mRNA_P-canaliculata_contig9937.24050.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig9937.24050.1
Unique NamemRNA_P-canaliculata_contig9937.24050.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig9937.24050.1 vs. uniprot
Match: D7G3K7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3K7_ECTSI)

HSP 1 Score: 128 bits (321), Expect = 2.810e-27
Identity = 71/125 (56.80%), Postives = 90/125 (72.00%), Query Frame = 1 
Query:    1 PVLASKEFEVHDVMGLSLRDEASLFQLECDRSRARFGVILMSFRFDPPVAADVVEDLDVSPCTGTSAVPKSVAPLSAGSGGRDPEEQEAVALACGREQSRPGPEVEDPVYMNVAGNFACLLLDDD 375
            PVLAS EFEVHDV+GLSLR+ AS+FQLECDRSRAR+G+IL++FRFDPPVAADV+  LD     G +++P+ V    A  G  + E+  A       +Q+    EV +PVY+NV G+FACLLLDDD
Sbjct:  118 PVLASVEFEVHDVIGLSLREGASVFQLECDRSRARYGIILLAFRFDPPVAADVLGALDG---VGLASLPRGVT-TPADQGHDEGEKAPAWGAPEAGQQAEREVEVAEPVYINVEGHFACLLLDDD 238
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9937.24050.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G3K7_ECTSI2.810e-2756.80Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig9937contigP-canaliculata_contig9937:5965..9986 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionC2 domain
Ec32 orthologEc-19_005030.1
Hectar predicted targeting categoryother localisation
Exons4
Model size2348
Cds size1347
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig9937.24050.1prot_P-canaliculata_contig9937.24050.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig9937 6927..9518 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817353.7291477-UTR-P-canaliculata_contig9937:5964..69261622817353.7291477-UTR-P-canaliculata_contig9937:5964..6926Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9937 5965..6926 -
1693495242.375825-UTR-P-canaliculata_contig9937:5964..69261693495242.375825-UTR-P-canaliculata_contig9937:5964..6926Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9937 5965..6926 -
1622817353.7769024-UTR-P-canaliculata_contig9937:9518..95301622817353.7769024-UTR-P-canaliculata_contig9937:9518..9530Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9937 9519..9530 -
1693495242.4256692-UTR-P-canaliculata_contig9937:9518..95301693495242.4256692-UTR-P-canaliculata_contig9937:9518..9530Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9937 9519..9530 -
1622817353.788051-UTR-P-canaliculata_contig9937:9959..99861622817353.788051-UTR-P-canaliculata_contig9937:9959..9986Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9937 9960..9986 -
1693495242.4428935-UTR-P-canaliculata_contig9937:9959..99861693495242.4428935-UTR-P-canaliculata_contig9937:9959..9986Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9937 9960..9986 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817353.7402053-CDS-P-canaliculata_contig9937:6926..79251622817353.7402053-CDS-P-canaliculata_contig9937:6926..7925Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9937 6927..7925 -
1693495242.3849611-CDS-P-canaliculata_contig9937:6926..79251693495242.3849611-CDS-P-canaliculata_contig9937:6926..7925Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9937 6927..7925 -
1622817353.7514064-CDS-P-canaliculata_contig9937:8620..88031622817353.7514064-CDS-P-canaliculata_contig9937:8620..8803Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9937 8621..8803 -
1693495242.398734-CDS-P-canaliculata_contig9937:8620..88031693495242.398734-CDS-P-canaliculata_contig9937:8620..8803Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9937 8621..8803 -
1622817353.7657316-CDS-P-canaliculata_contig9937:9353..95181622817353.7657316-CDS-P-canaliculata_contig9937:9353..9518Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9937 9354..9518 -
1693495242.4120207-CDS-P-canaliculata_contig9937:9353..95181693495242.4120207-CDS-P-canaliculata_contig9937:9353..9518Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9937 9354..9518 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig9937.24050.1

>prot_P-canaliculata_contig9937.24050.1 ID=prot_P-canaliculata_contig9937.24050.1|Name=mRNA_P-canaliculata_contig9937.24050.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=449bp
MGLSLRDEASLFQLECDRSRARFGVILMSFRFDPPVAADVVEDLDVSPCT
GTSAVPKSVAPLSAGSGGRDPEEQEAVALACGREQSRPGPEVEDPVYMNV
AGNFACLLLDDDVLQPADFAKVEPREPSKPFVVAPSRRGPNDPADTEGLR
SAHRDPEYSRRSPKARDRGTREAHTNGSEPSPSNPSDSAHERVVAAQNAG
GASTSGSGSSNSSRSNNRSNNSSSNSSSGNGAPSKELRRHAGSFGGLAQQ
ITTLGRGGGGGFGKGTPPLGKRPRPPSTAASVERTPPADPSKQLEEMPQQ
RWMMGRLRQKQELRGAGGSVAGGSGSRDGSKSKRETSVTRPGGWKDGFRR
SSGLSGPRPRPFTIPVSSGRSWGRSSVLLGCETGGDGAVGAANDADGAEA
TFFVSRGNLRPALASDEEGDGAFMKIDSRYNVAIYGKGSGEGTSFWQP*
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mRNA from alignment at P-canaliculata_contig9937:5965..9986-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig9937.24050.1 ID=mRNA_P-canaliculata_contig9937.24050.1|Name=mRNA_P-canaliculata_contig9937.24050.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=4022bp|location=Sequence derived from alignment at P-canaliculata_contig9937:5965..9986- (Pelvetia canaliculata dioecious)
CCGGTATTGGCCAGCAAGGAGTTTGAGGTGAGGGAAATATTGTTTTCGGT
CATCCGGTGCCACGAGAGACAATGAGTCACACCATCGCACCACTGTTGGT
GTACTGCGTATGGCTGTCTGCTCCCCTCCCCGTTATGCACGATCTGCATA
CAGGAGTAGTAGCACATCCAAGAGGACCGTTCGCCTGCCAATGCCCCGAG
CACCTCGGCCGGGTAGTCTGGAGTTTACGTGTGTTGGGAAGCGGTGCGAA
TTCATGAGCCCCAAGCCCGGCATCGATCCGCCTACGGATCCGGATTGCGG
CCCCCAGGCGACCCTACCACCCCCCTTTCGGGCAATCTAATTGCCTGGTT
CGAAAAAGCTGTGCAATGGATGTTTCGTGCGTCCGAATTGAGCGTTTCCG
TTGCGATTCGGTTCTCTTGCCGAATGTATTCGGTGGGTTTTGGCCGACTG
TCCCAGGTTCACGACGTCATGGGGCTCAGCCTCAGGGACGAAGCCTCCCT
GTTCCAGCTGGAATGCGATCGATCTCGCGCGCGATTTGGCGTGATCCTCA
TGTCTTTTCGCTTCGACCCGCCCGTGGCCGCGGACGTCGTTGAGGACTTG
GACGTGTCGCCGTGTACGGGTACCAGTGCCGTGGTAAGAAAGGTCGATTA
TAGGCCGCTCGCGTAGCGACGGCCAAAACTTGAATGGTTGATTTTTCTTT
TTTTCTTGTTTTTTAAAGGGTCTAAAGGAGGGCGGGGGGGGGGGGGGGCT
AGCGCACTTTTTTTTGGTTAACAGCTAGGGCCGAGTTTAAAAAACTTTCA
AAGGTATGTTGCCGGNNNNNNNNNNTTTTTGTTGTTTTTTGTTTTGTGGT
GTGGGTAGGGGGGGGGGGGGGGGGGGGGGTGGGGTGGTGGGGGCTAGCGC
ACTTCTTTTTGGTGAAACGATCAGTCGATCTTTAAAAGATCTTCAAAAGT
ATATAGCCGGGAGAGCGAGTGGATTGGCACCGTATCGTCGCAAGCATCCA
GCATCCAGCATCCAGCAGTGCAACGGTCCAAGGCCTGAAAGACTTTTCGC
CAATAGCGGTGAAACAAAGATGATACAGTACAAGCTAGTAATTTAATGCA
TGTCGCACGCGCTTCACCTCCATTGTGCAAGGAAGCATGGTACGCGTTTT
GGTGCGTCCGTCTCGTGTGCTTTCTCCCCACAGCCAAAGTCGGTGGCTCC
TCTCTCGGCTGGCAGCGGAGGACGCGACCCCGAGGAGCAGGAAGCGGTGG
CGCTGGCTTGTGGCAGGGAGCAAAGCCGACCGGGGCCGGAAGTCGAGGAC
CCCGTGTACATGAACGTGGCAGGGAACTTTGCGTGCCTTCTCCTCGACGA
TGACGTGCTGCAGCCCGTGAGCGAGTACCGGCAGATAGCGCCGTAATAAT
ATTTCGACAAGTTCCCCTCTCGTGCTTTCTACAGGTTTCTAAGCATATTT
TGAGATGCCGGTATTTGCCTATTTTGCAGGTAGGCGCGTGACAAAACCAC
TTTACCCTTTTGGTCATTTCCGAGGCACACACATATTCGATATGTAGCTA
CTTATATACTTGTACTTACCCTTGCGGTGGGAATCAGCCTATTCATTATA
TTAGCCCTTACACAATATACAGTATATATCATATGTCTCAAATCTATTGG
TTAGCAGGAAGCTCGGATTCCGGAAATGGACCCCAAACCTCTTCTGATCC
ACAAGATTGCTCGGTTTATGTCTCGACTTCTCCGCAGTGCCATGAGTTTC
TTCAAACTAGACTCCGTCTCGGGATGGCAAGGCTACGGAGATTTCGCTGC
CGATACAGTCCACGAGCAAGAGCTTGCTTACCTCCCGAGGCGTATATTGA
GCGGAATCCGATCATTTGTACTATCGTTATTCATAATATTGATACGAGCA
GAACCCGATCATTTGTACTACTACAGAGAGATGATCAACACGTCGCTCGT
CTCGGCTGAAACGCCCCAACTATCACACGACACGACATGACACGACACTC
ATCCCCCCGGCTAAACACATTGTCGCCGCCCACCCGGTCACGAACCCTTT
CCACGTAGCAGGCGGACTTCGCCAAGGTGGAACCTCGCGAGCCCTCGAAG
CCGTTTGTGGTAGCTCCCTCGCGCCGAGGCCCGAACGACCCCGCCGACAC
CGAAGGCCTTCGCTCTGCCCACAGGGACCCCGAGTACTCACGACGCTCCC
CCAAGGCTCGGGATCGCGGAACGCGCGAAGCACACACGAACGGGAGTGAA
CCTAGCCCCTCGAACCCTTCCGACTCGGCGCATGAGCGTGTCGTCGCAGC
TCAAAACGCCGGCGGCGCGAGCACGAGCGGAAGCGGCAGCAGCAATAGCA
GCAGGAGCAACAACCGTAGCAACAACAGCAGCAGCAACAGCAGCAGCGGT
AACGGGGCCCCTTCGAAAGAACTTCGTCGACACGCTGGCTCCTTCGGTGG
CCTGGCCCAGCAAATCACCACCCTCGGGCGAGGAGGCGGCGGAGGCTTCG
GCAAGGGAACCCCTCCGCTGGGAAAGAGGCCACGGCCTCCAAGCACGGCC
GCTTCCGTGGAGCGCACTCCACCGGCCGATCCGTCCAAGCAGCTCGAAGA
GATGCCCCAGCAGCGGTGGATGATGGGTAGGCTGCGACAAAAGCAAGAAT
TGAGAGGGGCGGGAGGATCGGTGGCGGGCGGCAGCGGGAGCCGCGACGGC
AGTAAGTCGAAACGGGAAACGAGCGTAACGCGGCCGGGAGGCTGGAAGGA
CGGTTTCCGGCGCAGCTCCGGCCTGAGCGGTCCGCGGCCAAGACCGTTTA
CGATTCCGGTATCGTCGGGGCGATCGTGGGGAAGATCGTCGGTTCTTTTG
GGGTGTGAGACAGGCGGCGACGGAGCCGTGGGTGCAGCGAATGATGCAGA
TGGAGCTGAAGCGACATTTTTTGTCTCGAGGGGCAACTTACGACCGGCGC
TCGCTTCCGACGAGGAAGGAGATGGGGCGTTCATGAAAATCGACTCCAGA
TACAATGTCGCAATCTACGGGAAAGGCTCTGGCGAGGGGACGTCGTTCTG
GCAGCCTTAGCTTTTGCTTTGGAGGAGGAAGTGGGAAGCTTGCTGCAGTA
TTGCTCGTGGCTGTTCTGTAGCCCTGTGCCTGGCGGCAATTTTGCCTTCG
ACCGGTCGACACTCTTGTTTATAGTCTTTAACACTACGGAAACTCTGCGA
TATAGTTAGGCGCCGAAGGCGTTTATATTAGGGAACCATGCAATCGGTCG
ACGTGTGGTTTATTTGCATCGAGAAAACCGTTTCATGTGCACAAGATATC
ATATGTTCATCTACTAGTGTACCGTATTATCTATGAAAAAGCCGCTGCAT
CTCTTATTGGGTTGGTTGCGCGAGCCCACCTCATTTCGATAGGGGCGTAA
ATGCGGTCAAGTGTAGTCCAAGTGTATTTGGTTACGCCCGCTGTGCGCTG
GGCTCCTCGTGACGTCTGAGGGCTATGTTTGCGTGTAAGTTCCATTCTCA
CAGCGCCGGCGAACTGCGGCCCTAAGCCCTCTTTTTAGTGGTATGCATAG
CCCGCCTGGTGTCTTTTCTTCTATGTAACACGAAGAGGTTGATCGATAAC
TGTTGAGAGAGGTTTTGGTCTCTTTTGTGCGAGAGTCATAAATAGCGGGT
CAGATGATCTCAGGGATTAAACGACCGGCCGCTGCCACCCCCTCAACAAG
GCCGTACACCAGGGAAGAGAAAAGGATGGACACTCGGCGCGTGGAGACTT
CAGCCCGTCACTCGTAGTTGGCGCGGAGAAGACTTGCCCCACGATAGGCT
ACGGTTACTAATACTATTTCTTTTGACGCCAGGGTGTAGTGCAGGCATTA
TTAGCATTAGTACGAAGAGTTTCTCGCCATCGGATACACCTCACGAGGTA
GGTTCCTCTTTGTGAAACCTTGATAGACCTTGATAGACCTTGATAGACCT
TGATAGACCTTGATAGCCGCGACGTGAAGCATAAATACTATCAGGCAGCG
TAGACTACTATTTAAAGGGATG
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Coding sequence (CDS) from alignment at P-canaliculata_contig9937:5965..9986-

>mRNA_P-canaliculata_contig9937.24050.1 ID=mRNA_P-canaliculata_contig9937.24050.1|Name=mRNA_P-canaliculata_contig9937.24050.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=2694bp|location=Sequence derived from alignment at P-canaliculata_contig9937:5965..9986- (Pelvetia canaliculata dioecious)
ATGGGGCTCAGCCTCAGGGACGAAGCCTCCCTGTTCCAGCTGGAATGCGA
TCGATCTCGCGCGCGATTTGGCGTGATCCTCATGTCTTTTCGCTTCGACC
CGCCCGTGGCCGCGGACGTCGTTGAGGACTTGGACGTGTCGCCGTGTACG
GGTACCAGTGCCGTGATGGGGCTCAGCCTCAGGGACGAAGCCTCCCTGTT
CCAGCTGGAATGCGATCGATCTCGCGCGCGATTTGGCGTGATCCTCATGT
CTTTTCGCTTCGACCCGCCCGTGGCCGCGGACGTCGTTGAGGACTTGGAC
GTGTCGCCGTGTACGGGTACCAGTGCCGTGCCAAAGTCGGTGGCTCCTCT
CTCGGCTGGCAGCGGAGGACGCGACCCCGAGGAGCAGGAAGCGGTGGCGC
TGGCTTGTGGCAGGGAGCAAAGCCGACCGGGGCCGGAAGTCGAGGACCCC
GTGTACATGAACGTGGCAGGGAACTTTGCGTGCCTTCTCCTCGACGATGA
CGTGCTGCAGCCCCCAAAGTCGGTGGCTCCTCTCTCGGCTGGCAGCGGAG
GACGCGACCCCGAGGAGCAGGAAGCGGTGGCGCTGGCTTGTGGCAGGGAG
CAAAGCCGACCGGGGCCGGAAGTCGAGGACCCCGTGTACATGAACGTGGC
AGGGAACTTTGCGTGCCTTCTCCTCGACGATGACGTGCTGCAGCCCGCGG
ACTTCGCCAAGGTGGAACCTCGCGAGCCCTCGAAGCCGTTTGTGGTAGCT
CCCTCGCGCCGAGGCCCGAACGACCCCGCCGACACCGAAGGCCTTCGCTC
TGCCCACAGGGACCCCGAGTACTCACGACGCTCCCCCAAGGCTCGGGATC
GCGGAACGCGCGAAGCACACACGAACGGGAGTGAACCTAGCCCCTCGAAC
CCTTCCGACTCGGCGCATGAGCGTGTCGTCGCAGCTCAAAACGCCGGCGG
CGCGAGCACGAGCGGAAGCGGCAGCAGCAATAGCAGCAGGAGCAACAACC
GTAGCAACAACAGCAGCAGCAACAGCAGCAGCGGTAACGGGGCCCCTTCG
AAAGAACTTCGTCGACACGCTGGCTCCTTCGGTGGCCTGGCCCAGCAAAT
CACCACCCTCGGGCGAGGAGGCGGCGGAGGCTTCGGCAAGGGAACCCCTC
CGCTGGGAAAGAGGCCACGGCCTCCAAGCACGGCCGCTTCCGTGGAGCGC
ACTCCACCGGCCGATCCGTCCAAGCAGCTCGAAGAGATGCCCCAGCAGCG
GTGGATGATGGGTAGGCTGCGACAAAAGCAAGAATTGAGAGGGGCGGGAG
GATCGGTGGCGGGCGGCAGCGGGAGCCGCGACGGCAGTAAGTCGAAACGG
GAAACGAGCGTAACGCGGCCGGGAGGCTGGAAGGACGGTTTCCGGCGCAG
CTCCGGCCTGAGCGGTCCGCGGCCAAGACCGTTTACGATTCCGGTATCGT
CGGGGCGATCGTGGGGAAGATCGTCGGTTCTTTTGGGGTGTGAGACAGGC
GGCGACGGAGCCGTGGGTGCAGCGAATGATGCAGATGGAGCTGAAGCGAC
ATTTTTTGTCTCGAGGGGCAACTTACGACCGGCGCTCGCTTCCGACGAGG
AAGGAGATGGGGCGTTCATGAAAATCGACTCCAGATACAATGTCGCAATC
TACGGGAAAGGCTCTGGCGAGGGGACGTCGTTCTGGCAGCCTTAGGCGGA
CTTCGCCAAGGTGGAACCTCGCGAGCCCTCGAAGCCGTTTGTGGTAGCTC
CCTCGCGCCGAGGCCCGAACGACCCCGCCGACACCGAAGGCCTTCGCTCT
GCCCACAGGGACCCCGAGTACTCACGACGCTCCCCCAAGGCTCGGGATCG
CGGAACGCGCGAAGCACACACGAACGGGAGTGAACCTAGCCCCTCGAACC
CTTCCGACTCGGCGCATGAGCGTGTCGTCGCAGCTCAAAACGCCGGCGGC
GCGAGCACGAGCGGAAGCGGCAGCAGCAATAGCAGCAGGAGCAACAACCG
TAGCAACAACAGCAGCAGCAACAGCAGCAGCGGTAACGGGGCCCCTTCGA
AAGAACTTCGTCGACACGCTGGCTCCTTCGGTGGCCTGGCCCAGCAAATC
ACCACCCTCGGGCGAGGAGGCGGCGGAGGCTTCGGCAAGGGAACCCCTCC
GCTGGGAAAGAGGCCACGGCCTCCAAGCACGGCCGCTTCCGTGGAGCGCA
CTCCACCGGCCGATCCGTCCAAGCAGCTCGAAGAGATGCCCCAGCAGCGG
TGGATGATGGGTAGGCTGCGACAAAAGCAAGAATTGAGAGGGGCGGGAGG
ATCGGTGGCGGGCGGCAGCGGGAGCCGCGACGGCAGTAAGTCGAAACGGG
AAACGAGCGTAACGCGGCCGGGAGGCTGGAAGGACGGTTTCCGGCGCAGC
TCCGGCCTGAGCGGTCCGCGGCCAAGACCGTTTACGATTCCGGTATCGTC
GGGGCGATCGTGGGGAAGATCGTCGGTTCTTTTGGGGTGTGAGACAGGCG
GCGACGGAGCCGTGGGTGCAGCGAATGATGCAGATGGAGCTGAAGCGACA
TTTTTTGTCTCGAGGGGCAACTTACGACCGGCGCTCGCTTCCGACGAGGA
AGGAGATGGGGCGTTCATGAAAATCGACTCCAGATACAATGTCGCAATCT
ACGGGAAAGGCTCTGGCGAGGGGACGTCGTTCTGGCAGCCTTAG
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