Homology
BLAST of mRNA_P-canaliculata_contig9937.24050.1 vs. uniprot
Match:
D7G3K7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3K7_ECTSI)
HSP 1 Score: 128 bits (321), Expect = 2.810e-27
Identity = 71/125 (56.80%), Postives = 90/125 (72.00%), Query Frame = 1
Query: 1 PVLASKEFEVHDVMGLSLRDEASLFQLECDRSRARFGVILMSFRFDPPVAADVVEDLDVSPCTGTSAVPKSVAPLSAGSGGRDPEEQEAVALACGREQSRPGPEVEDPVYMNVAGNFACLLLDDD 375
PVLAS EFEVHDV+GLSLR+ AS+FQLECDRSRAR+G+IL++FRFDPPVAADV+ LD G +++P+ V A G + E+ A +Q+ EV +PVY+NV G+FACLLLDDD
Sbjct: 118 PVLASVEFEVHDVIGLSLREGASVFQLECDRSRARYGIILLAFRFDPPVAADVLGALDG---VGLASLPRGVT-TPADQGHDEGEKAPAWGAPEAGQQAEREVEVAEPVYINVEGHFACLLLDDD 238
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9937.24050.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 1
0 1 Expect = 2.81e-27 / Id = 56.80 Sequence D7G3K7_ECTSI
Match Name E-value Identity Description
D7G3K7_ECTSI 2.810e-27 56.80 Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Ec32 ortholog description C2 domain Ec32 ortholog Ec-19_005030.1 Hectar predicted targeting category other localisation Exons 4 Model size 2348 Cds size 1347 Stop 1 Start 1
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622817353.7291477-UTR-P-canaliculata_contig9937:5964..6926 1622817353.7291477-UTR-P-canaliculata_contig9937:5964..6926 Pelvetia canaliculata dioecious UTR P-canaliculata_contig9937 5965..6926 - 1693495242.375825-UTR-P-canaliculata_contig9937:5964..6926 1693495242.375825-UTR-P-canaliculata_contig9937:5964..6926 Pelvetia canaliculata dioecious UTR P-canaliculata_contig9937 5965..6926 - 1622817353.7769024-UTR-P-canaliculata_contig9937:9518..9530 1622817353.7769024-UTR-P-canaliculata_contig9937:9518..9530 Pelvetia canaliculata dioecious UTR P-canaliculata_contig9937 9519..9530 - 1693495242.4256692-UTR-P-canaliculata_contig9937:9518..9530 1693495242.4256692-UTR-P-canaliculata_contig9937:9518..9530 Pelvetia canaliculata dioecious UTR P-canaliculata_contig9937 9519..9530 - 1622817353.788051-UTR-P-canaliculata_contig9937:9959..9986 1622817353.788051-UTR-P-canaliculata_contig9937:9959..9986 Pelvetia canaliculata dioecious UTR P-canaliculata_contig9937 9960..9986 - 1693495242.4428935-UTR-P-canaliculata_contig9937:9959..9986 1693495242.4428935-UTR-P-canaliculata_contig9937:9959..9986 Pelvetia canaliculata dioecious UTR P-canaliculata_contig9937 9960..9986 -
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622817353.7402053-CDS-P-canaliculata_contig9937:6926..7925 1622817353.7402053-CDS-P-canaliculata_contig9937:6926..7925 Pelvetia canaliculata dioecious CDS P-canaliculata_contig9937 6927..7925 - 1693495242.3849611-CDS-P-canaliculata_contig9937:6926..7925 1693495242.3849611-CDS-P-canaliculata_contig9937:6926..7925 Pelvetia canaliculata dioecious CDS P-canaliculata_contig9937 6927..7925 - 1622817353.7514064-CDS-P-canaliculata_contig9937:8620..8803 1622817353.7514064-CDS-P-canaliculata_contig9937:8620..8803 Pelvetia canaliculata dioecious CDS P-canaliculata_contig9937 8621..8803 - 1693495242.398734-CDS-P-canaliculata_contig9937:8620..8803 1693495242.398734-CDS-P-canaliculata_contig9937:8620..8803 Pelvetia canaliculata dioecious CDS P-canaliculata_contig9937 8621..8803 - 1622817353.7657316-CDS-P-canaliculata_contig9937:9353..9518 1622817353.7657316-CDS-P-canaliculata_contig9937:9353..9518 Pelvetia canaliculata dioecious CDS P-canaliculata_contig9937 9354..9518 - 1693495242.4120207-CDS-P-canaliculata_contig9937:9353..9518 1693495242.4120207-CDS-P-canaliculata_contig9937:9353..9518 Pelvetia canaliculata dioecious CDS P-canaliculata_contig9937 9354..9518 -
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig9937.24050.1
>prot_P-canaliculata_contig9937.24050.1 ID=prot_P-canaliculata_contig9937.24050.1|Name=mRNA_P-canaliculata_contig9937.24050.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=449bp
MGLSLRDEASLFQLECDRSRARFGVILMSFRFDPPVAADVVEDLDVSPCT back to top mRNA from alignment at P-canaliculata_contig9937:5965..9986-
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig9937.24050.1 ID=mRNA_P-canaliculata_contig9937.24050.1|Name=mRNA_P-canaliculata_contig9937.24050.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=4022bp|location=Sequence derived from alignment at P-canaliculata_contig9937:5965..9986- (Pelvetia canaliculata dioecious)CCGGTATTGGCCAGCAAGGAGTTTGAG GTGAGGGAAATATTGTTTTCGGT
CATCCGGTGCCACGAGAGACAATGAGTCACACCATCGCACCACTGTTGGT
GTACTGCGTATGGCTGTCTGCTCCCCTCCCCGTTATGCACGATCTGCATA
CAGGAGTAGTAGCACATCCAAGAGGACCGTTCGCCTGCCAATGCCCCGAG
CACCTCGGCCGGGTAGTCTGGAGTTTACGTGTGTTGGGAAGCGGTGCGAA
TTCATGAGCCCCAAGCCCGGCATCGATCCGCCTACGGATCCGGATTGCGG
CCCCCAGGCGACCCTACCACCCCCCTTTCGGGCAATCTAATTGCCTGGTT
CGAAAAAGCTGTGCAATGGATGTTTCGTGCGTCCGAATTGAGCGTTTCCG
TTGCGATTCGGTTCTCTTGCCGAATGTATTCGGTGGGTTTTGGCCGACTG
TCCCAGGTTCACGACGTC ATGGGGCTCAGCCTCAGGGACGAAGCCTCCCT
GTTCCAGCTGGAATGCGATCGATCTCGCGCGCGATTTGGCGTGATCCTCA
TGTCTTTTCGCTTCGACCCGCCCGTGGCCGCGGACGTCGTTGAGGACTTG
GACGTGTCGCCGTGTACGGGTACCAGTGCCGTG GTAAGAAAGGTCGATTA
TAGGCCGCTCGCGTAGCGACGGCCAAAACTTGAATGGTTGATTTTTCTTT
TTTTCTTGTTTTTTAAAGGGTCTAAAGGAGGGCGGGGGGGGGGGGGGGCT
AGCGCACTTTTTTTTGGTTAACAGCTAGGGCCGAGTTTAAAAAACTTTCA
AAGGTATGTTGCCGGNNNNNNNNNNTTTTTGTTGTTTTTTGTTTTGTGGT
GTGGGTAGGGGGGGGGGGGGGGGGGGGGGTGGGGTGGTGGGGGCTAGCGC
ACTTCTTTTTGGTGAAACGATCAGTCGATCTTTAAAAGATCTTCAAAAGT
ATATAGCCGGGAGAGCGAGTGGATTGGCACCGTATCGTCGCAAGCATCCA
GCATCCAGCATCCAGCAGTGCAACGGTCCAAGGCCTGAAAGACTTTTCGC
CAATAGCGGTGAAACAAAGATGATACAGTACAAGCTAGTAATTTAATGCA
TGTCGCACGCGCTTCACCTCCATTGTGCAAGGAAGCATGGTACGCGTTTT
GGTGCGTCCGTCTCGTGTGCTTTCTCCCCACAGCCAAAGTCGGTGGCTCC
TCTCTCGGCTGGCAGCGGAGGACGCGACCCCGAGGAGCAGGAAGCGGTGG
CGCTGGCTTGTGGCAGGGAGCAAAGCCGACCGGGGCCGGAAGTCGAGGAC
CCCGTGTACATGAACGTGGCAGGGAACTTTGCGTGCCTTCTCCTCGACGA
TGACGTGCTGCAGCCC GTGAGCGAGTACCGGCAGATAGCGCCGTAATAAT
ATTTCGACAAGTTCCCCTCTCGTGCTTTCTACAGGTTTCTAAGCATATTT
TGAGATGCCGGTATTTGCCTATTTTGCAGGTAGGCGCGTGACAAAACCAC
TTTACCCTTTTGGTCATTTCCGAGGCACACACATATTCGATATGTAGCTA
CTTATATACTTGTACTTACCCTTGCGGTGGGAATCAGCCTATTCATTATA
TTAGCCCTTACACAATATACAGTATATATCATATGTCTCAAATCTATTGG
TTAGCAGGAAGCTCGGATTCCGGAAATGGACCCCAAACCTCTTCTGATCC
ACAAGATTGCTCGGTTTATGTCTCGACTTCTCCGCAGTGCCATGAGTTTC
TTCAAACTAGACTCCGTCTCGGGATGGCAAGGCTACGGAGATTTCGCTGC
CGATACAGTCCACGAGCAAGAGCTTGCTTACCTCCCGAGGCGTATATTGA
GCGGAATCCGATCATTTGTACTATCGTTATTCATAATATTGATACGAGCA
GAACCCGATCATTTGTACTACTACAGAGAGATGATCAACACGTCGCTCGT
CTCGGCTGAAACGCCCCAACTATCACACGACACGACATGACACGACACTC
ATCCCCCCGGCTAAACACATTGTCGCCGCCCACCCGGTCACGAACCCTTT
CCACGTAGCAGGCGGACTTCGCCAAGGTGGAACCTCGCGAGCCCTCGAAG
CCGTTTGTGGTAGCTCCCTCGCGCCGAGGCCCGAACGACCCCGCCGACAC
CGAAGGCCTTCGCTCTGCCCACAGGGACCCCGAGTACTCACGACGCTCCC
CCAAGGCTCGGGATCGCGGAACGCGCGAAGCACACACGAACGGGAGTGAA
CCTAGCCCCTCGAACCCTTCCGACTCGGCGCATGAGCGTGTCGTCGCAGC
TCAAAACGCCGGCGGCGCGAGCACGAGCGGAAGCGGCAGCAGCAATAGCA
GCAGGAGCAACAACCGTAGCAACAACAGCAGCAGCAACAGCAGCAGCGGT
AACGGGGCCCCTTCGAAAGAACTTCGTCGACACGCTGGCTCCTTCGGTGG
CCTGGCCCAGCAAATCACCACCCTCGGGCGAGGAGGCGGCGGAGGCTTCG
GCAAGGGAACCCCTCCGCTGGGAAAGAGGCCACGGCCTCCAAGCACGGCC
GCTTCCGTGGAGCGCACTCCACCGGCCGATCCGTCCAAGCAGCTCGAAGA
GATGCCCCAGCAGCGGTGGATGATGGGTAGGCTGCGACAAAAGCAAGAAT
TGAGAGGGGCGGGAGGATCGGTGGCGGGCGGCAGCGGGAGCCGCGACGGC
AGTAAGTCGAAACGGGAAACGAGCGTAACGCGGCCGGGAGGCTGGAAGGA
CGGTTTCCGGCGCAGCTCCGGCCTGAGCGGTCCGCGGCCAAGACCGTTTA
CGATTCCGGTATCGTCGGGGCGATCGTGGGGAAGATCGTCGGTTCTTTTG
GGGTGTGAGACAGGCGGCGACGGAGCCGTGGGTGCAGCGAATGATGCAGA
TGGAGCTGAAGCGACATTTTTTGTCTCGAGGGGCAACTTACGACCGGCGC
TCGCTTCCGACGAGGAAGGAGATGGGGCGTTCATGAAAATCGACTCCAGA
TACAATGTCGCAATCTACGGGAAAGGCTCTGGCGAGGGGACGTCGTTCTG
GCAGCCTTAG CTTTTGCTTTGGAGGAGGAAGTGGGAAGCTTGCTGCAGTA
TTGCTCGTGGCTGTTCTGTAGCCCTGTGCCTGGCGGCAATTTTGCCTTCG
ACCGGTCGACACTCTTGTTTATAGTCTTTAACACTACGGAAACTCTGCGA
TATAGTTAGGCGCCGAAGGCGTTTATATTAGGGAACCATGCAATCGGTCG
ACGTGTGGTTTATTTGCATCGAGAAAACCGTTTCATGTGCACAAGATATC
ATATGTTCATCTACTAGTGTACCGTATTATCTATGAAAAAGCCGCTGCAT
CTCTTATTGGGTTGGTTGCGCGAGCCCACCTCATTTCGATAGGGGCGTAA
ATGCGGTCAAGTGTAGTCCAAGTGTATTTGGTTACGCCCGCTGTGCGCTG
GGCTCCTCGTGACGTCTGAGGGCTATGTTTGCGTGTAAGTTCCATTCTCA
CAGCGCCGGCGAACTGCGGCCCTAAGCCCTCTTTTTAGTGGTATGCATAG
CCCGCCTGGTGTCTTTTCTTCTATGTAACACGAAGAGGTTGATCGATAAC
TGTTGAGAGAGGTTTTGGTCTCTTTTGTGCGAGAGTCATAAATAGCGGGT
CAGATGATCTCAGGGATTAAACGACCGGCCGCTGCCACCCCCTCAACAAG
GCCGTACACCAGGGAAGAGAAAAGGATGGACACTCGGCGCGTGGAGACTT
CAGCCCGTCACTCGTAGTTGGCGCGGAGAAGACTTGCCCCACGATAGGCT
ACGGTTACTAATACTATTTCTTTTGACGCCAGGGTGTAGTGCAGGCATTA
TTAGCATTAGTACGAAGAGTTTCTCGCCATCGGATACACCTCACGAGGTA
GGTTCCTCTTTGTGAAACCTTGATAGACCTTGATAGACCTTGATAGACCT
TGATAGACCTTGATAGCCGCGACGTGAAGCATAAATACTATCAGGCAGCG
TAGACTACTATTTAAAGGGATG back to top Coding sequence (CDS) from alignment at P-canaliculata_contig9937:5965..9986-
>mRNA_P-canaliculata_contig9937.24050.1 ID=mRNA_P-canaliculata_contig9937.24050.1|Name=mRNA_P-canaliculata_contig9937.24050.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=2694bp|location=Sequence derived from alignment at P-canaliculata_contig9937:5965..9986- (Pelvetia canaliculata dioecious) back to top