mRNA_P-canaliculata_contig9921.24039.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig9921.24039.1
Unique NamemRNA_P-canaliculata_contig9921.24039.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig9921.24039.1 vs. uniprot
Match: F6MHT6_SACJA (Carbonic anhydrase n=1 Tax=Saccharina japonica TaxID=88149 RepID=F6MHT6_SACJA)

HSP 1 Score: 360 bits (925), Expect = 2.430e-119
Identity = 171/258 (66.28%), Postives = 206/258 (79.84%), Query Frame = 1
Query:  529 GDDDPASDAAEWTYRRTATDGGEPYGPSDWFQGYPDCGGIAQSPINLAASTHTIVESTQFDLQFSPHTCASEDLFFIANERVWEVVFEGCAQQASLSFNGETYNLVQIHIHSPSEHAIGGSLRAAEIHWVHVKAVTEDKLLVVGVLFDVSEYGTNVELQPLWDVLDSGADSTSASFETRIYDLIPPNKVFSHYMGSLTTPPCTEGVTWIVMNEPTVISKMQLDEFRVSVAQFDDSKVDEQGNTNRPYQPLNDRDVFLV 1302
            G  +PA  AAEWTYRRT+T+G +PYGPSDW +GYPDCG  AQSPI+LAA   T+V+ + ++L+F P+ C S++L F A+ERVWE++F GC+    + F GE YNL+QIHIHSPSEH IGGS  +AEIHWVHVK  TED+LLVVGVLFD ++YG+NVE++ LWDVLD G  +T   F TRIYD++P N VFSHYMGSLTTPPCTEGV WIVM++P  +SKMQLDEFR SVA FDDSKVDE GNTNRP Q LNDR +F V
Sbjct:   33 GGGEPA--AAEWTYRRTSTNGQQPYGPSDWHKGYPDCGKKAQSPIDLAADLETVVKGSAYELKFYPNECKSDELLFQADERVWEILFGGCSDVPHVEFKGERYNLLQIHIHSPSEHMIGGSEHSAEIHWVHVKEGTEDQLLVVGVLFDTTDYGSNVEIEHLWDVLDIGETTTKEVFTTRIYDIMPSNPVFSHYMGSLTTPPCTEGVKWIVMSDPVTMSKMQLDEFRTSVALFDDSKVDEHGNTNRPGQSLNDRKIFFV 288          
BLAST of mRNA_P-canaliculata_contig9921.24039.1 vs. uniprot
Match: D8LB10_ECTSI (Carbonic anhydrase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB10_ECTSI)

HSP 1 Score: 274 bits (700), Expect = 2.170e-85
Identity = 136/256 (53.12%), Postives = 166/256 (64.84%), Query Frame = 1
Query:  535 DDPASDAAEWTYRRTATDGGEPYGPSDWFQGYPDCGGIAQSPINLAASTHTIVESTQFDLQFSPHTCASEDLFFIANERVWEVVFEGCAQQASLSFNGETYNLVQIHIHSPSEHAIGGSLRAAEIHWVHVKAVTEDKLLVVGVLFDVSEYGTNVELQPLWDVLDSGADSTSASFETRIYDLIPPNKVFSHYMGSLTTPPCTEGVTWIVMNEPTVISKMQLDEFRVSVAQFDDSKVDEQGNTNRPYQPLNDRDVFLV 1302
            DD A  AAEWTYR T   G EPYGP DW+ GYPDC G  Q+PIN+AA         +  + F P  C S +L F ++  VW+V F GC     L + GETYNL+Q HIHSPSEH +GG+  AAEIH VH+K  T D LLVVG++F+VS+YG NVEL+P+W+V+D   D     F    Y L+P    F+ Y GSLTTPPCTEGV WI+M+EP  +S  QLD +R +VA  + SKV E G TNRP Q LN RDV  V
Sbjct:   40 DDEA--AAEWTYRATGVVGEEPYGPDDWYLGYPDCAGTKQTPINIAADVMGTATMQEQAIAFFPSECNSTELVFKSDFAVWQVDFSGCTDAPYLQYQGETYNLLQFHIHSPSEHVLGGAEHAAEIHLVHLKQNTTDGLLVVGIMFEVSDYGQNVELEPMWNVMDLNQDIAEEQFMAAAYSLLPATPSFTTYSGSLTTPPCTEGVRWILMSEPNYMSTWQLDNYRRAVALHEGSKVSEVGATNRPIQELNGRDVLYV 293          
BLAST of mRNA_P-canaliculata_contig9921.24039.1 vs. uniprot
Match: A0A872YNN4_SACJA (Carbonic anhydrase n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A872YNN4_SACJA)

HSP 1 Score: 273 bits (699), Expect = 3.060e-85
Identity = 139/260 (53.46%), Postives = 179/260 (68.85%), Query Frame = 1
Query:  532 DDDPASDAAEWTYRRTATDGGEPYGPSDWFQGYPDCGGIAQSPINLAASTHTIVESTQFDLQFSPHTCASEDLFFIANERVWEVVFEGCAQQASLSFNGETYNLVQIHIHSPSEHAIGGSLRAAEIHWVHVKAV---TEDKLLVVGVLFDVSEYGTNVELQPLWDVLDSGADSTSASFETRIYDLIPPNKVFSHYMGSLTTPPCTEGVTWIVMNEPTVISKMQLDEFRVSVAQFDDSKVDEQGNTNRPYQPLNDRDVFLV 1302
            D+   S   +WTYRR + +G  PY PSDW  GYPDCGG +QSPINL+A+  T+VE+T+F+L+     CAS++L F AN  VWE+ F  C   ++LSF+G  Y+L+Q+HIHSPSEH + GSL  AEIH VH +     TE +LLV+GV  D  E+G NV L+PLWDVL SGA           Y+LIP +  +SHYMGSLTTPPC+E V W+VM+ PTVI  +QLD FR SVA   +S+VDE+ NTNRP Q +N R V++V
Sbjct:   39 DEPEESSFPDWTYRRASHEGERPYSPSDWEIGYPDCGGDSQSPINLSANVGTLVEATEFNLELFGAECASKELDFEANGHVWEIDFSECTSTSNLSFDGGKYSLLQMHIHSPSEHMVAGSLHDAEIHLVHSRDDSDGTESELLVIGVFLDAKEHGWNVALEPLWDVLGSGAKPRGV---INPYELIPSDMAYSHYMGSLTTPPCSEIVRWVVMSTPTVIGDLQLDIFRDSVATATNSQVDERSNTNRPGQAINGRAVYIV 295          
BLAST of mRNA_P-canaliculata_contig9921.24039.1 vs. uniprot
Match: Q9SMD6_9PHAE (Carbonic anhydrase alpha type (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q9SMD6_9PHAE)

HSP 1 Score: 209 bits (532), Expect = 1.900e-62
Identity = 98/141 (69.50%), Postives = 116/141 (82.27%), Query Frame = 1
Query:  880 IGGSLRAAEIHWVHVKAVTEDKLLVVGVLFDVSEYGTNVELQPLWDVLDSGADSTSASFETRIYDLIPPNKVFSHYMGSLTTPPCTEGVTWIVMNEPTVISKMQLDEFRVSVAQFDDSKVDEQGNTNRPYQPLNDRDVFLV 1302
            IGGS   AEIHWVHVKA T+D+LLV+GVLFD ++YG+NVE++ LWDVLD G  +T   F TR+YD++P N VFSHYMGSLTTPPCTEGV WIVM++P  + KMQLDEFR SVA FD+SKVDE GNTNRP Q LN+RD+F V
Sbjct:    2 IGGSEHEAEIHWVHVKAGTDDQLLVIGVLFDTTQYGSNVEIEHLWDVLDIGKPTTDEVFVTRVYDIMPSNPVFSHYMGSLTTPPCTEGVKWIVMSDPVTMGKMQLDEFRTSVALFDNSKVDEMGNTNRPRQSLNNRDIFFV 142          
BLAST of mRNA_P-canaliculata_contig9921.24039.1 vs. uniprot
Match: H6WB77_VAULI (Carbonic anhydrase n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WB77_VAULI)

HSP 1 Score: 152 bits (383), Expect = 5.080e-39
Identity = 92/255 (36.08%), Postives = 128/255 (50.20%), Query Frame = 1
Query:  616 WFQGYPDCGGIAQSPINLA---ASTHTIVESTQFDLQFSPHTCASEDLFFIANERVWEVVFEG-CAQQASLSFNGETYNLVQIHIHSPSEHAIGGSLRAAEIHWVHVKAVTEDKLLVVGVLFD-VSEYGTNVELQPLWD-----------------------VLDSGADSTSASFETRIYDLIPPNKVFSHYMGSLTTPPCTEGVTWIVMNEPTVISKMQLDEFRVSVAQFDDSKVDEQGNTNRPYQPLNDRDVF 1296
            W   YPDC G+ QSPIN+A    +T   +        F    C  +DL + A+ + W V F+G C    +++ NG  +NL+Q H+HS SEH IGG    AEIH+VH  A+    L VVGV+    S+   N+E    W+                       V  + + S SA  +   Y ++P +  + +Y+GSLTTPPC+E VTWIVM E   +S  QL+ FR  +   +   VD  GN  RP QP N R V+
Sbjct:    2 WGALYPDCLGVRQSPINIARDIVTTDCTLAPVTGAFVFDMGACMLDDLDYKADGKGWTVTFDGYCQTTPTITINGAVFNLLQFHLHSVSEHVIGGGYYDAEIHFVHYSALDPTSLAVVGVMISSTSDNVGNLEFAKYWEHMAYVSGKQQYASEIVEKSTATMVSATASSSMSAMEQVNPYSMLPADGTYYNYLGSLTTPPCSETVTWIVMKEGITVSPDQLEAFRAGLMDPEFPLVDNYGNNARPPQPTNGRMVY 256          
BLAST of mRNA_P-canaliculata_contig9921.24039.1 vs. uniprot
Match: H6WB76_VAULI (Carbonic anhydrase n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WB76_VAULI)

HSP 1 Score: 145 bits (366), Expect = 9.960e-36
Identity = 94/263 (35.74%), Postives = 130/263 (49.43%), Query Frame = 1
Query:  607 PSDWFQGYPDCGGIAQSPINLA---ASTHTIVESTQFDLQFSPHTCASEDLFFIANERVWEVVFEG-CAQQASLSFNGETYNLVQIHIHSPSEHAIGGSLRAAEIHWVHVKAVTEDKLLVVGVLFD-VSEYGTNVELQPLWDVL--------------------------DSGADSTSASFETRI--YDLIPPNKVFSHYMGSLTTPPCTEGVTWIVMNEPTVISKMQLDEFRVSVAQFDDSKVDEQGNTNRPYQPLNDRDVF 1296
            P  W   YPDC G+ QSPIN+A    +T   +        F    C  +DL + A+ + W V F+G C    +++ NG  +NL+Q H+HS SEH IGG    AEIH+VH  A+    L VVGV+    S+   N+E     + +                           S A STS S   ++  Y ++P +  + +Y+GSLTTPPC+E VTWIVM E   +S  QL+ FR  +   +   VD  GN  RP QP N R V+
Sbjct:   75 PDMWGYLYPDCLGVRQSPINIARDIVTTDCTLAPVTGAFVFDMGMCMLDDLDYKADGKGWTVTFDGYCQTTPTITINGAVFNLLQFHLHSVSEHVIGGGYYDAEIHFVHYSALDPTSLAVVGVMISSTSDNIGNLEFTKYAEHMAYVSGKQKYASEIMETDATMAPAATPSSMASSTSMSAMEQVNPYSMLPADGTYYNYLGSLTTPPCSETVTWIVMKEGITVSPDQLEAFRAGLMDPEFPLVDNYGNNARPPQPTNGRMVY 337          
BLAST of mRNA_P-canaliculata_contig9921.24039.1 vs. uniprot
Match: A0A450XNX8_9GAMM (Carbonic anhydrase n=1 Tax=Candidatus Kentron sp. MB TaxID=2138164 RepID=A0A450XNX8_9GAMM)

HSP 1 Score: 128 bits (322), Expect = 1.940e-30
Identity = 83/237 (35.02%), Postives = 124/237 (52.32%), Query Frame = 1
Query:  601 YGPSDWFQGYPDCG-GIAQSPINLAASTHTIVESTQFDLQFSPHTCASEDLFFIANERVWEVVFEGCAQQASLSFNGETYNLVQIHIHSPSEHAIGGSLRAAEIHWVHVKAVTEDKLLVVGVLFDVSEYGTNVELQPLWDVLDSGADSTSASFET-RIYDLIPPNKVFSHYMGSLTTPPCTEGVTWIVMNEPTVISKMQLDEFRVSVAQFDDSKVDEQGNTNRPYQPLNDRDVFLVK 1305
            +GP  W +    CG G  QSPI++   T T   S   D+Q+ P       +  + N    +  F G  ++  L  +G+ Y L+Q+H H+PSEH IGG L + E+H VH  A  + +L V+G++  + E   N  ++ +W+ +       + S ET  +  L+P +K F +YMGSLTTPPC+EGV W VM  P   S+ Q+ +F   +           G +NRP QPLN R +F  K
Sbjct:   38 HGPEHWGKVSAVCGSGKTQSPIDIKGQTKTGAPS--LDMQYHP----VPSINVLNNGHTIKGSFGG--EKNRLLVDGKPYKLLQLHFHTPSEHQIGGKLASMELHLVHQNA--DKELAVIGIM--IEEGKENKAIKGIWEKMPKKVAKETESHETFNVASLLPKDKTFFYYMGSLTTPPCSEGVRWFVMKTPIHFSEEQIRKFHRII-----------GVSNRPLQPLNGRTIFQGK 251          
BLAST of mRNA_P-canaliculata_contig9921.24039.1 vs. uniprot
Match: A0A836C9F5_9STRA (Alpha carbonic anhydrase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9F5_9STRA)

HSP 1 Score: 131 bits (329), Expect = 2.030e-30
Identity = 91/289 (31.49%), Postives = 138/289 (47.75%), Query Frame = 1
Query:  502 GTSTPQIL--FGDDDPASDAAEWTYRRTATDGGE--PYGPSDWFQG--YPDCGGIAQSPINLAASTHTIVESTQ-------FDLQFSPHTCASEDLFFIANERVWEVVFEGC--AQQASLSFNG----ETYNLVQIHIHSPSEHAIGGSLRAAEIHWVHVKAVTEDKLLVVGVLFDVSEYGTNVELQPLWDVLDS------GADSTSASFETRIYDLIPPNKVFSHYMGSLTTPPCTEGVTWIVMNEPTVISKMQLDEFRVSVAQFDDSKVDEQGNTNRPYQPLNDRDV 1293
            GTS P  +     DDP   A +WTY       G      P+DW +   Y  C G  QSPI++  ST   +  +        F  Q    +C    L   + +   E+ +E C  + +  L ++G     +Y L Q+H+H+ SEH++ G   AAE+H VH+       +LV+ VL DV+E     E+   W +++       G  +   +  +  Y L+P +K +  Y GSLT PPCTE VT++++ E T ++  QL  FR S        +D+ G+  RP QPLN R V
Sbjct:   64 GTSDPAAICTLNPDDPT--ALDWTYNPVCYGDGSYTVLAPADWHKNEDYAACAGPRQSPIDIVTSTLNDLGCSSDNEYLPAFSWQLQSGSCPFSQLV-PSTKHALELSYEECDDSTRPGLQYSGALGHSSYKLKQVHLHAGSEHSVDGQFGAAELHLVHINEADSTDILVLAVLLDVAETSEEPEVYKYWTLMNEAVANYQGESAIDMNAISDPYALLPESKQYYTYQGSLTIPPCTETVTFVILAERTQVADAQLQAFRQSQTIAFGPTLDQSGSNARPLQPLNGRSV 349          
BLAST of mRNA_P-canaliculata_contig9921.24039.1 vs. uniprot
Match: A0A7S3XPW5_HETAK (Carbonic anhydrase (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XPW5_HETAK)

HSP 1 Score: 125 bits (315), Expect = 2.630e-29
Identity = 87/278 (31.29%), Postives = 135/278 (48.56%), Query Frame = 1
Query:  355 PPSSPSRVMYLRSRVFPNLSLGARRTAMVVAVATLLTFCCWILILSPWSGTSTPQILFGDDDPASDAAEWTYRRTATDGGEPYG--PSDWFQGYPDCGGIAQSPINLAASTHTIVESTQFDLQFSPHTCASEDLFFIANERVWEVVFEGCAQQASLSFNGETYNLVQIHIHSPSEHAIGGSLRAAEIHWVHVKAVTEDKLLVVGVLFDVSEYGTNVELQPLW-----DVLDSGADSTSASFETRIYDLIPPNKVFSHYMGSLTTPPCTEGVTWIVMNE 1167
            PP  P  ++ +++    +L  G R+   V A A L    C +        TS    ++   D  +   +        DG   Y   P +W +   DC G  QSPIN+  +  +    +   LQ + +    + L+ + N   W+V    C    + ++NG  Y LVQ H HSPSE+ IGG    AE+H VH  A  +  LLV+GV+FDV +YG N   +  W     DV    ++ + +S      +++P +  + H+ GSLTTPPC+EGVTWI+M++
Sbjct:    5 PP--PRLIILIQASPTASLIKGGRKMNKVFAFALLAAHACMVQA----GFTSYKYWVYNQADSIAAGTD------CGDGDTQYACSPENWGEVNRDCEGENQSPINVVMAQKS---KSLSQLQLNKNNEDCDLLYLVDNYHTWKVDMSECDGSYTTTWNGVDYELVQFHFHSPSENTIGGGYFDAEMHLVHADA--DSNLLVIGVMFDVVDYGGNNFFKEFWNNTWSDVSTGDSEVSLSSTLDPYTEILPADLSYYHWNGSLTTPPCSEGVTWILMSQ 265          
BLAST of mRNA_P-canaliculata_contig9921.24039.1 vs. uniprot
Match: A0A835YV18_9STRA (Alpha carbonic anhydrase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV18_9STRA)

HSP 1 Score: 131 bits (330), Expect = 4.380e-29
Identity = 92/287 (32.06%), Postives = 138/287 (48.08%), Query Frame = 1
Query:  505 TSTPQIL--FGDDDPASDAAEWTYRRTATDGGE--PYGPSDWFQG--YPDCGGIAQSPINLAASTHTIVESTQ------FDLQFSPHTCASEDLFFIANERVWEVVFEGC--AQQASLSFNG----ETYNLVQIHIHSPSEHAIGGSLRAAEIHWVHVKAVTEDKLLVVGVLFDVSEYGTNVELQPLWDVLDS------GADSTSASFETRIYDLIPPNKVFSHYMGSLTTPPCTEGVTWIVMNEPTVISKMQLDEFRVSVAQFDDSKVDEQGNTNRPYQPLNDRDV 1293
            TS P  +     DDP   A +WTY       G      P+DW +   Y  C G  QSPI++  ST     S+       F  Q    +C    L   + +   E+ +EGC  + +  L ++G     +Y L Q+H+H+ SEH++ G   AAE+H VH+       +LV+ VL DV+E     E+   W +++       G  +   +  +  Y L+P +K +  Y GSLT PPCTE VT++++ E T ++  QL  FR S        +D+ G+  RP QPLN R V
Sbjct:  369 TSDPAAICTLNPDDPT--ALDWTYNPVCYGDGSYTVLAPADWHKNEEYAACAGPRQSPIDIVTSTLEDRCSSDNEYLPAFSWQLQSGSCPFSQLV-PSTKHALELSYEGCDDSTRPGLQYSGALGHSSYKLKQVHLHAGSEHSVDGEFGAAELHLVHINEADSTDILVLAVLLDVAETSEEPEVYKYWTLMNEAVANYQGESAIDMNAISDPYALLPESKQYYTYQGSLTIPPCTETVTFVILAERTQVADAQLQAFRQSQTIAFGPTLDQSGSNARPLQPLNGRSV 652          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9921.24039.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
F6MHT6_SACJA2.430e-11966.28Carbonic anhydrase n=1 Tax=Saccharina japonica Tax... [more]
D8LB10_ECTSI2.170e-8553.13Carbonic anhydrase n=2 Tax=Ectocarpus TaxID=2879 R... [more]
A0A872YNN4_SACJA3.060e-8553.46Carbonic anhydrase n=1 Tax=Saccharina japonica Tax... [more]
Q9SMD6_9PHAE1.900e-6269.50Carbonic anhydrase alpha type (Fragment) n=1 Tax=L... [more]
H6WB77_VAULI5.080e-3936.08Carbonic anhydrase n=1 Tax=Vaucheria litorea TaxID... [more]
H6WB76_VAULI9.960e-3635.74Carbonic anhydrase n=1 Tax=Vaucheria litorea TaxID... [more]
A0A450XNX8_9GAMM1.940e-3035.02Carbonic anhydrase n=1 Tax=Candidatus Kentron sp. ... [more]
A0A836C9F5_9STRA2.030e-3031.49Alpha carbonic anhydrase n=1 Tax=Tribonema minus T... [more]
A0A7S3XPW5_HETAK2.630e-2931.29Carbonic anhydrase (Fragment) n=1 Tax=Heterosigma ... [more]
A0A835YV18_9STRA4.380e-2932.06Alpha carbonic anhydrase n=1 Tax=Tribonema minus T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig9921contigP-canaliculata_contig9921:67..3686 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score277.7
Seed ortholog evalue6.6e-72
Seed eggNOG ortholog2880.D8LB10
KEGG rclassRC02807
KEGG koko:K01672,ko:K01674,ko:K04413
KEGG ReactionR00132,R10092
KEGG Pathwayko00910,map00910
GOsGO:0005575,GO:0005623,GO:0042597,GO:0044464
EggNOG free text desc.carbonate dehydratase activity
EggNOG OGsCOG3338@1,KOG0382@2759
EC2.7.11.1,4.2.1.1
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001
Hectar predicted targeting categorysignal anchor
Exons10
Model size1482
Cds size933
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig9921.24039.1prot_P-canaliculata_contig9921.24039.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig9921 445..3504 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817353.1167104-UTR-P-canaliculata_contig9921:66..4441622817353.1167104-UTR-P-canaliculata_contig9921:66..444Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9921 67..444 +
1693495242.0220745-UTR-P-canaliculata_contig9921:66..4441693495242.0220745-UTR-P-canaliculata_contig9921:66..444Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9921 67..444 +
1622817353.2362223-UTR-P-canaliculata_contig9921:3504..35411622817353.2362223-UTR-P-canaliculata_contig9921:3504..3541Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9921 3505..3541 +
1693495242.1474938-UTR-P-canaliculata_contig9921:3504..35411693495242.1474938-UTR-P-canaliculata_contig9921:3504..3541Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9921 3505..3541 +
1622817353.2496128-UTR-P-canaliculata_contig9921:3552..36861622817353.2496128-UTR-P-canaliculata_contig9921:3552..3686Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9921 3553..3686 +
1693495242.1564534-UTR-P-canaliculata_contig9921:3552..36861693495242.1564534-UTR-P-canaliculata_contig9921:3552..3686Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9921 3553..3686 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817353.1292596-CDS-P-canaliculata_contig9921:444..6071622817353.1292596-CDS-P-canaliculata_contig9921:444..607Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9921 445..607 +
1693495242.041153-CDS-P-canaliculata_contig9921:444..6071693495242.041153-CDS-P-canaliculata_contig9921:444..607Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9921 445..607 +
1622817353.1424592-CDS-P-canaliculata_contig9921:787..8571622817353.1424592-CDS-P-canaliculata_contig9921:787..857Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9921 788..857 +
1693495242.0557458-CDS-P-canaliculata_contig9921:787..8571693495242.0557458-CDS-P-canaliculata_contig9921:787..857Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9921 788..857 +
1622817353.155259-CDS-P-canaliculata_contig9921:1154..12391622817353.155259-CDS-P-canaliculata_contig9921:1154..1239Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9921 1155..1239 +
1693495242.0664973-CDS-P-canaliculata_contig9921:1154..12391693495242.0664973-CDS-P-canaliculata_contig9921:1154..1239Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9921 1155..1239 +
1622817353.1660652-CDS-P-canaliculata_contig9921:1419..15031622817353.1660652-CDS-P-canaliculata_contig9921:1419..1503Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9921 1420..1503 +
1693495242.0765998-CDS-P-canaliculata_contig9921:1419..15031693495242.0765998-CDS-P-canaliculata_contig9921:1419..1503Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9921 1420..1503 +
1622817353.1806886-CDS-P-canaliculata_contig9921:1959..20581622817353.1806886-CDS-P-canaliculata_contig9921:1959..2058Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9921 1960..2058 +
1693495242.0885465-CDS-P-canaliculata_contig9921:1959..20581693495242.0885465-CDS-P-canaliculata_contig9921:1959..2058Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9921 1960..2058 +
1622817353.1913314-CDS-P-canaliculata_contig9921:2276..23961622817353.1913314-CDS-P-canaliculata_contig9921:2276..2396Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9921 2277..2396 +
1693495242.1025758-CDS-P-canaliculata_contig9921:2276..23961693495242.1025758-CDS-P-canaliculata_contig9921:2276..2396Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9921 2277..2396 +
1622817353.2028565-CDS-P-canaliculata_contig9921:2687..28281622817353.2028565-CDS-P-canaliculata_contig9921:2687..2828Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9921 2688..2828 +
1693495242.1142364-CDS-P-canaliculata_contig9921:2687..28281693495242.1142364-CDS-P-canaliculata_contig9921:2687..2828Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9921 2688..2828 +
1622817353.2140179-CDS-P-canaliculata_contig9921:3083..31791622817353.2140179-CDS-P-canaliculata_contig9921:3083..3179Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9921 3084..3179 +
1693495242.1282666-CDS-P-canaliculata_contig9921:3083..31791693495242.1282666-CDS-P-canaliculata_contig9921:3083..3179Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9921 3084..3179 +
1622817353.2240078-CDS-P-canaliculata_contig9921:3429..35041622817353.2240078-CDS-P-canaliculata_contig9921:3429..3504Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9921 3430..3504 +
1693495242.1388996-CDS-P-canaliculata_contig9921:3429..35041693495242.1388996-CDS-P-canaliculata_contig9921:3429..3504Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9921 3430..3504 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig9921.24039.1

>prot_P-canaliculata_contig9921.24039.1 ID=prot_P-canaliculata_contig9921.24039.1|Name=mRNA_P-canaliculata_contig9921.24039.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=311bp
MYLRSRVFPNLSLGARRTAMVVAVATLLTFCCWILILSPWSGTSTPQILF
GDDDPASDAAEWTYRRTATDGGEPYGPSDWFQGYPDCGGIAQSPINLAAS
THTIVESTQFDLQFSPHTCASEDLFFIANERVWEVVFEGCAQQASLSFNG
ETYNLVQIHIHSPSEHAIGGSLRAAEIHWVHVKAVTEDKLLVVGVLFDVS
EYGTNVELQPLWDVLDSGADSTSASFETRIYDLIPPNKVFSHYMGSLTTP
PCTEGVTWIVMNEPTVISKMQLDEFRVSVAQFDDSKVDEQGNTNRPYQPL
NDRDVFLVKA*
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mRNA from alignment at P-canaliculata_contig9921:67..3686+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig9921.24039.1 ID=mRNA_P-canaliculata_contig9921.24039.1|Name=mRNA_P-canaliculata_contig9921.24039.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=3620bp|location=Sequence derived from alignment at P-canaliculata_contig9921:67..3686+ (Pelvetia canaliculata dioecious)
ACAGCAGTACTCACAGCCCAAACATAAACAAGAACCATTTCTTATATATT GTAAGAATTGGGTATACTACTAATAGCAGACGTCCCCGCTTTGCTCGGAG AAGAAATACCACAGACCTCAGGAGGAGATTGCAAGACACCTCAATTAAAA TACCTCCCAACCGAGTAGTTATATCACCCCCTTCACTATAGAGCCTATCA GGTGTGAGCATATCAACTTATGCTATACAGCACGACATGTTGCCTCTCGC TCTCAAATTAATCTGAAGACGGTCGCAAGATTGTCTCTGCATGTGGCTTG CTCGATGTGGACCTTAGCCCGTCTTAGATCGCCGGTAATGTTTTTTCGCG AACCCCCCCTTCTTCTCCCTCCCGTGTGATGTACTTGCGGTCCCGTGTGT TTCCCAATCTTTCTCTCGGCGCACGGCGCACGGCGATGGTGGTGGCGGTT GCGACTCTCCTGACGTTCTGTTGCTGGATCCTTATTTTATCACCATGGTC GGGAACATCCACTCCGCAGATATTATTTGGTGACGACGATCGTGAGTGTT TGACAGGTTTTTACGTTGGGTGGTTTGGCGGATCTGCGCCCAGATGAAAA TTACGACGATACACACTCGTTTCTGCTTCGGGAGCGGCCCGACGAACGAT CTGTCGATTGAAACTGAAGACGTCCTCTCTTCCTTTACCCACCATGTACC ACCATATGTTTCTAAATGAAGCTGCCTCGGATGCTGCTGAGTGGACCTAC CGCCGAACAGCTACAGACGGGGGCGAGCCTTACGGACCCAGGTACGGCCT TCCTTGCAGTATTTACCCAACCCACGAGAGCAGTACCATAGAAGGAACCG TTCGTTTTATAGTAAAACTAACAGAGACTACGGCGTCGTGATGCCATATG AGTGTACATCAATCTGCTTTAATCGAGTCGAGGGTTGCTCTTCCGTGGGT AAGGACATGCTGTAGACGCTGTATTCGTGTGTTCGTCCCACGTGCGAGTC GTACTTTAAAGTGTCAAGAGACTGCCGTATTATGTAGTGTAGGTGTGCAC TTGACCTGACGTATCAACCGCACGTACGCTGTCCGCAGCGACTGGTTCCA GGGCTACCCGGACTGTGGTGGCATTGCTCAGAGCCCCATCAACCTCGCAG CTAGCACGCACACGATAGTAGAGGTGAGAAAGATCATGCCCCATTTCAAC TTCCCGTGAACAAATGCACACCGACCGACTGCACCTTCGCCAGGGATAGA TGATGGCCTCGTCGTAGGCAGAAACAAAGCTAACTTCCTTTCCTTGACCT TCCCTATGGCTTGTCTCCGATACTGGTGCGTACGAACTTACATCCGAGTG CAGTCGACCCAGTTCGACCTCCAGTTCTCCCCTCACACGTGTGCGTCGGA AGACCTGTTCTTCATCGCCAACGAGCGCGTTTGGGAGGTGAGGGGGAAAT TCCAAACTACTCCAGTGTAGAGTCATTACAGCAGCGTCGCTTTTGATGGA GTGTGGTTAGGAAACAACCCAGATATATACTTATATATTGTTTTTCAGGT GGTGGGGCATCATCCGCACGGTATCAACCTGCCTAGAGCTTTACTTCAAC GTTATCCCTTCGAAACAGAGTCTACGATTCCCCCTGTCTGCGTCGAGCGG AACATGCGACCTCTTGAGTGCTCAAATTACGTTACCGCCAGCGTGATTTC TACGGCTTCTCCATACAGGAAAGCTCTAGAAGACAAAACACACAGATTAA TCGTTAAGCGATTCGGAGAACAAAAACGCTACCGTTGAGCAATGACCGTT TGAGTGTGTTGTGTAACGTGTGACACTACGAGGGACGCATTAACAATGCC TTCTATTCTTCTGCTCGGACGAAACATGCTGATTCCGACGCAGGTCGTTT TCGAGGGATGTGCGCAGCAGGCCTCTCTAAGCTTCAACGGCGAAACTTAC AATCTGGTTCAGATCCATATCCATTCCCCCTCTGAGCACGCGGTGAGAAA ACAGATCGACATTGGGGCAAGTGTTTTGCGCAAAGATACACGCGCCGTGT CTGGCTCTGACGAAGTGCACCGGTGGAGCCATGTCTCTGAAGCACAGATC TTGTCGCGCGCTCGAAAACCCGGATTTCCATATGCCCACAACGCATTATC CCCTCTCTCATGACGATGGCTCTACACTGTCGTTTTCTCCGCGATTCTCT TCCATGGCAGATTGGAGGGTCCCTTCGCGCGGCCGAGATACACTGGGTGC ACGTCAAGGCAGTGACGGAGGACAAACTTCTTGTGGTTGGTGTACTCTTT GACGTCAGCGAGTACGGTACCAACGTTGAGGTCCGTCCGCATGCCAGAGA AGCTTGTCGTGTGTCACCGTCCTTCCCCGCGTGCTTAGCACAGTCTGAGC TGTCGAATGCGGTCGCCGGATGTCTGCCTTTCTGGCCGAGACACGGTCTG CACGTAAAAAGGATTCGTTTCGACGATCGCTCTAGCCCGTCGTTTCGATA TTTTATGAAAAACCTTTGTTGTGCTGTGTTTAATGCACATTATTATTTAC ATCAAAGTCCCGTTTTTCGGCTTTCGGATCTTCTATCTCCATGTCCTACC AATGCGCACACGATACTGCAGCTTCAGCCTCTTTGGGACGTTCTGGACAG CGGTGCGGACTCCACAAGCGCATCGTTCGAAACACGGATTTACGACCTGA TTCCACCCAACAAAGTGTTTTCGCACTACATGGGATCTCTAACAACGCCC CCCTGCACGGAGGTGAGCGCGGTAGAAATGACGATCGGACAGGCTTCGTT GCTCGTGTCCGTTTTTTGGGCCCGTTTTTGTTGTACGGTACTGAGCACAT TTCCCTTTGCGTCGCAGAAGCTTACATGCGTTTGGTGTTCCTGGGGGTTG TGTGTAGCATACATCCATCAATGTATGCTTTTCCCACGAACGCATACATG TGAATCAGCCAGAAAAACTCTAGTTTCTAACCTGTGCCTCGCGACCGATC GCCATTGAACGCCACAGGGCGTCACGTGGATCGTCATGAACGAGCCTACA GTAATTAGCAAGATGCAGCTGGACGAGTTTCGCGTATCGGTCGCGCAGTT CGACGACTCCAAGGTGCATTTGAAAATGGGGAGAGCGATAATGTTATTAT GCTTTAGATATATATATACCTAACGTTTTGGGGGTTCAGCAAAGGTGTTA CCTGTTCTATGAGGTGTAGCCTGTAACGCCCCGCCGTACTCGATGAGAAC CAGTTCTTTTGTGTTGACCATATCTCGTGTTGGGGTTGGATATTAACTAC CAGGCGCACATCTCTAATCCACGCCCTCCCCTCCCTTCGCTTGAACGTTA CGGCCACGATAAGGTCGACGAGCAAGGCAACACCAACCGTCCATACCAGC CACTGAATGACCGTGACGTCTTCCTCGTGAAGGCCTAGAAAGTACCCCCT GCACGCTCTGGAACTTGAGCGATTCGTCCCTGGCAGCCTCATTGAGGTAG AAATGTTTGGACGGAGGTTTGTGCCGGTGACCTAGAGAAGGGATCGCCAT CGGTGTGAAGTGCTTATTGTGTCGTTACTGTACGAAATACTCGGAGTAAA AAGCTACGCCTTTGGCGTTG
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Coding sequence (CDS) from alignment at P-canaliculata_contig9921:67..3686+

>mRNA_P-canaliculata_contig9921.24039.1 ID=mRNA_P-canaliculata_contig9921.24039.1|Name=mRNA_P-canaliculata_contig9921.24039.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1866bp|location=Sequence derived from alignment at P-canaliculata_contig9921:67..3686+ (Pelvetia canaliculata dioecious)
ATGTACTTGCGGTCCCGTGTGTTTCCCAATCTTTCTCTCGGCGCACGGCG
CACGGCGATGGTGGTGGCGGTTGCGACTCTCCTGACGTTCTGTTGCTGGA
TCCTTATTTTATCACCATGGTCGGGAACATCCACTCCGCAGATATTATTT
GGTGACGACGATCATGTACTTGCGGTCCCGTGTGTTTCCCAATCTTTCTC
TCGGCGCACGGCGCACGGCGATGGTGGTGGCGGTTGCGACTCTCCTGACG
TTCTGTTGCTGGATCCTTATTTTATCACCATGGTCGGGAACATCCACTCC
GCAGATATTATTTGGTGACGACGATCCTGCCTCGGATGCTGCTGAGTGGA
CCTACCGCCGAACAGCTACAGACGGGGGCGAGCCTTACGGACCCAGCTGC
CTCGGATGCTGCTGAGTGGACCTACCGCCGAACAGCTACAGACGGGGGCG
AGCCTTACGGACCCAGCGACTGGTTCCAGGGCTACCCGGACTGTGGTGGC
ATTGCTCAGAGCCCCATCAACCTCGCAGCTAGCACGCACACGATAGTAGA
GCGACTGGTTCCAGGGCTACCCGGACTGTGGTGGCATTGCTCAGAGCCCC
ATCAACCTCGCAGCTAGCACGCACACGATAGTAGAGTCGACCCAGTTCGA
CCTCCAGTTCTCCCCTCACACGTGTGCGTCGGAAGACCTGTTCTTCATCG
CCAACGAGCGCGTTTGGGAGTCGACCCAGTTCGACCTCCAGTTCTCCCCT
CACACGTGTGCGTCGGAAGACCTGTTCTTCATCGCCAACGAGCGCGTTTG
GGAGGTCGTTTTCGAGGGATGTGCGCAGCAGGCCTCTCTAAGCTTCAACG
GCGAAACTTACAATCTGGTTCAGATCCATATCCATTCCCCCTCTGAGCAC
GCGGTCGTTTTCGAGGGATGTGCGCAGCAGGCCTCTCTAAGCTTCAACGG
CGAAACTTACAATCTGGTTCAGATCCATATCCATTCCCCCTCTGAGCACG
CGATTGGAGGGTCCCTTCGCGCGGCCGAGATACACTGGGTGCACGTCAAG
GCAGTGACGGAGGACAAACTTCTTGTGGTTGGTGTACTCTTTGACGTCAG
CGAGTACGGTACCAACGTTGAGATTGGAGGGTCCCTTCGCGCGGCCGAGA
TACACTGGGTGCACGTCAAGGCAGTGACGGAGGACAAACTTCTTGTGGTT
GGTGTACTCTTTGACGTCAGCGAGTACGGTACCAACGTTGAGCTTCAGCC
TCTTTGGGACGTTCTGGACAGCGGTGCGGACTCCACAAGCGCATCGTTCG
AAACACGGATTTACGACCTGATTCCACCCAACAAAGTGTTTTCGCACTAC
ATGGGATCTCTAACAACGCCCCCCTGCACGGAGCTTCAGCCTCTTTGGGA
CGTTCTGGACAGCGGTGCGGACTCCACAAGCGCATCGTTCGAAACACGGA
TTTACGACCTGATTCCACCCAACAAAGTGTTTTCGCACTACATGGGATCT
CTAACAACGCCCCCCTGCACGGAGGGCGTCACGTGGATCGTCATGAACGA
GCCTACAGTAATTAGCAAGATGCAGCTGGACGAGTTTCGCGTATCGGTCG
CGCAGTTCGACGACTCCAAGGGCGTCACGTGGATCGTCATGAACGAGCCT
ACAGTAATTAGCAAGATGCAGCTGGACGAGTTTCGCGTATCGGTCGCGCA
GTTCGACGACTCCAAGGTCGACGAGCAAGGCAACACCAACCGTCCATACC
AGCCACTGAATGACCGTGACGTCTTCCTCGTGAAGGCCTAGGTCGACGAG
CAAGGCAACACCAACCGTCCATACCAGCCACTGAATGACCGTGACGTCTT
CCTCGTGAAGGCCTAG
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