mRNA_P-canaliculata_contig994.24053.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig994.24053.1 vs. uniprot
Match: D7FR26_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR26_ECTSI) HSP 1 Score: 259 bits (663), Expect = 1.400e-72 Identity = 223/566 (39.40%), Postives = 266/566 (47.00%), Query Frame = 1 Query: 499 VSADWFARGVHDSWRIGKHGCDNGFLLVASQADRTFAISVGKGLEQFLTSKDRNAALNAMKPLLREGDWDAAILKALEEINGRLRRSLPGEADEDDGEGSHAKMYTSPLSGKWSANMPRAEKSKR---DGYSGDXXXXXXXXXXXXXXXGLFGGWNVGGF---FESAWS-EVTPVSTLLALTLLWGGAKARSFAQRRH---FEAKLRGIEVERPIVRFNA--GGWSVKQEALGSAGTCPICLDTFAVPSSEVQTPCNTVGACTVGEGLIDADGVVVATLP-CGHSFCRSCLERWHKIGSGAKGPCQSTTSHVNSPCPICHEATPALGDPRLACTRRTSRRSLRPRGEAGSVKFSWEGDSSVARGRPSSDLGSSGRMGLRFMWTGSNRGGREVTGRNVSPPXXXXXXXKSRSIGGSPDGVPLTPVKVAPRGMRTDKGGRVRERMAPTMIPGYLRQTDESSSRQRVNREVAFRLASLGSQYPAFVDDRIVNRWLSNDKSSSWSRDPLLVRNHRQGIFGRMRIPKAHFSXXXXXXXXXXXXXXXXNGGMGGHPGSWEKGSGWVSNRSRG 2157
V+A+ FARGV DSWR+GK GCDNGF+LVAS+ DR+FAISVGKGLE++L +DRNAALNAMKPLLREGDWD A++ ALEEI+GRL +L A G S L W E KR DG+ G XXXXXXXXXXXXXX F G+++GGF F +W+ +V P S LLAL+LLWGGA AR+ QRR FEAKL GIE +R ++ +A GGW V Q+AL S G CPICLD F SE + GA T +GL+ ADG+ ATLP CGH+FC+ RPS G + +P GV T G L +T +R+R RE AF+LASLGSQYP F+DDR VNRWLS D SSSWSRDP+L N Q NG +GG G KGSGWV+N SRG
Sbjct: 34 VTAEGFARGVQDSWRVGKRGCDNGFVLVASREDRSFAISVGKGLERYLPPRDRNAALNAMKPLLREGDWDGAVVLALEEIHGRLVGNLAKAAG---GXXXXXXXXLSSLGWGW-------EDLKRWASDGWGGSXXXXXXXXXXXXXX--XFRGFHLGGFENFFRESWNVDVPPGSVLLALSLLWGGATARASLQRRRYDRFEAKLAGIEAQRAMLPLSAAGGGWLVGQDALASRGVCPICLDAF----SEAA---DGSGADT--KGLVGADGMPAATLPDCGHTFCQ----------------------------------------------------------------------------RPS--------------------------GASANP------------------GVSRT---------------------------GRLGETGGEQARERARREAAFQLASLGSQYPKFLDDRTVNRWLSKDYSSSWSRDPMLALNRPQDT-------------------------GSDNGRVGG--GGARKGSGWVTNGSRG 404
BLAST of mRNA_P-canaliculata_contig994.24053.1 vs. uniprot
Match: A0A6H5JG24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG24_9PHAE) HSP 1 Score: 224 bits (571), Expect = 2.390e-61 Identity = 170/330 (51.52%), Postives = 203/330 (61.52%), Query Frame = 1 Query: 367 PQGVEGGVAVVSRILASGGDGVNKKPRGVLSMLERTRSELEGGG--VSADWFARGVHDSWRIGKHGCDNGFLLVASQADRTFAISVGKGLEQFLTSKDRNAALNAMKPLLREGDWDAAILKALEEINGRLRRSLPGEADEDDGEGSHAKMYTSPLSGKWSANMPRAEKSKRDGYSGDXXXXXXXXXXXXXXXGLFGGWNVGGF---FESAWS-EVTPVSTLLALTLLWGGAKARSFAQRRH---FEAKLRGIEVERPIVRFNAGG-WSVKQEALGSAGTCPICLDTFAVPSSEVQTPCNTVGACTVGEGLIDADGVVVATLP-CGHSFCR 1323
P+G GG V +L GG GV+ GGG V+A+ FARGV D WR+GK GCDNGF+LVAS+ DR+FAISVGKGLE++L +DRNAALNAMKPLLREGDWD A+L LEEI+ RL +L A DG G+ A S L W RA XXXXXXXXXXXXXX F G+++GGF F W +V P S LLAL+LLWGGA AR+ QRR FEAKL GIE +R ++ +AGG WSV Q+AL S G CPICLD F SE + GA T +GL+ AD + ATLP CGH+FC+
Sbjct: 6 PRGGAGGGGVGINVLNKGG--------GVV-----------GGGEEVTAEGFARGVQDGWRVGKRGCDNGFVLVASREDRSFAISVGKGLERYLPPRDRNAALNAMKPLLREGDWDGAVLLGLEEIHRRLFENLAKAAGGGDG-GAGA---LSSLGWGWEDLKRRASGGWXXXXXXXXXXXXXXXXXXXXX--XFRGFHLGGFENSFGENWKLDVPPGSVLLALSLLWGGATARASLQRRRYDRFEAKLAGIEAQRAMLPLSAGGGWSVGQDALASRGVCPICLDAF----SEAA---DGSGADT--KGLVGADRMPAATLPDCGHTFCQ 301
BLAST of mRNA_P-canaliculata_contig994.24053.1 vs. uniprot
Match: A0A6H5JLT1_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLT1_9PHAE) HSP 1 Score: 143 bits (360), Expect = 1.100e-31 Identity = 145/503 (28.83%), Postives = 210/503 (41.75%), Query Frame = 1 Query: 2533 SIEGVRTW-RGIQAF*NLAMFLESRRVIAFHWREGAVP*QWKYAVITTVLHEKIDRRTERRYYRGISLVSHPGNVPSR-------SY*ETQ*LL*GQ------GAVTGGLMRVSTRLPD------HRHGVCGAQCRKLSGRQERHSSWALLSSTRRTTLSTALFYGRCSLAFEYRRRWWQSSDKF------TMG*ELVCTLITAYARIGSR*SNDSARVCAIRTAAQHFRIHADHHPPMI*QGYGHPRRANAHLKEPPTSMG--PEPAMDCVN*AV*GMLNADDAYIVSRPARGLAKMMVAIVEA*RSFA*-LSRSRRQILCMPPSRIPRTM--------MLVEATGQTYK*VQYFTYGGGAIPEILDMPTEIARRTRAWWIRIRPSRRELYDKPKETLSSETRMIKAEAIEAVLYGYCARTLCQEHYSILRTVQDRIFFSLSSGHSARDQ----AIDRVLKMNECESIEITVRSRRVMWVGTLIRMSDGSCQSESCSGTLRG 3918
I G W R IQ + + ++ W G +P +WK A T VL++K DR + YRGISL+SH G VP + ++ E +L + G T ++ V RL + R +C K +R W +L+ R + L R R ++ T G C L I + V IR + + R+ L+E T G E +D V AV GML ADDA +VSR A GLA+MM IVE F +S + + L M P T + +EA GQ Y F Y GG + + D+ EI R+R W +R REL+D+PK + R+++AEA+EA+LYG + HY LR++ R+ F + +D + R L+ EC+S+E T+R RR+++ G L R DG G L G
Sbjct: 16 EIVGGEIWSRSIQTY----VLGHLHTILVKVWNGGDIPREWKDA--TKVLYKKGDR-SNCNNYRGISLLSHVGKVPIKIITNRLSAFCEANNILPEEQCGFRPGRSTVDMLFVVRRLQELGRRKKRRLYMCFVDLNKAYDSVDREMLWKVLA---RAGIPAKLIEVIRQFHDGMRARVRMDDEELSDWCFVTQGVRQGCVLSPLLFNIFFA---EVLEVVVIRFSEDDVVL-----------------RSLVCLEEGKTEAGGGEETPLDRVRRAVWGMLYADDAGVVSRSAEGLARMMTIIVEVFGEFGLTVSEKKTETLLMRAKDKPATTSQPASPPPLTIEAAGQEYAQTTEFQYPGGLVNDHGDLTREINCRSRGAWACLRRYGRELFDRPKAPFRLKIRLLQAEAMEALLYGCMTWSPLSGHYQTLRSIHHRLLFRVIGYKLKKDTYRQLSYPRTLERVECQSVEATIRQRRLLFAGALARQPDGRLPKRLMFGELAG 488
BLAST of mRNA_P-canaliculata_contig994.24053.1 vs. uniprot
Match: A0A6H5JBT6_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBT6_9PHAE) HSP 1 Score: 129 bits (324), Expect = 3.490e-28 Identity = 88/258 (34.11%), Postives = 128/258 (49.61%), Query Frame = 1 Query: 3238 GPEPAMDCVN*AV*GMLNADDAYIVSRPARGLAKMMVAIVEA*RSFA*-LSRSRRQILCMPPSRI------PRTMMLVEATGQTYK*VQYFTYGGGAIPEILDMPTEIARRTRAWWIRIRPSRRELYDKPKETLSSETRMIKAEAIEAVLYGYCARTLCQEHYSILRTVQDRIFFSLSSGHSARDQ----AIDRVLKMNECESIEITVRSRRVMWVGTLIRMSDGSCQSESCSGTLRGRCGEDGVGRRKSGSIACRAT 3978
G E +D V AV GML ADDA +VSR A GLA+MM IVE F +S + + L M + P + +EA GQ Y F Y GG + E D+ E R+R W +R REL+D+P+ + R+++AEA++A+LYG + HY LR++ R+ + +D + + LK EC+S+E T+R RR+++ G L R DG G L G + G R ++G C T
Sbjct: 132 GEETPLDRVQRAVWGMLYADDAGVVSRSAEGLARMMTIIVEVFGEFGLTVSEKKTETLLMRKGQADTSQPAPPPPLTIEAAGQKYAQKTEFRYLGGLVNEHGDLTRENNYRSRGAWACLRRYGRELFDRPQAPFRLKIRLLQAEAMDALLYGCMTWSPLSGHYQTLRSIHHRLLLRVIGYKRKKDTYRQLSYAQTLKRVECQSVEATIRQRRLLFAGALARQPDGRLPKRLMFGELAGGRSDVGGDRNRTGRSVCSTT 389
BLAST of mRNA_P-canaliculata_contig994.24053.1 vs. uniprot
Match: A0A6H5K319_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K319_9PHAE) HSP 1 Score: 133 bits (335), Expect = 1.790e-27 Identity = 140/494 (28.34%), Postives = 211/494 (42.71%), Query Frame = 1 Query: 2593 LESRRVIAFH-WREGAVP*QWKYAVITTVLHEKIDRRTERRYYRGISLVSHPGNVPSRSY*ETQ*LL*GQGAVTGGLM---RVSTRLPDHRHGVCGAQCRKLSGRQERHSSWA---LLSSTRRTTLSTALFYGRCSLAFEY--RRRWWQSSDKFTMG*ELVCTLITAYARIGSR*SNDSARVCAIRTAAQHFRIHADHHPPMI*QGYGHPR--------------RANAHLKEPPTSMGPEPAMDCVN*AV*GMLNADDAYIVSRPARGLAKMMVAIVEA*RSFA*-LSRSRRQILCMPPSRIPRT------MMLVEATGQTYK*VQYFTYGGGAIPEILDMPTEIARRTRAWWIRIRPSRRELYDKPKETLSSETRMIKAEAIEAVLYGYCARTLCQEHYSILRTVQDRIFFSLSSGH----SARDQAIDRVLKMNECESIEITVRSRRVMWVGTLIRMSDGSCQSESCSGTLRGRCGED-GVGRRKSGSIAC 3969
LE R I W G +P +WK A+I VLH+K DR + YRGISL+SH G V +++ +T L + LP+ QC GR + L RR + + + A++ R W+ + + E++ + + + +R D + Q R P + + P R +LKE E +D V AV GML ADDA +VS+ A GLA+MM IVE R F +S + + L M R ++ +EA GQ Y F Y GG + E D+ EI R++A W I+ EL+D+P + R+++AEA+EA+LYG + + HY +L+T R+ + + R + + LK C+S+E TVR RR+++ G + R DG G L G GED G G + + C
Sbjct: 839 LERLRAIFVEVWNGGEMPQEWKDAIIK-VLHKKGDR-SNCNNYRGISLLSHVGKVLAKT-------------ITNRLSAFCEANEILPEE-------QCGFRPGRSTVCMLFVVRRLQELGRRRRIPLYMCFIDLQKAYDSVDRELLWKVLARAGIPGEMIAVIRKFHVGMRARVRTDDGELSDWFPVTQGLRQGCSMSPLLFNVFFAAPLEIIVTRFSQDEVIVRDLVYLKE--EERRGEGLLDRVRRAVWGMLYADDAGVVSKSADGLARMMTIIVEVFREFGLTVSERKTETLVMRVKERQRXXXXXXXVLTIEAAGQRYAQTTEFRYLGGLVNEQGDLTREINHRSKAAWACIKRYATELFDRPGAPFRLKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVG--GEDPGQGNPEQNWLTC 1306
BLAST of mRNA_P-canaliculata_contig994.24053.1 vs. uniprot
Match: A0A6H5KS82_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS82_9PHAE) HSP 1 Score: 131 bits (329), Expect = 3.120e-27 Identity = 138/472 (29.24%), Postives = 200/472 (42.37%), Query Frame = 1 Query: 2623 WREGAVP*QWKYAVITTVLHEKIDRRTERRYYRGISLVSHPGNVPSR-------SY*ETQ*LL*GQ------GAVTGGLMRVSTRLPD--HRHGV----CGAQCRKLSGRQERHSSWALLSSTRRTTLSTALFYGRCSLAFEYRRRWWQS----SDKF--TMG*ELVCTLITAYARIGSR*SNDSARVCAIRTAAQHFRIHADHHPPMI*QGYGHPRRANAHLKEPPTSMG--PEPAMDCVN*AV*GMLNADDAYIVSRPARGLAKMMVAIVEA*RSFA*-LSRSRRQILCMPPSRIPRTM--------MLVEATGQTYK*VQYFTYGGGAIPEILDMPTEIARRTRAWWIRIRPSRRELYDKPKETLSSETRMIKAEAIEAVLYGYCARTLCQEHYSILRTVQDRIFFSLSSGHSARDQ----AIDRVLKMNECESIEITVRSRRVMWVGTLIRMSDGSCQSESCSGTLRG 3918
W G +P +WK A I VL+++ DR + YRGISL+SH G VP + ++ E +L + G T ++ V RL + R + C K +R W +L+ R + L R R SD F T G C L I + V IR + + R+ L+E T G E +D V AV GM ADDA +VSR A GLA+MM IVE F +S + + L M P T+ + ++A GQ Y F Y GG + E D+ EI R+R W +R REL+D+P+ + R+++AEA+EA+LYG + HY LR++ R+ + +D + + LK EC+S+E T+R RR+++ G L R DG G L G
Sbjct: 131 WNGGDIPREWKDATIK-VLYKQGDR-SNCNNYRGISLLSHVGKVPIKIITNRLSAFCEANNILPEEQCGCRPGRSTVDMLFVVRRLQELGRRKKIPLYMCFVDLNKAYDSVDREMVWKVLA---RAGIPAKLIEVIRQFHDGMRARAGMDDGELSDWFFVTQGAGQGCVLSPLLFNIFFA---EVLEVVVIRFSEDDVVL-----------------RSLVCLEEGKTEAGGGEETPLDRVRRAVWGMSYADDAGVVSRSAEGLARMMTIIVEVFGEFGLTVSEKKTETLLMRAKDKPTTISQTAPPPPLTIKAAGQKYAQTTEFRYLGGLVNEHGDLTREINYRSRGAWACLRRYGRELFDRPQAPSRLKIRLLQAEAMEALLYGCMTWSPLSRHYQTLRSIHHRLLLRVIGYKRKKDTYRQLSYAQTLKRFECQSVEATIRQRRLLFAGALARQPDGRLPKRLMFGELAG 577
BLAST of mRNA_P-canaliculata_contig994.24053.1 vs. uniprot
Match: A0A6H5KA81_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA81_9PHAE) HSP 1 Score: 130 bits (326), Expect = 4.140e-27 Identity = 134/476 (28.15%), Postives = 203/476 (42.65%), Query Frame = 1 Query: 2593 LESRRVIAFH-WREGAVP*QWKYAVITTVLHEKIDRRTERRYYRGISLVSHPGNVPSRSY*ETQ*LL*GQGAVTGGLM---RVSTRLPDHRHGVCGAQCRKLSGRQERHSSWA---LLSSTRRTTLSTALFYGRCSLAFEY--RRRWWQSSDKFTMG*ELVCTLITAYARIGSR*SNDSARVCAIRTAAQHFRIHADHHPPMI*QGYGHPR--------------RANAHLKEPPTSMGPEPAMDCVN*AV*GMLNADDAYIVSRPARGLAKMMVAIVEA*RSFA*-LSRSRRQILCMPPSRIPRT------MMLVEATGQTYK*VQYFTYGGGAIPEILDMPTEIARRTRAWWIRIRPSRRELYDKPKETLSSETRMIKAEAIEAVLYGYCARTLCQEHYSILRTVQDRIFFSLSSGH----SARDQAIDRVLKMNECESIEITVRSRRVMWVGTLIRMSDGSCQSESCSGTLRG 3918
LE R I W G +P +WK A+I VL++K DR + YRGISL+SH G V +++ +T L + LP+ QC GR + L RR + + + A++ R W+ + + E++ + + + +R D + Q R P + + P R +LKE G +D V AV GML ADDA +VS+ A GLA+MM IVE R F +S + + L M R ++ +EA GQ Y F Y GG + E D+ EI R++A W IR EL+D+P + R+++AEA+EA+LYG + + HY +L+T R+ + + R + + LK C+S+E TVR RR+++ G + R DG G L G
Sbjct: 55 LERLRAIFVEVWNGGEMPQEWKDAIIK-VLYKKGDR-SNCNNYRGISLLSHVGKVLAKT-------------ITNRLSAFCEANEILPEE-------QCGFRPGRSTVCMLFVVRRLQELGRRRRIPLYMCFIDLQKAYDSVDRELLWKVLARAGIPGEMIAVIRKFHVGMRARVRTDDGELSDWFPVTQGLRQGCSMSPLLFNVFFAAPLEIIVTRFSQDEVIVRDLVYLKEEERRGGG--LLDRVRRAVWGMLYADDAGVVSKSADGLARMMTIIVEVFREFGLTVSERKTETLVMRVKERQRXXXXXXXVLTIEAAGQRYAQTTEFRYLGGLVNEQGDLTREINHRSKAAWACIRRYATELFDRPGAPFRLKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVG 506
BLAST of mRNA_P-canaliculata_contig994.24053.1 vs. uniprot
Match: A0A6H5L6A1_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6A1_9PHAE) HSP 1 Score: 126 bits (316), Expect = 9.030e-27 Identity = 84/227 (37.00%), Postives = 120/227 (52.86%), Query Frame = 1 Query: 3238 GPEPAMDCVN*AV*GMLNADDAYIVSRPARGLAKMMVAIVEA*RSFA*-LSRSRRQILCMPPSRIPRTM--------MLVEATGQTYK*VQYFTYGGGAIPEILDMPTEIARRTRAWWIRIRPSRRELYDKPKETLSSETRMIKAEAIEAVLYGYCARTLCQEHYSILRTVQDRI----FFSLSSGHSARDQAIDRVLKMNECESIEITVRSRRVMWVGTLIRMSDG 3879
G E +D V AV G+L ADDA +VSR A GLA+MM IVE F +S + + L M P T + +EA GQ Y F Y GG + E D+ EI R+R W +R REL+D+P+ + R+++AEA+EA+LYG A + HY LR++ R+ F + + R + + LK EC+S+E T+R RR+++ G L R DG
Sbjct: 211 GEETPLDRVRRAVWGVLYADDAGVVSRSAEGLARMMTIIVEVFGEFGLTVSEKKTETLLMRAKDKPTTTSQPIPPPPLTIEAAGQKYAQTTEFRYLGGLVNEHGDLTREINYRSRGAWACLRRYGRELFDRPQAPFRLKIRLLQAEAMEALLYGCMAWSPLSGHYQTLRSIHHRLLLRGFGYKRTKDTYRQLSYAQTLKRVECQSVEATIRQRRLLFAGALARQPDG 437
BLAST of mRNA_P-canaliculata_contig994.24053.1 vs. uniprot
Match: A0A6H5K7U5_9PHAE (Reverse transcriptase domain-containing protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7U5_9PHAE) HSP 1 Score: 130 bits (328), Expect = 9.820e-27 Identity = 139/494 (28.14%), Postives = 211/494 (42.71%), Query Frame = 1 Query: 2593 LESRRVIAFH-WREGAVP*QWKYAVITTVLHEKIDRRTERRYYRGISLVSHPGNVPSRSY*ETQ*LL*GQGAVTGGLM---RVSTRLPDHRHGVCGAQCRKLSGRQERHSSWA---LLSSTRRTTLSTALFYGRCSLAFEY--RRRWWQSSDKFTMG*ELVCTLITAYARIGSR*SNDSARVCAIRTAAQHFRIHADHHPPMI*QGYGHPR--------------RANAHLKEPPTSMGPEPAMDCVN*AV*GMLNADDAYIVSRPARGLAKMMVAIVEA*RSFA*-LSRSRRQILCMPPSRIPRT------MMLVEATGQTYK*VQYFTYGGGAIPEILDMPTEIARRTRAWWIRIRPSRRELYDKPKETLSSETRMIKAEAIEAVLYGYCARTLCQEHYSILRTVQDRIFFSLSSGH----SARDQAIDRVLKMNECESIEITVRSRRVMWVGTLIRMSDGSCQSESCSGTLRGRCGED-GVGRRKSGSIAC 3969
LE R I W G +P +WK A+I VL++K DR + YRGISL+SH G V +++ +T L + LP+ QC GR + L RR + + + A++ R W+ + + E++ + + + +R D + Q R P + + P R +LKE E +D V AV GML ADDA +VS+ A GLA+MM IVE R F +S + + L M R ++ +EA GQ Y F Y GG + E D+ EI R++A W I+ EL+D+P + R+++AEA+EA+LYG + + HY +L+T R+ + + R + + LK C+S+E TVR RR+++ G + R DG G L G GED G G + + C
Sbjct: 552 LERLRAIFVEVWNGGEMPQEWKDAIIK-VLYKKGDR-SNCNNYRGISLLSHVGKVLAKT-------------ITNRLSAFCEANEILPEE-------QCGFRPGRSTVCMLFVVRRLQELGRRRRIPLYMCFIDLQKAYDSVDRELLWKVLARAGIPGEMIAVIRKFHVGMRARVRTDDGELSDWFPVTQGLRQGCSMSPLLFNVFFAAPLEIIVTRFSQDEVIVRDLVYLKE--EERRGEGLLDRVRRAVWGMLYADDAGVVSKSADGLARMMTIIVEVFREFGLTVSERKTETLVMRVKERQRXXXXXXXVLTIEAAGQRYAQTTEFRYLGGLVNEQGDLTREINHRSKAAWACIKRYATELFDRPGAPFRLKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVG--GEDPGRGNPEQNWLTC 1019
BLAST of mRNA_P-canaliculata_contig994.24053.1 vs. uniprot
Match: A0A6H5KBT2_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBT2_9PHAE) HSP 1 Score: 127 bits (318), Expect = 1.240e-26 Identity = 85/240 (35.42%), Postives = 122/240 (50.83%), Query Frame = 1 Query: 3238 GPEPAMDCVN*AV*GMLNADDAYIVSRPARGLAKMMVAIVEA*RSFA*-LSRSRRQILCMPPSRIPRTM--------MLVEATGQTYK*VQYFTYGGGAIPEILDMPTEIARRTRAWWIRIRPSRRELYDKPKETLSSETRMIKAEAIEAVLYGYCARTLCQEHYSILRTVQDRIFFSLSSGHSARDQ----AIDRVLKMNECESIEITVRSRRVMWVGTLIRMSDGSCQSESCSGTLRG 3918
G E +D V AV GML ADDA +VSR A GLA+MM IVE F +S + + L M P T + +EA GQ Y F Y GG + E D+ EI R+R W +R REL+D+P+ + R+++AEA+EA+LYG + HY LR++ R+ + +D + ++LK EC+ +E T+R +R+++ G L R SDG G L G
Sbjct: 265 GEETPLDRVRRAVWGMLYADDAGVVSRSAEGLARMMTIIVEVFGEFGLTVSEKKTETLLMRAKDKPTTTSQPAPPPPLTIEAAGQKYAQTTEFRYLGGLVNEHGDLTREINYRSRGAWACLRRYGRELFDRPQAPFRLKIRLLRAEAMEALLYGCMTWSPLSGHYQTLRSIHHRLLLRVIGYKRKKDTYRQLSYAQMLKRVECQRVEATIRQQRLLFAGALERQSDGRLPKRLMFGELAG 504 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig994.24053.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig994.24053.1 >prot_P-canaliculata_contig994.24053.1 ID=prot_P-canaliculata_contig994.24053.1|Name=mRNA_P-canaliculata_contig994.24053.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=733bp MRPQQHLCMRSYLHRVRIVLLLVYAVLHRVLSHRGDDGGETVQNGWSVEFback to top mRNA from alignment at P-canaliculata_contig994:4492..15877+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig994.24053.1 ID=mRNA_P-canaliculata_contig994.24053.1|Name=mRNA_P-canaliculata_contig994.24053.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=11386bp|location=Sequence derived from alignment at P-canaliculata_contig994:4492..15877+ (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig994:4492..15877+ >mRNA_P-canaliculata_contig994.24053.1 ID=mRNA_P-canaliculata_contig994.24053.1|Name=mRNA_P-canaliculata_contig994.24053.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=4398bp|location=Sequence derived from alignment at P-canaliculata_contig994:4492..15877+ (Pelvetia canaliculata dioecious)back to top |