mRNA_P-canaliculata_contig99222.24040.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig99222.24040.1
Unique NamemRNA_P-canaliculata_contig99222.24040.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig99222.24040.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig99222contigP-canaliculata_contig99222:123..1028 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size906
Cds size906
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817353.280789-CDS-P-canaliculata_contig99222:122..10281622817353.280789-CDS-P-canaliculata_contig99222:122..1028Pelvetia canaliculata dioeciousCDSP-canaliculata_contig99222 123..1028 -
1693495242.1667783-CDS-P-canaliculata_contig99222:122..10281693495242.1667783-CDS-P-canaliculata_contig99222:122..1028Pelvetia canaliculata dioeciousCDSP-canaliculata_contig99222 123..1028 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig99222.24040.1prot_P-canaliculata_contig99222.24040.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig99222 123..1028 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig99222.24040.1

>prot_P-canaliculata_contig99222.24040.1 ID=prot_P-canaliculata_contig99222.24040.1|Name=mRNA_P-canaliculata_contig99222.24040.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=302bp
LLLFDTCEAESIRSELKSIPNPDLTAIFAASKAENAWNLSTDQGTQFAFA
TSSVLARERFLETSWDAVDLCIQVKAEIEKDISTPHQTVTRFVRGAPVEI
ESSEIVSQKTRKSRSFARLILRVAITGFILATVCFSLLTYWRSHVFLFVD
LGEFTTLTNDPELVVYGMHPESNSLIQIKRQRIDGHTSSWMFLPASNLVI
DLDGKFNDAHPRELRFHRTFQPGFDTIKTFRLSLPPTAEILENVGMAFIS
AETWQHGEGKVRGDEVPAFWIDIKQLTIRQYLPLLLRALEKKRIQPHESV
LL
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mRNA from alignment at P-canaliculata_contig99222:123..1028-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig99222.24040.1 ID=mRNA_P-canaliculata_contig99222.24040.1|Name=mRNA_P-canaliculata_contig99222.24040.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=906bp|location=Sequence derived from alignment at P-canaliculata_contig99222:123..1028- (Pelvetia canaliculata dioecious)
CTGCTCCTTTTCGATACTTGCGAGGCGGAGTCAATTCGCAGCGAACTAAA
GTCGATCCCAAATCCAGACCTAACAGCAATTTTCGCAGCTTCGAAAGCTG
AGAATGCTTGGAATTTATCAACTGACCAAGGCACTCAATTTGCGTTTGCT
ACGTCCAGCGTATTGGCGAGAGAACGATTTCTTGAAACATCCTGGGATGC
CGTTGACCTGTGTATTCAGGTGAAGGCTGAGATAGAGAAAGATATCTCAA
CACCACACCAAACTGTCACTCGCTTTGTGCGAGGAGCGCCAGTTGAAATT
GAATCATCCGAAATAGTTTCGCAAAAAACAAGAAAGTCACGCTCTTTTGC
CCGCTTGATACTGCGAGTCGCAATTACCGGATTCATATTGGCGACTGTTT
GCTTTTCCCTGTTGACCTACTGGCGTAGTCACGTGTTCCTCTTTGTTGAC
TTAGGCGAATTCACAACGCTCACAAATGATCCCGAGTTAGTAGTCTACGG
GATGCATCCTGAATCAAATTCATTGATTCAAATCAAACGGCAACGCATAG
ATGGTCATACCTCTTCTTGGATGTTTTTACCCGCAAGCAACTTGGTGATT
GACCTAGATGGAAAATTCAATGATGCGCATCCAAGAGAGCTTCGGTTTCA
CCGAACTTTCCAGCCGGGATTCGATACAATAAAGACCTTTAGGCTATCTT
TACCTCCCACCGCAGAGATACTTGAAAATGTCGGAATGGCATTTATCTCT
GCGGAAACCTGGCAGCACGGTGAGGGCAAGGTGCGCGGTGATGAGGTCCC
TGCATTCTGGATAGATATCAAGCAGCTTACGATTCGTCAGTATCTGCCCT
TGCTTTTACGTGCTCTTGAAAAAAAACGAATTCAACCTCACGAGTCCGTC
CTTCTT
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Coding sequence (CDS) from alignment at P-canaliculata_contig99222:123..1028-

>mRNA_P-canaliculata_contig99222.24040.1 ID=mRNA_P-canaliculata_contig99222.24040.1|Name=mRNA_P-canaliculata_contig99222.24040.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1812bp|location=Sequence derived from alignment at P-canaliculata_contig99222:123..1028- (Pelvetia canaliculata dioecious)
CTGCTCCTTTTCGATACTTGCGAGGCGGAGTCAATTCGCAGCGAACTAAA
GTCGATCCCAAATCCAGACCTAACAGCAATTTTCGCAGCTTCGAAAGCTG
AGAATGCTTGGAATTTATCAACTGACCAAGGCACTCAATTTGCGTTTGCT
ACGTCCAGCGTATTGGCGAGAGAACGATTTCTTGAAACATCCTGGGATGC
CGTTGACCTGTGTATTCAGGTGAAGGCTGAGATAGAGAAAGATATCTCAA
CACCACACCAAACTGTCACTCGCTTTGTGCGAGGAGCGCCAGTTGAAATT
GAATCATCCGAAATAGTTTCGCAAAAAACAAGAAAGTCACGCTCTTTTGC
CCGCTTGATACTGCGAGTCGCAATTACCGGATTCATATTGGCGACTGTTT
GCTTTTCCCTGTTGACCTACTGGCGTAGTCACGTGTTCCTCTTTGTTGAC
TTAGGCGAATTCACAACGCTCACAAATGATCCCGAGTTAGTAGTCTACGG
GATGCATCCTGAATCAAATTCATTGATTCAAATCAAACGGCAACGCATAG
ATGGTCATACCTCTTCTTGGATGTTTTTACCCGCAAGCAACTTGGTGATT
GACCTAGATGGAAAATTCAATGATGCGCATCCAAGAGAGCTTCGGTTTCA
CCGAACTTTCCAGCCGGGATTCGATACAATAAAGACCTTTAGGCTATCTT
TACCTCCCACCGCAGAGATACTTGAAAATGTCGGAATGGCATTTATCTCT
GCGGAAACCTGGCAGCACGGTGAGGGCAAGGTGCGCGGTGATGAGGTCCC
TGCATTCTGGATAGATATCAAGCAGCTTACGATTCGTCAGTATCTGCCCT
TGCTTTTACGTGCTCTTGAAAAAAAACGAATTCAACCTCACGAGTCCGTC
CTTCTTCTGCTCCTTTTCGATACTTGCGAGGCGGAGTCAATTCGCAGCGA
ACTAAAGTCGATCCCAAATCCAGACCTAACAGCAATTTTCGCAGCTTCGA
AAGCTGAGAATGCTTGGAATTTATCAACTGACCAAGGCACTCAATTTGCG
TTTGCTACGTCCAGCGTATTGGCGAGAGAACGATTTCTTGAAACATCCTG
GGATGCCGTTGACCTGTGTATTCAGGTGAAGGCTGAGATAGAGAAAGATA
TCTCAACACCACACCAAACTGTCACTCGCTTTGTGCGAGGAGCGCCAGTT
GAAATTGAATCATCCGAAATAGTTTCGCAAAAAACAAGAAAGTCACGCTC
TTTTGCCCGCTTGATACTGCGAGTCGCAATTACCGGATTCATATTGGCGA
CTGTTTGCTTTTCCCTGTTGACCTACTGGCGTAGTCACGTGTTCCTCTTT
GTTGACTTAGGCGAATTCACAACGCTCACAAATGATCCCGAGTTAGTAGT
CTACGGGATGCATCCTGAATCAAATTCATTGATTCAAATCAAACGGCAAC
GCATAGATGGTCATACCTCTTCTTGGATGTTTTTACCCGCAAGCAACTTG
GTGATTGACCTAGATGGAAAATTCAATGATGCGCATCCAAGAGAGCTTCG
GTTTCACCGAACTTTCCAGCCGGGATTCGATACAATAAAGACCTTTAGGC
TATCTTTACCTCCCACCGCAGAGATACTTGAAAATGTCGGAATGGCATTT
ATCTCTGCGGAAACCTGGCAGCACGGTGAGGGCAAGGTGCGCGGTGATGA
GGTCCCTGCATTCTGGATAGATATCAAGCAGCTTACGATTCGTCAGTATC
TGCCCTTGCTTTTACGTGCTCTTGAAAAAAAACGAATTCAACCTCACGAG
TCCGTCCTTCTT
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