mRNA_P-canaliculata_contig99366.24048.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig99366.24048.1 vs. uniprot
Match: A0A2G3BUH6_CAPCH (Uncharacterized protein n=1 Tax=Capsicum chinense TaxID=80379 RepID=A0A2G3BUH6_CAPCH) HSP 1 Score: 105 bits (263), Expect = 8.550e-25 Identity = 65/118 (55.08%), Postives = 70/118 (59.32%), Query Frame = 3 Query: 132 LLPFSTTGLSPPLVQLSTASSNFRNPSDCPTTP*TEIYGLGCFRFARRY*GNRFCFLFLQLLRCFSSLGSLAPAYIFSRSFSWVAPSRTLSDQCLFPTPRDISSVTTSFFAFVYLGIH 485
L+ S TGLSP VQ S + N C P +GLGC FARRY GNRFCFLFL LLRCFSS G L PA+ FS S S P R D CLF TPR ISS+TT F LGIH
Sbjct: 9 LVMLSATGLSPSRVQHSGCFAKQHNA--CIALPQPRFHGLGCSHFARRYYGNRFCFLFLWLLRCFSSPGCLLPAHGFSSS-SKGCPIRESPDLCLFSTPRSISSITTPFLVSGCLGIH 123
BLAST of mRNA_P-canaliculata_contig99366.24048.1 vs. uniprot
Match: B0MI66_ANACD (Uncharacterized protein (Fragment) n=1 Tax=Anaerostipes caccae (strain DSM 14662 / CCUG 47493 / JCM 13470 / NCIMB 13811 / L1-92) TaxID=411490 RepID=B0MI66_ANACD) HSP 1 Score: 99.4 bits (246), Expect = 9.080e-24 Identity = 60/111 (54.05%), Postives = 74/111 (66.67%), Query Frame = 1 Query: 1 GVLFTFPSRYYSLSVTH*YLALRGGPR*FTRNSTGSVLLGIQSGYFRFRLQDFHLLWCSFQLLRLTFVIRPTVPL-PHKPKFMV*AVSASLAATKEIAFAFSSSSY*DVSV 330
GVLFTFPS+YY+LSVT YLALRGGPR F + + V+L I GYFR R++ FH LW +F R + PT+ P + +V A+S SLAAT EI +FSSS Y DVSV
Sbjct: 16 GVLFTFPSQYYALSVTKEYLALRGGPRSFPQGFSCLVVLWILLGYFRLRIRGFHPLWPAFPG-RSPVLHNPTLQSEPQDARILVWALSISLAATLEIEVSFSSSGYLDVSV 125
BLAST of mRNA_P-canaliculata_contig99366.24048.1 vs. uniprot
Match: A4QMB9_PINKO (ORF124 n=1 Tax=Pinus koraiensis TaxID=88728 RepID=A4QMB9_PINKO) HSP 1 Score: 95.1 bits (235), Expect = 3.210e-22 Identity = 50/80 (62.50%), Postives = 60/80 (75.00%), Query Frame = 2 Query: 248 FRLFPLRSPLLRKSLLLSLPPATKMFQFAGFARSCLYIQQVVQLGCPISDTLGSMLVSNSPRHFVGHHVLLRLCVPRYPP 487
FRL P RSPLLR+SLLLS+P ATKMFQFA + +C +IQQ ++ G S GSML+ NSP+HFV +H L RL VPRYPP
Sbjct: 46 FRLLPFRSPLLRESLLLSIPLATKMFQFARLSLACPWIQQQLK-GLTYSGISGSMLIFNSPKHFVAYHALPRLWVPRYPP 124
BLAST of mRNA_P-canaliculata_contig99366.24048.1 vs. uniprot
Match: A0A0V0GQ11_SOLCH (Putative ovule protein (Fragment) n=1 Tax=Solanum chacoense TaxID=4108 RepID=A0A0V0GQ11_SOLCH) HSP 1 Score: 89.7 bits (221), Expect = 1.180e-19 Identity = 67/161 (41.61%), Postives = 81/161 (50.31%), Query Frame = 1 Query: 1 GVLFTFPSRYYSLSVTH*YLALRGGPR*FTRNSTGSVLLGIQSGYFRFRLQDFHLLWCSFQLLRLTFVIR---PTVPLPHKPKFMV*AVSASLAATK-----------EIAFAFSSSSY*DVSVRWVRSLLPIYS-AGRSVGLPHLGHSRINACFQLPETF 438
G FP SLSVT YLALRGGPR F R+ T LLGIQS Y F LQDF+LLW SFQL RLTF++ PT P+P + + +SL A + ++ FSS +RSL P Y +G+ GLPH S PE F
Sbjct: 1 GFFSLFPRGTCSLSVTQEYLALRGGPRXFNRDFTCPDLLGIQSTYSGFXLQDFYLLWYSFQLFRLTFLVSFDCPTTPIPLRI-----GLGSSLFARRYSGNRFFFLFLQLLRCFSS----------LRSLFPAYIFSGQYAGLPHSDTSGSMLASSSPERF 146
BLAST of mRNA_P-canaliculata_contig99366.24048.1 vs. uniprot
Match: M1DI68_SOLTU (Uncharacterized protein n=2 Tax=Solanum tuberosum TaxID=4113 RepID=M1DI68_SOLTU) HSP 1 Score: 91.3 bits (225), Expect = 2.320e-19 Identity = 49/80 (61.25%), Postives = 58/80 (72.50%), Query Frame = 2 Query: 248 FRLFPLRSPLLRKSLLLSLPPATKMFQFAGFARSCLYIQQVVQLGCPISDTLGSMLVSNSPRHFVGHHVLLRLCVPRYPP 487
FRL P RSPLLR+SLLLS P ATKMFQFA + +C +IQQ + P S GSML+ NSP+HFV ++ L RL VPRYPP
Sbjct: 48 FRLLPFRSPLLRESLLLSFPLATKMFQFARLSLACPWIQQQFER-LPYSGISGSMLIFNSPKHFVDYYALPRLWVPRYPP 126
BLAST of mRNA_P-canaliculata_contig99366.24048.1 vs. uniprot
Match: A0A5K1HUG9_9MAGN (Uncharacterized protein (Fragment) n=1 Tax=Nymphaea colorata TaxID=210225 RepID=A0A5K1HUG9_9MAGN) HSP 1 Score: 86.7 bits (213), Expect = 3.380e-19 Identity = 48/80 (60.00%), Postives = 56/80 (70.00%), Query Frame = 2 Query: 248 FRLFPLRSPLLRKSLLLSLPPATKMFQFAGFARSCLYIQQVVQLGCPISDTLGSMLVSNSPRHFVGHHVLLRLCVPRYPP 487
FRL P RSPLLR+SLLLS P ATKMFQFA + +C +IQQ + S GSML+ NSP+HFV + L RL VPRYPP
Sbjct: 22 FRLLPFRSPLLRESLLLSFPLATKMFQFARLSLACPWIQQQFER-LTYSGISGSMLIFNSPKHFVACYALPRLWVPRYPP 100
BLAST of mRNA_P-canaliculata_contig99366.24048.1 vs. uniprot
Match: A0A5N6P624_9ASTR (Uncharacterized protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6P624_9ASTR) HSP 1 Score: 87.8 bits (216), Expect = 3.780e-19 Identity = 48/80 (60.00%), Postives = 57/80 (71.25%), Query Frame = 2 Query: 248 FRLFPLRSPLLRKSLLLSLPPATKMFQFAGFARSCLYIQQVVQLGCPISDTLGSMLVSNSPRHFVGHHVLLRLCVPRYPP 487
FRL P RSPLL +SLLLS P ATKMFQFA F+ +C +IQQ + S GSML+ NSP+HFV ++ L RL VPRYPP
Sbjct: 65 FRLLPFRSPLLWESLLLSFPLATKMFQFARFSLACPWIQQQFER-LTYSGISGSMLIFNSPKHFVAYYALPRLWVPRYPP 143
BLAST of mRNA_P-canaliculata_contig99366.24048.1 vs. uniprot
Match: A0A3P6DF78_BRACM (Uncharacterized protein n=1 Tax=Brassica campestris TaxID=3711 RepID=A0A3P6DF78_BRACM) HSP 1 Score: 85.9 bits (211), Expect = 6.950e-19 Identity = 47/80 (58.75%), Postives = 56/80 (70.00%), Query Frame = 2 Query: 248 FRLFPLRSPLLRKSLLLSLPPATKMFQFAGFARSCLYIQQVVQLGCPISDTLGSMLVSNSPRHFVGHHVLLRLCVPRYPP 487
FRL P RSPLLR+SLLLS P ATKMFQFA + +C +IQQ + S GS L+ NSP+HFV ++ L RL VPRYPP
Sbjct: 23 FRLLPFRSPLLRESLLLSFPLATKMFQFARLSLACPWIQQQFKR-LTYSGISGSTLIFNSPKHFVAYYALPRLWVPRYPP 101
BLAST of mRNA_P-canaliculata_contig99366.24048.1 vs. uniprot
Match: A0A5N6L973_9ASTR (Uncharacterized protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6L973_9ASTR) HSP 1 Score: 88.6 bits (218), Expect = 8.770e-19 Identity = 48/80 (60.00%), Postives = 57/80 (71.25%), Query Frame = 2 Query: 248 FRLFPLRSPLLRKSLLLSLPPATKMFQFAGFARSCLYIQQVVQLGCPISDTLGSMLVSNSPRHFVGHHVLLRLCVPRYPP 487
FRL P RSPLLR+SLLLS P ATKMFQFA + +C +IQQ + S GSML+ NSP+HFV ++ L RL VPRYPP
Sbjct: 67 FRLLPFRSPLLRESLLLSFPLATKMFQFARLSLACPWIQQQFER-LTYSGISGSMLIFNSPKHFVAYYALPRLWVPRYPP 145
BLAST of mRNA_P-canaliculata_contig99366.24048.1 vs. uniprot
Match: A0A3P6D603_BRACM (Uncharacterized protein n=1 Tax=Brassica campestris TaxID=3711 RepID=A0A3P6D603_BRACM) HSP 1 Score: 85.1 bits (209), Expect = 1.310e-18 Identity = 48/89 (53.93%), Postives = 59/89 (66.29%), Query Frame = 2 Query: 221 HYPINRNLWFRLFPLRSPLLRKSLLLSLPPATKMFQFAGFARSCLYIQQVVQLGCPISDTLGSMLVSNSPRHFVGHHVLLRLCVPRYPP 487
H + L +RL P RSPLLR+SLLLS P ATKMFQFA + +C +IQQ + S GS L+ NSP+HFV ++ L RL VPRYPP
Sbjct: 12 HPSLTVLLRYRLLPFRSPLLRESLLLSFPLATKMFQFARLSLACPWIQQQFKR-LTYSGISGSTLIFNSPKHFVAYYALPRLWVPRYPP 99 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig99366.24048.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig99366.24048.1 >prot_P-canaliculata_contig99366.24048.1 ID=prot_P-canaliculata_contig99366.24048.1|Name=mRNA_P-canaliculata_contig99366.24048.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=56bp MFQFAGFARSCLYIQQVVQLGCPISDTLGSMLVSNSPRHFVGHHVLLRLCback to top mRNA from alignment at P-canaliculata_contig99366:56..542+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig99366.24048.1 ID=mRNA_P-canaliculata_contig99366.24048.1|Name=mRNA_P-canaliculata_contig99366.24048.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=487bp|location=Sequence derived from alignment at P-canaliculata_contig99366:56..542+ (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig99366:56..542+ >mRNA_P-canaliculata_contig99366.24048.1 ID=mRNA_P-canaliculata_contig99366.24048.1|Name=mRNA_P-canaliculata_contig99366.24048.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=336bp|location=Sequence derived from alignment at P-canaliculata_contig99366:56..542+ (Pelvetia canaliculata dioecious)back to top |