAACTTTAGAG
CATATGCAAATTAAAAAAAAGACTTTAGACTCTATTTTGAACTTTATTGA
ATCTTTTAAAGACATAGATCCTAAGCAGATAGGGGATAGGAGAAATGTAA
AACTTTTAATTTTACTTCCAGCTCTTGAGCAAGATAATAAAAAAATTAAA
AGTTTCATTGAGCAAATAAAAGCTCAGCGGATGGGTAATTTTATTTATGT
CCACTTCTTGGATGATTGGCTAAATGAACAAACCCATCTTGATTTATGGA
TCGTTTTAAATTCTCGCTACTTCATGGTTGATCACTTAATTAATTCCTTA
AGTCATGGTGTGCCGATTCTTATACCAAGAAAACCCTTTATGATGGAATG
GCTAGAATTAAGACGCTCATATGGCGAAAGC back to top Coding sequence (CDS) from alignment at P-canaliculata_contig99476:66..1046+
>mRNA_P-canaliculata_contig99476.24057.1 ID=mRNA_P-canaliculata_contig99476.24057.1|Name=mRNA_P-canaliculata_contig99476.24057.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1962bp|location=Sequence derived from alignment at P-canaliculata_contig99476:66..1046+ (Pelvetia canaliculata dioecious) back to top