mRNA_P-canaliculata_contig99366.24048.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Homology

BLAST of mRNA_P-canaliculata_contig99366.24048.1 vs. uniprot
Match: A0A2G3BUH6_CAPCH (Uncharacterized protein n=1 Tax=Capsicum chinense TaxID=80379 RepID=A0A2G3BUH6_CAPCH)

HSP 1 Score: 105 bits (263), Expect = 8.550e-25
Identity = 65/118 (55.08%), Postives = 70/118 (59.32%), Query Frame = 3

Query:  132 LLPFSTTGLSPPLVQLSTASSNFRNPSDCPTTP*TEIYGLGCFRFARRY*GNRFCFLFLQLLRCFSSLGSLAPAYIFSRSFSWVAPSRTLSDQCLFPTPRDISSVTTSFFAFVYLGIH 485
            L+  S TGLSP  VQ S   +   N   C   P    +GLGC  FARRY GNRFCFLFL LLRCFSS G L PA+ FS S S   P R   D CLF TPR ISS+TT F     LGIH
Sbjct:    9 LVMLSATGLSPSRVQHSGCFAKQHNA--CIALPQPRFHGLGCSHFARRYYGNRFCFLFLWLLRCFSSPGCLLPAHGFSSS-SKGCPIRESPDLCLFSTPRSISSITTPFLVSGCLGIH 123

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BLAST of mRNA_P-canaliculata_contig99366.24048.1 vs. uniprot
Match: B0MI66_ANACD (Uncharacterized protein (Fragment) n=1 Tax=Anaerostipes caccae (strain DSM 14662 / CCUG 47493 / JCM 13470 / NCIMB 13811 / L1-92) TaxID=411490 RepID=B0MI66_ANACD)

HSP 1 Score: 99.4 bits (246), Expect = 9.080e-24
Identity = 60/111 (54.05%), Postives = 74/111 (66.67%), Query Frame = 1

Query:    1 GVLFTFPSRYYSLSVTH*YLALRGGPR*FTRNSTGSVLLGIQSGYFRFRLQDFHLLWCSFQLLRLTFVIRPTVPL-PHKPKFMV*AVSASLAATKEIAFAFSSSSY*DVSV 330
            GVLFTFPS+YY+LSVT  YLALRGGPR F +  +  V+L I  GYFR R++ FH LW +F   R   +  PT+   P   + +V A+S SLAAT EI  +FSSS Y DVSV
Sbjct:   16 GVLFTFPSQYYALSVTKEYLALRGGPRSFPQGFSCLVVLWILLGYFRLRIRGFHPLWPAFPG-RSPVLHNPTLQSEPQDARILVWALSISLAATLEIEVSFSSSGYLDVSV 125

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BLAST of mRNA_P-canaliculata_contig99366.24048.1 vs. uniprot
Match: A4QMB9_PINKO (ORF124 n=1 Tax=Pinus koraiensis TaxID=88728 RepID=A4QMB9_PINKO)

HSP 1 Score: 95.1 bits (235), Expect = 3.210e-22
Identity = 50/80 (62.50%), Postives = 60/80 (75.00%), Query Frame = 2

Query:  248 FRLFPLRSPLLRKSLLLSLPPATKMFQFAGFARSCLYIQQVVQLGCPISDTLGSMLVSNSPRHFVGHHVLLRLCVPRYPP 487
            FRL P RSPLLR+SLLLS+P ATKMFQFA  + +C +IQQ ++ G   S   GSML+ NSP+HFV +H L RL VPRYPP
Sbjct:   46 FRLLPFRSPLLRESLLLSIPLATKMFQFARLSLACPWIQQQLK-GLTYSGISGSMLIFNSPKHFVAYHALPRLWVPRYPP 124

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BLAST of mRNA_P-canaliculata_contig99366.24048.1 vs. uniprot
Match: A0A0V0GQ11_SOLCH (Putative ovule protein (Fragment) n=1 Tax=Solanum chacoense TaxID=4108 RepID=A0A0V0GQ11_SOLCH)

HSP 1 Score: 89.7 bits (221), Expect = 1.180e-19
Identity = 67/161 (41.61%), Postives = 81/161 (50.31%), Query Frame = 1

Query:    1 GVLFTFPSRYYSLSVTH*YLALRGGPR*FTRNSTGSVLLGIQSGYFRFRLQDFHLLWCSFQLLRLTFVIR---PTVPLPHKPKFMV*AVSASLAATK-----------EIAFAFSSSSY*DVSVRWVRSLLPIYS-AGRSVGLPHLGHSRINACFQLPETF 438
            G    FP    SLSVT  YLALRGGPR F R+ T   LLGIQS Y  F LQDF+LLW SFQL RLTF++    PT P+P +       + +SL A +           ++   FSS          +RSL P Y  +G+  GLPH   S        PE F
Sbjct:    1 GFFSLFPRGTCSLSVTQEYLALRGGPRXFNRDFTCPDLLGIQSTYSGFXLQDFYLLWYSFQLFRLTFLVSFDCPTTPIPLRI-----GLGSSLFARRYSGNRFFFLFLQLLRCFSS----------LRSLFPAYIFSGQYAGLPHSDTSGSMLASSSPERF 146

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BLAST of mRNA_P-canaliculata_contig99366.24048.1 vs. uniprot
Match: M1DI68_SOLTU (Uncharacterized protein n=2 Tax=Solanum tuberosum TaxID=4113 RepID=M1DI68_SOLTU)

HSP 1 Score: 91.3 bits (225), Expect = 2.320e-19
Identity = 49/80 (61.25%), Postives = 58/80 (72.50%), Query Frame = 2

Query:  248 FRLFPLRSPLLRKSLLLSLPPATKMFQFAGFARSCLYIQQVVQLGCPISDTLGSMLVSNSPRHFVGHHVLLRLCVPRYPP 487
            FRL P RSPLLR+SLLLS P ATKMFQFA  + +C +IQQ  +   P S   GSML+ NSP+HFV ++ L RL VPRYPP
Sbjct:   48 FRLLPFRSPLLRESLLLSFPLATKMFQFARLSLACPWIQQQFER-LPYSGISGSMLIFNSPKHFVDYYALPRLWVPRYPP 126

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BLAST of mRNA_P-canaliculata_contig99366.24048.1 vs. uniprot
Match: A0A5K1HUG9_9MAGN (Uncharacterized protein (Fragment) n=1 Tax=Nymphaea colorata TaxID=210225 RepID=A0A5K1HUG9_9MAGN)

HSP 1 Score: 86.7 bits (213), Expect = 3.380e-19
Identity = 48/80 (60.00%), Postives = 56/80 (70.00%), Query Frame = 2

Query:  248 FRLFPLRSPLLRKSLLLSLPPATKMFQFAGFARSCLYIQQVVQLGCPISDTLGSMLVSNSPRHFVGHHVLLRLCVPRYPP 487
            FRL P RSPLLR+SLLLS P ATKMFQFA  + +C +IQQ  +     S   GSML+ NSP+HFV  + L RL VPRYPP
Sbjct:   22 FRLLPFRSPLLRESLLLSFPLATKMFQFARLSLACPWIQQQFER-LTYSGISGSMLIFNSPKHFVACYALPRLWVPRYPP 100

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BLAST of mRNA_P-canaliculata_contig99366.24048.1 vs. uniprot
Match: A0A5N6P624_9ASTR (Uncharacterized protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6P624_9ASTR)

HSP 1 Score: 87.8 bits (216), Expect = 3.780e-19
Identity = 48/80 (60.00%), Postives = 57/80 (71.25%), Query Frame = 2

Query:  248 FRLFPLRSPLLRKSLLLSLPPATKMFQFAGFARSCLYIQQVVQLGCPISDTLGSMLVSNSPRHFVGHHVLLRLCVPRYPP 487
            FRL P RSPLL +SLLLS P ATKMFQFA F+ +C +IQQ  +     S   GSML+ NSP+HFV ++ L RL VPRYPP
Sbjct:   65 FRLLPFRSPLLWESLLLSFPLATKMFQFARFSLACPWIQQQFER-LTYSGISGSMLIFNSPKHFVAYYALPRLWVPRYPP 143

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BLAST of mRNA_P-canaliculata_contig99366.24048.1 vs. uniprot
Match: A0A3P6DF78_BRACM (Uncharacterized protein n=1 Tax=Brassica campestris TaxID=3711 RepID=A0A3P6DF78_BRACM)

HSP 1 Score: 85.9 bits (211), Expect = 6.950e-19
Identity = 47/80 (58.75%), Postives = 56/80 (70.00%), Query Frame = 2

Query:  248 FRLFPLRSPLLRKSLLLSLPPATKMFQFAGFARSCLYIQQVVQLGCPISDTLGSMLVSNSPRHFVGHHVLLRLCVPRYPP 487
            FRL P RSPLLR+SLLLS P ATKMFQFA  + +C +IQQ  +     S   GS L+ NSP+HFV ++ L RL VPRYPP
Sbjct:   23 FRLLPFRSPLLRESLLLSFPLATKMFQFARLSLACPWIQQQFKR-LTYSGISGSTLIFNSPKHFVAYYALPRLWVPRYPP 101

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BLAST of mRNA_P-canaliculata_contig99366.24048.1 vs. uniprot
Match: A0A5N6L973_9ASTR (Uncharacterized protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6L973_9ASTR)

HSP 1 Score: 88.6 bits (218), Expect = 8.770e-19
Identity = 48/80 (60.00%), Postives = 57/80 (71.25%), Query Frame = 2

Query:  248 FRLFPLRSPLLRKSLLLSLPPATKMFQFAGFARSCLYIQQVVQLGCPISDTLGSMLVSNSPRHFVGHHVLLRLCVPRYPP 487
            FRL P RSPLLR+SLLLS P ATKMFQFA  + +C +IQQ  +     S   GSML+ NSP+HFV ++ L RL VPRYPP
Sbjct:   67 FRLLPFRSPLLRESLLLSFPLATKMFQFARLSLACPWIQQQFER-LTYSGISGSMLIFNSPKHFVAYYALPRLWVPRYPP 145

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BLAST of mRNA_P-canaliculata_contig99366.24048.1 vs. uniprot
Match: A0A3P6D603_BRACM (Uncharacterized protein n=1 Tax=Brassica campestris TaxID=3711 RepID=A0A3P6D603_BRACM)

HSP 1 Score: 85.1 bits (209), Expect = 1.310e-18
Identity = 48/89 (53.93%), Postives = 59/89 (66.29%), Query Frame = 2

Query:  221 HYPINRNLWFRLFPLRSPLLRKSLLLSLPPATKMFQFAGFARSCLYIQQVVQLGCPISDTLGSMLVSNSPRHFVGHHVLLRLCVPRYPP 487
            H  +   L +RL P RSPLLR+SLLLS P ATKMFQFA  + +C +IQQ  +     S   GS L+ NSP+HFV ++ L RL VPRYPP
Sbjct:   12 HPSLTVLLRYRLLPFRSPLLRESLLLSFPLATKMFQFARLSLACPWIQQQFKR-LTYSGISGSTLIFNSPKHFVAYYALPRLWVPRYPP 99

The following BLAST results are available for this feature:

BLAST of mRNA_P-canaliculata_contig99366.24048.1 vs. uniprot

BLAST of mRNA_P-canaliculata_contig99366.24048.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25

ZOOM

x 1

POSITION

0


Match Name	E-value	Identity	Description
A0A2G3BUH6_CAPCH	8.550e-25	55.08	Uncharacterized protein n=1 Tax=Capsicum chinense ...	[more]
B0MI66_ANACD	9.080e-24	54.05	Uncharacterized protein (Fragment) n=1 Tax=Anaeros...	[more]
A4QMB9_PINKO	3.210e-22	62.50	ORF124 n=1 Tax=Pinus koraiensis TaxID=88728 RepID=...	[more]
A0A0V0GQ11_SOLCH	1.180e-19	41.61	Putative ovule protein (Fragment) n=1 Tax=Solanum ...	[more]
M1DI68_SOLTU	2.320e-19	61.25	Uncharacterized protein n=2 Tax=Solanum tuberosum ...	[more]
A0A5K1HUG9_9MAGN	3.380e-19	60.00	Uncharacterized protein (Fragment) n=1 Tax=Nymphae...	[more]
A0A5N6P624_9ASTR	3.780e-19	60.00	Uncharacterized protein n=1 Tax=Mikania micrantha ...	[more]
A0A3P6DF78_BRACM	6.950e-19	58.75	Uncharacterized protein n=1 Tax=Brassica campestri...	[more]
A0A5N6L973_9ASTR	8.770e-19	60.00	Uncharacterized protein n=1 Tax=Mikania micrantha ...	[more]
A0A3P6D603_BRACM	1.310e-18	53.93	Uncharacterized protein n=1 Tax=Brassica campestri...	[more]

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Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622817353.6872797-UTR-P-canaliculata_contig99366:55..374	1622817353.6872797-UTR-P-canaliculata_contig99366:55..374	Pelvetia canaliculata dioecious	UTR	P-canaliculata_contig99366 56..374 +
1693495242.356563-UTR-P-canaliculata_contig99366:55..374	1693495242.356563-UTR-P-canaliculata_contig99366:55..374	Pelvetia canaliculata dioecious	UTR	P-canaliculata_contig99366 56..374 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622817353.6980164-CDS-P-canaliculata_contig99366:374..542	1622817353.6980164-CDS-P-canaliculata_contig99366:374..542	Pelvetia canaliculata dioecious	CDS	P-canaliculata_contig99366 375..542 +
1693495242.366852-CDS-P-canaliculata_contig99366:374..542	1693495242.366852-CDS-P-canaliculata_contig99366:374..542	Pelvetia canaliculata dioecious	CDS	P-canaliculata_contig99366 375..542 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-canaliculata_contig99366.24048.1	prot_P-canaliculata_contig99366.24048.1	Pelvetia canaliculata dioecious	polypeptide	P-canaliculata_contig99366 375..542 +