mRNA_P-canaliculata_contig99288.24042.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig99288.24042.1
Unique NamemRNA_P-canaliculata_contig99288.24042.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
[Close]
BLAST of mRNA_P-canaliculata_contig99288.24042.1 vs. uniprot
Match: UPI001D2541A4 (nitric oxide synthase oxygenase n=1 Tax=Waterburya agarophytonicola TaxID=2886916 RepID=UPI001D2541A4)

HSP 1 Score: 142 bits (359), Expect = 4.150e-37
Identity = 71/99 (71.72%), Postives = 82/99 (82.83%), Query Frame = 1 
Query:   55 FNSGAVAFLCGPQPYMSAVRSHLIAIGWAESAIHQELFSSKLDEDGNAEALVQRPAIKVAGGI*SIESDRFEVQPVGDVAKEAQTYLKQCYLERGLPEV 351
            +  GAVAFLCGPQ YM AVRSHL+  GWA+ AI QELFSSKLDE+GNAE   +R A++VAGGI  IES  F+VQPVG+VAKEA+ YLKQCY+ERGLPEV
Sbjct:  724 YKEGAVAFLCGPQVYMDAVRSHLLEAGWADDAIRQELFSSKLDEEGNAEP-PKRAAVQVAGGIKGIESYSFDVQPVGEVAKEAEAYLKQCYVERGLPEV 821
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BLAST of mRNA_P-canaliculata_contig99288.24042.1 vs. uniprot
Match: K9VZW9_9CYAN (Nitric oxide synthase NOS n=2 Tax=Oscillatoriales TaxID=1150 RepID=K9VZW9_9CYAN)

HSP 1 Score: 124 bits (311), Expect = 1.230e-30
Identity = 60/100 (60.00%), Postives = 75/100 (75.00%), Query Frame = 1 
Query:   55 FNSGAVAFLCGPQPYMSAVRSHLIAIGWAESAIHQELFSSKLDEDGNAEALV-QRPAIKVAGGI*SIESDRFEVQPVGDVAKEAQTYLKQCYLERGLPEV 351
            +  G VAF+CGPQP+M AVR +L   GW + AI QELFSSKL+EDGNA+  + QRPA+++AGGI  IE     VQP+  VAKEA+ +LKQCYLE+GL EV
Sbjct:  750 YTEGTVAFMCGPQPFMDAVRGYLQTAGWQDHAIRQELFSSKLNEDGNAQTPISQRPAVQLAGGITPIEQTSIYVQPINSVAKEAEVFLKQCYLEQGLAEV 849
[Close]
BLAST of mRNA_P-canaliculata_contig99288.24042.1 vs. uniprot
Match: A0A328IAN2_9CYAN (Nitric oxide synthase NOS (Fragment) n=1 Tax=Hapalosiphonaceae cyanobacterium JJU2 TaxID=2109628 RepID=A0A328IAN2_9CYAN)

HSP 1 Score: 119 bits (297), Expect = 9.490e-29
Identity = 58/100 (58.00%), Postives = 74/100 (74.00%), Query Frame = 1 
Query:   55 FNSGAVAFLCGPQPYMSAVRSHLIAIGWAESAIHQELFSSKLDEDGNAEALV-QRPAIKVAGGI*SIESDRFEVQPVGDVAKEAQTYLKQCYLERGLPEV 351
            +  G VAF+CGPQ YM AVR +L   GW   AI +ELFSSKLD+DGNA+ +V +RPA+++AGGI  +E D F V  VG V +EA+ +LKQCYLE+GL EV
Sbjct:  742 YTEGTVAFICGPQAYMDAVRGYLKQAGWPNVAIREELFSSKLDDDGNAQRVVPKRPAVQLAGGITPVEHDSFNVGAVGSVMEEAEVFLKQCYLEQGLNEV 841
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BLAST of mRNA_P-canaliculata_contig99288.24042.1 vs. uniprot
Match: A0A1Z4GX41_9CYAN (FHA domain containing protein n=2 Tax=Nostocales TaxID=1161 RepID=A0A1Z4GX41_9CYAN)

HSP 1 Score: 116 bits (291), Expect = 6.120e-28
Identity = 56/95 (58.95%), Postives = 73/95 (76.84%), Query Frame = 1 
Query:   70 VAFLCGPQPYMSAVRSHLIAIGWAESAIHQELFSSKLDEDGNAE-ALVQRPAIKVAGGI*SIESDRFEVQPVGDVAKEAQTYLKQCYLERGLPEV 351
            VAF+CGP+P+M  VRS+L   GW + AI QELFSSKL+E+GN + A+ QRPA+++AGGI  IE     VQP+  VA+EA+ +LKQCYLE+GL EV
Sbjct:  763 VAFMCGPEPFMDGVRSYLKTAGWPDCAIRQELFSSKLNEEGNVQTAIPQRPAVQLAGGITPIEQMSIYVQPINSVAQEAEVFLKQCYLEQGLAEV 857
[Close]
BLAST of mRNA_P-canaliculata_contig99288.24042.1 vs. uniprot
Match: A0A352AP46_9CYAN (Nitric oxide synthase NOS n=1 Tax=Cyanobacteria bacterium UBA9273 TaxID=2055791 RepID=A0A352AP46_9CYAN)

HSP 1 Score: 116 bits (290), Expect = 7.710e-28
Identity = 58/100 (58.00%), Postives = 73/100 (73.00%), Query Frame = 1 
Query:   55 FNSGAVAFLCGPQPYMSAVRSHLIAIGWAESAIHQELFSSKLDEDGNAEALV-QRPAIKVAGGI*SIESDRFEVQPVGDVAKEAQTYLKQCYLERGLPEV 351
            +N GAV+FLCGPQ +M AVR +L    W   AI +ELFSSKLDE+G A+  V QR A+++AGGI  +E     V+PVG V KEA+ +LKQCYLE+GLPEV
Sbjct:  245 YNDGAVSFLCGPQAFMDAVRDYLQVARWPTHAIREELFSSKLDEEGKAQTPVAQRAAVQLAGGITPVEQYSIYVEPVGSVMKEAEAFLKQCYLEQGLPEV 344
[Close]
BLAST of mRNA_P-canaliculata_contig99288.24042.1 vs. uniprot
Match: A0A1Z4S275_9NOSO (FHA domain containing protein n=2 Tax=Nostoc sp. NIES-4103 TaxID=2005458 RepID=A0A1Z4S275_9NOSO)

HSP 1 Score: 116 bits (290), Expect = 8.350e-28
Identity = 56/100 (56.00%), Postives = 74/100 (74.00%), Query Frame = 1 
Query:   55 FNSGAVAFLCGPQPYMSAVRSHLIAIGWAESAIHQELFSSKLDEDGNAEALV-QRPAIKVAGGI*SIESDRFEVQPVGDVAKEAQTYLKQCYLERGLPEV 351
            +  G+VAF+CGP+P+M  VR +L   GW + AI QELFSSKL+E+G A+  V QRPA+++AGGI  IE     VQP+  VA+EA+ +LKQCYLE+GL EV
Sbjct:  757 YTEGSVAFMCGPEPFMDGVRGYLQTAGWPDHAIRQELFSSKLNEEGKAQTPVPQRPAVQLAGGITPIEQISIYVQPINSVAQEAEVFLKQCYLEQGLAEV 856
[Close]
BLAST of mRNA_P-canaliculata_contig99288.24042.1 vs. uniprot
Match: UPI0004AD3C49 (nitric oxide synthase oxygenase n=2 Tax=Nostocales TaxID=1161 RepID=UPI0004AD3C49)

HSP 1 Score: 114 bits (286), Expect = 2.890e-27
Identity = 56/96 (58.33%), Postives = 73/96 (76.04%), Query Frame = 1 
Query:   64 GAVAFLCGPQPYMSAVRSHLIAIGWAESAIHQELFSSKLDEDGNAEALVQRPAIKVAGGI*SIESDRFEVQPVGDVAKEAQTYLKQCYLERGLPEV 351
            G VAF+CGPQP+M A+R +L   GW ++AI QELFSSKLDE+G A+A V R AI++AGGI  IE D   V+P+  V +EA+ +LKQCYLE+GL +V
Sbjct:  760 GTVAFMCGPQPFMDAMRDYLQQAGWQDTAIRQELFSSKLDEEGKAKAPV-RQAIQLAGGITPIEQDSIYVEPIASVMQEAEVFLKQCYLEQGLAQV 854
[Close]
BLAST of mRNA_P-canaliculata_contig99288.24042.1 vs. uniprot
Match: K9WNF9_9CYAN (Nitric oxide synthase, oxygenase domain protein n=2 Tax=Oscillatoriales TaxID=1150 RepID=K9WNF9_9CYAN)

HSP 1 Score: 114 bits (285), Expect = 3.940e-27
Identity = 54/100 (54.00%), Postives = 73/100 (73.00%), Query Frame = 1 
Query:   55 FNSGAVAFLCGPQPYMSAVRSHLIAIGWAESAIHQELFSSKLDEDGNAEA-LVQRPAIKVAGGI*SIESDRFEVQPVGDVAKEAQTYLKQCYLERGLPEV 351
            +  GAVAF+CGP+ YM A+R HL    W  SAI +ELFSSKLDE+G A+  +++R A+++AGGI  +E   F+V PVG V +EA+ +LKQCYLE+GL  V
Sbjct:  739 YTEGAVAFMCGPESYMKAIRGHLKEANWPNSAIREELFSSKLDEEGKAQKPVIKRTAVQLAGGITPVEHHSFDVGPVGSVVQEAEAFLKQCYLEQGLNAV 838
[Close]
BLAST of mRNA_P-canaliculata_contig99288.24042.1 vs. uniprot
Match: A0A844MCK4_9CYAN (Nitric oxide synthase NOS n=2 Tax=Scytonema sp. UIC 10036 TaxID=2304196 RepID=A0A844MCK4_9CYAN)

HSP 1 Score: 112 bits (280), Expect = 1.840e-26
Identity = 60/117 (51.28%), Postives = 79/117 (67.52%), Query Frame = 1 
Query:    1 AVRSRKRASSDLSARTAHFNSGAVAFLCGPQPYMSAVRSHLIAIGWAESAIHQELFSSKLDEDGNAEALVQRPAIKVAGGI*SIESDRFEVQPVGDVAKEAQTYLKQCYLERGLPEV 351
            A RS  R +++   R   + +  VAF+CGPQP+M A+R +L   GW +SAI QELFSSKLDE+G  +A V R  I++AGGI  IE     V+PV  V +EA+ +LKQCYLE+GL EV
Sbjct:  503 ATRSGNRLNAEAVQRLYPYTNNTVAFMCGPQPFMDAMRDYLQQAGWQDSAIRQELFSSKLDEEGKVKAPV-RQVIQLAGGITPIEQYSIYVEPVASVMQEAEVFLKQCYLEQGLAEV 618
[Close]
BLAST of mRNA_P-canaliculata_contig99288.24042.1 vs. uniprot
Match: A0A1Z4QI29_9NOST (FHA domain containing protein n=1 Tax=Cylindrospermum sp. NIES-4074 TaxID=2005457 RepID=A0A1Z4QI29_9NOST)

HSP 1 Score: 112 bits (279), Expect = 2.540e-26
Identity = 55/99 (55.56%), Postives = 72/99 (72.73%), Query Frame = 1 
Query:   55 FNSGAVAFLCGPQPYMSAVRSHLIAIGWAESAIHQELFSSKLDEDGNAEALVQRPAIKVAGGI*SIESDRFEVQPVGDVAKEAQTYLKQCYLERGLPEV 351
            ++ G VAF+CGPQP+M A+R +L    W +SAI QELFSSKLDE+G A+  V R  I++AGGI  IE D   V+P+  V +EA+ +LKQCYLE+GL EV
Sbjct:  748 YSDGTVAFMCGPQPFMDAMRDYLQQASWQDSAIRQELFSSKLDEEGKAKTPV-RQIIQLAGGITPIEQDSIYVEPIASVMQEAEVFLKQCYLEQGLGEV 845
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig99288.24042.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
UPI001D2541A44.150e-3771.72nitric oxide synthase oxygenase n=1 Tax=Waterburya... [more]
K9VZW9_9CYAN1.230e-3060.00Nitric oxide synthase NOS n=2 Tax=Oscillatoriales ... [more]
A0A328IAN2_9CYAN9.490e-2958.00Nitric oxide synthase NOS (Fragment) n=1 Tax=Hapal... [more]
A0A1Z4GX41_9CYAN6.120e-2858.95FHA domain containing protein n=2 Tax=Nostocales T... [more]
A0A352AP46_9CYAN7.710e-2858.00Nitric oxide synthase NOS n=1 Tax=Cyanobacteria ba... [more]
A0A1Z4S275_9NOSO8.350e-2856.00FHA domain containing protein n=2 Tax=Nostoc sp. N... [more]
UPI0004AD3C492.890e-2758.33nitric oxide synthase oxygenase n=2 Tax=Nostocales... [more]
K9WNF9_9CYAN3.940e-2754.00Nitric oxide synthase, oxygenase domain protein n=... [more]
A0A844MCK4_9CYAN1.840e-2651.28Nitric oxide synthase NOS n=2 Tax=Scytonema sp. UI... [more]
A0A1Z4QI29_9NOST2.540e-2655.56FHA domain containing protein n=1 Tax=Cylindrosper... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig99288contigP-canaliculata_contig99288:514..864 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score61.2
Seed ortholog evalue1.5e-07
Seed eggNOG ortholog1173022.Cri9333_1836
Preferred namenos
KEGG rclassRC00060,RC00061,RC00176,RC00177,RC00330,RC00557,RC01044,RC02812,RC03479
KEGG koko:K00302,ko:K00329,ko:K00356,ko:K00362,ko:K00366,ko:K00372,ko:K00491,ko:K02639,ko:K05927,ko:K11107,ko:K21479,ko:K21572
KEGG TC8.A.46.1,8.A.46.3
KEGG ReactionR00610,R00787,R00790,R00798,R01106,R11580,R11711,R11712,R11713,R11945
KEGG Pathwayko00190,ko00195,ko00220,ko00260,ko00330,ko00860,ko00910,ko01100,ko01110,ko01120,map00190,map00195,map00220,map00260,map00330,map00860,map00910,map01100,map01110,map01120
KEGG ModuleM00530,M00531
GOsGO:0001505,GO:0003674,GO:0003824,GO:0004497,GO:0004517,GO:0006807,GO:0006809,GO:0008150,GO:0008152,GO:0009058,GO:0009987,GO:0016491,GO:0016705,GO:0016709,GO:0017144,GO:0034641,GO:0042133,GO:0042136,GO:0044237,GO:0044249,GO:0044271,GO:0046209,GO:0055114,GO:0065007,GO:0065008,GO:0072593,GO:1903409,GO:2001057
EggNOG free text desc.Oxidoreductase FAD-binding domain
EggNOG OGs1G49Z@1117,1H9E7@1150,COG0702@1,COG0702@2,COG1018@1,COG1018@2,COG1251@1,COG1251@2,COG4362@1,COG4362@2,COG5126@1,COG5126@2
EC1.12.5.1,1.14.14.47,1.5.3.1,1.6.5.3,1.6.99.3,1.7.1.15,1.7.7.1,2.1.1.272
COG Functional cat.C
Best tax levelOscillatoriales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko00194,ko01000,ko02000
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size351
Cds size147
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig99288.24042.1prot_P-canaliculata_contig99288.24042.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig99288 619..765 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817353.3791192-UTR-P-canaliculata_contig99288:513..6181622817353.3791192-UTR-P-canaliculata_contig99288:513..618Pelvetia canaliculata dioeciousUTRP-canaliculata_contig99288 514..618 -
1693495242.2212446-UTR-P-canaliculata_contig99288:513..6181693495242.2212446-UTR-P-canaliculata_contig99288:513..618Pelvetia canaliculata dioeciousUTRP-canaliculata_contig99288 514..618 -
1622817353.414659-UTR-P-canaliculata_contig99288:765..8641622817353.414659-UTR-P-canaliculata_contig99288:765..864Pelvetia canaliculata dioeciousUTRP-canaliculata_contig99288 766..864 -
1693495242.2428448-UTR-P-canaliculata_contig99288:765..8641693495242.2428448-UTR-P-canaliculata_contig99288:765..864Pelvetia canaliculata dioeciousUTRP-canaliculata_contig99288 766..864 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817353.3970792-CDS-P-canaliculata_contig99288:618..7651622817353.3970792-CDS-P-canaliculata_contig99288:618..765Pelvetia canaliculata dioeciousCDSP-canaliculata_contig99288 619..765 -
1693495242.2333786-CDS-P-canaliculata_contig99288:618..7651693495242.2333786-CDS-P-canaliculata_contig99288:618..765Pelvetia canaliculata dioeciousCDSP-canaliculata_contig99288 619..765 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig99288.24042.1

>prot_P-canaliculata_contig99288.24042.1 ID=prot_P-canaliculata_contig99288.24042.1|Name=mRNA_P-canaliculata_contig99288.24042.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=49bp
MSAVRSHLIAIGWAESAIHQELFSSKLDEDGNAEALVQRPAIKVAGGI*
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mRNA from alignment at P-canaliculata_contig99288:514..864-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig99288.24042.1 ID=mRNA_P-canaliculata_contig99288.24042.1|Name=mRNA_P-canaliculata_contig99288.24042.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=351bp|location=Sequence derived from alignment at P-canaliculata_contig99288:514..864- (Pelvetia canaliculata dioecious)
GCAGTTAGGTCCCGTAAACGAGCCAGTAGTGACCTATCAGCCAGGACAGC
ACATTTTAATTCAGGGGCGGTAGCATTTCTTTGTGGTCCTCAACCCTATA
TGTCCGCAGTGCGATCGCATCTAATCGCAATAGGCTGGGCAGAATCGGCG
ATTCACCAGGAACTGTTCTCGTCCAAGCTTGATGAAGACGGCAATGCGGA
GGCATTAGTCCAGCGTCCTGCGATAAAAGTAGCGGGAGGCATCTAAAGTA
TCGAAAGCGATCGCTTTGAAGTGCAGCCCGTGGGCGACGTGGCAAAAGAG
GCGCAGACATATCTCAAACAGTGTTACCTCGAACGAGGCTTGCCCGAAGT
C
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Coding sequence (CDS) from alignment at P-canaliculata_contig99288:514..864-

>mRNA_P-canaliculata_contig99288.24042.1 ID=mRNA_P-canaliculata_contig99288.24042.1|Name=mRNA_P-canaliculata_contig99288.24042.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=294bp|location=Sequence derived from alignment at P-canaliculata_contig99288:514..864- (Pelvetia canaliculata dioecious)
ATGTCCGCAGTGCGATCGCATCTAATCGCAATAGGCTGGGCAGAATCGGC
GATTCACCAGGAACTGTTCTCGTCCAAGCTTGATGAAGACGGCAATGCGG
AGGCATTAGTCCAGCGTCCTGCGATAAAAGTAGCGGGAGGCATCTAAATG
TCCGCAGTGCGATCGCATCTAATCGCAATAGGCTGGGCAGAATCGGCGAT
TCACCAGGAACTGTTCTCGTCCAAGCTTGATGAAGACGGCAATGCGGAGG
CATTAGTCCAGCGTCCTGCGATAAAAGTAGCGGGAGGCATCTAA
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