mRNA_P-canaliculata_contig9921.24039.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig9921.24039.1 vs. uniprot
Match: F6MHT6_SACJA (Carbonic anhydrase n=1 Tax=Saccharina japonica TaxID=88149 RepID=F6MHT6_SACJA) HSP 1 Score: 360 bits (925), Expect = 2.430e-119 Identity = 171/258 (66.28%), Postives = 206/258 (79.84%), Query Frame = 1 Query: 529 GDDDPASDAAEWTYRRTATDGGEPYGPSDWFQGYPDCGGIAQSPINLAASTHTIVESTQFDLQFSPHTCASEDLFFIANERVWEVVFEGCAQQASLSFNGETYNLVQIHIHSPSEHAIGGSLRAAEIHWVHVKAVTEDKLLVVGVLFDVSEYGTNVELQPLWDVLDSGADSTSASFETRIYDLIPPNKVFSHYMGSLTTPPCTEGVTWIVMNEPTVISKMQLDEFRVSVAQFDDSKVDEQGNTNRPYQPLNDRDVFLV 1302
G +PA AAEWTYRRT+T+G +PYGPSDW +GYPDCG AQSPI+LAA T+V+ + ++L+F P+ C S++L F A+ERVWE++F GC+ + F GE YNL+QIHIHSPSEH IGGS +AEIHWVHVK TED+LLVVGVLFD ++YG+NVE++ LWDVLD G +T F TRIYD++P N VFSHYMGSLTTPPCTEGV WIVM++P +SKMQLDEFR SVA FDDSKVDE GNTNRP Q LNDR +F V
Sbjct: 33 GGGEPA--AAEWTYRRTSTNGQQPYGPSDWHKGYPDCGKKAQSPIDLAADLETVVKGSAYELKFYPNECKSDELLFQADERVWEILFGGCSDVPHVEFKGERYNLLQIHIHSPSEHMIGGSEHSAEIHWVHVKEGTEDQLLVVGVLFDTTDYGSNVEIEHLWDVLDIGETTTKEVFTTRIYDIMPSNPVFSHYMGSLTTPPCTEGVKWIVMSDPVTMSKMQLDEFRTSVALFDDSKVDEHGNTNRPGQSLNDRKIFFV 288
BLAST of mRNA_P-canaliculata_contig9921.24039.1 vs. uniprot
Match: D8LB10_ECTSI (Carbonic anhydrase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB10_ECTSI) HSP 1 Score: 274 bits (700), Expect = 2.170e-85 Identity = 136/256 (53.12%), Postives = 166/256 (64.84%), Query Frame = 1 Query: 535 DDPASDAAEWTYRRTATDGGEPYGPSDWFQGYPDCGGIAQSPINLAASTHTIVESTQFDLQFSPHTCASEDLFFIANERVWEVVFEGCAQQASLSFNGETYNLVQIHIHSPSEHAIGGSLRAAEIHWVHVKAVTEDKLLVVGVLFDVSEYGTNVELQPLWDVLDSGADSTSASFETRIYDLIPPNKVFSHYMGSLTTPPCTEGVTWIVMNEPTVISKMQLDEFRVSVAQFDDSKVDEQGNTNRPYQPLNDRDVFLV 1302
DD A AAEWTYR T G EPYGP DW+ GYPDC G Q+PIN+AA + + F P C S +L F ++ VW+V F GC L + GETYNL+Q HIHSPSEH +GG+ AAEIH VH+K T D LLVVG++F+VS+YG NVEL+P+W+V+D D F Y L+P F+ Y GSLTTPPCTEGV WI+M+EP +S QLD +R +VA + SKV E G TNRP Q LN RDV V
Sbjct: 40 DDEA--AAEWTYRATGVVGEEPYGPDDWYLGYPDCAGTKQTPINIAADVMGTATMQEQAIAFFPSECNSTELVFKSDFAVWQVDFSGCTDAPYLQYQGETYNLLQFHIHSPSEHVLGGAEHAAEIHLVHLKQNTTDGLLVVGIMFEVSDYGQNVELEPMWNVMDLNQDIAEEQFMAAAYSLLPATPSFTTYSGSLTTPPCTEGVRWILMSEPNYMSTWQLDNYRRAVALHEGSKVSEVGATNRPIQELNGRDVLYV 293
BLAST of mRNA_P-canaliculata_contig9921.24039.1 vs. uniprot
Match: A0A872YNN4_SACJA (Carbonic anhydrase n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A872YNN4_SACJA) HSP 1 Score: 273 bits (699), Expect = 3.060e-85 Identity = 139/260 (53.46%), Postives = 179/260 (68.85%), Query Frame = 1 Query: 532 DDDPASDAAEWTYRRTATDGGEPYGPSDWFQGYPDCGGIAQSPINLAASTHTIVESTQFDLQFSPHTCASEDLFFIANERVWEVVFEGCAQQASLSFNGETYNLVQIHIHSPSEHAIGGSLRAAEIHWVHVKAV---TEDKLLVVGVLFDVSEYGTNVELQPLWDVLDSGADSTSASFETRIYDLIPPNKVFSHYMGSLTTPPCTEGVTWIVMNEPTVISKMQLDEFRVSVAQFDDSKVDEQGNTNRPYQPLNDRDVFLV 1302
D+ S +WTYRR + +G PY PSDW GYPDCGG +QSPINL+A+ T+VE+T+F+L+ CAS++L F AN VWE+ F C ++LSF+G Y+L+Q+HIHSPSEH + GSL AEIH VH + TE +LLV+GV D E+G NV L+PLWDVL SGA Y+LIP + +SHYMGSLTTPPC+E V W+VM+ PTVI +QLD FR SVA +S+VDE+ NTNRP Q +N R V++V
Sbjct: 39 DEPEESSFPDWTYRRASHEGERPYSPSDWEIGYPDCGGDSQSPINLSANVGTLVEATEFNLELFGAECASKELDFEANGHVWEIDFSECTSTSNLSFDGGKYSLLQMHIHSPSEHMVAGSLHDAEIHLVHSRDDSDGTESELLVIGVFLDAKEHGWNVALEPLWDVLGSGAKPRGV---INPYELIPSDMAYSHYMGSLTTPPCSEIVRWVVMSTPTVIGDLQLDIFRDSVATATNSQVDERSNTNRPGQAINGRAVYIV 295
BLAST of mRNA_P-canaliculata_contig9921.24039.1 vs. uniprot
Match: Q9SMD6_9PHAE (Carbonic anhydrase alpha type (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q9SMD6_9PHAE) HSP 1 Score: 209 bits (532), Expect = 1.900e-62 Identity = 98/141 (69.50%), Postives = 116/141 (82.27%), Query Frame = 1 Query: 880 IGGSLRAAEIHWVHVKAVTEDKLLVVGVLFDVSEYGTNVELQPLWDVLDSGADSTSASFETRIYDLIPPNKVFSHYMGSLTTPPCTEGVTWIVMNEPTVISKMQLDEFRVSVAQFDDSKVDEQGNTNRPYQPLNDRDVFLV 1302
IGGS AEIHWVHVKA T+D+LLV+GVLFD ++YG+NVE++ LWDVLD G +T F TR+YD++P N VFSHYMGSLTTPPCTEGV WIVM++P + KMQLDEFR SVA FD+SKVDE GNTNRP Q LN+RD+F V
Sbjct: 2 IGGSEHEAEIHWVHVKAGTDDQLLVIGVLFDTTQYGSNVEIEHLWDVLDIGKPTTDEVFVTRVYDIMPSNPVFSHYMGSLTTPPCTEGVKWIVMSDPVTMGKMQLDEFRTSVALFDNSKVDEMGNTNRPRQSLNNRDIFFV 142
BLAST of mRNA_P-canaliculata_contig9921.24039.1 vs. uniprot
Match: H6WB77_VAULI (Carbonic anhydrase n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WB77_VAULI) HSP 1 Score: 152 bits (383), Expect = 5.080e-39 Identity = 92/255 (36.08%), Postives = 128/255 (50.20%), Query Frame = 1 Query: 616 WFQGYPDCGGIAQSPINLA---ASTHTIVESTQFDLQFSPHTCASEDLFFIANERVWEVVFEG-CAQQASLSFNGETYNLVQIHIHSPSEHAIGGSLRAAEIHWVHVKAVTEDKLLVVGVLFD-VSEYGTNVELQPLWD-----------------------VLDSGADSTSASFETRIYDLIPPNKVFSHYMGSLTTPPCTEGVTWIVMNEPTVISKMQLDEFRVSVAQFDDSKVDEQGNTNRPYQPLNDRDVF 1296
W YPDC G+ QSPIN+A +T + F C +DL + A+ + W V F+G C +++ NG +NL+Q H+HS SEH IGG AEIH+VH A+ L VVGV+ S+ N+E W+ V + + S SA + Y ++P + + +Y+GSLTTPPC+E VTWIVM E +S QL+ FR + + VD GN RP QP N R V+
Sbjct: 2 WGALYPDCLGVRQSPINIARDIVTTDCTLAPVTGAFVFDMGACMLDDLDYKADGKGWTVTFDGYCQTTPTITINGAVFNLLQFHLHSVSEHVIGGGYYDAEIHFVHYSALDPTSLAVVGVMISSTSDNVGNLEFAKYWEHMAYVSGKQQYASEIVEKSTATMVSATASSSMSAMEQVNPYSMLPADGTYYNYLGSLTTPPCSETVTWIVMKEGITVSPDQLEAFRAGLMDPEFPLVDNYGNNARPPQPTNGRMVY 256
BLAST of mRNA_P-canaliculata_contig9921.24039.1 vs. uniprot
Match: H6WB76_VAULI (Carbonic anhydrase n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WB76_VAULI) HSP 1 Score: 145 bits (366), Expect = 9.960e-36 Identity = 94/263 (35.74%), Postives = 130/263 (49.43%), Query Frame = 1 Query: 607 PSDWFQGYPDCGGIAQSPINLA---ASTHTIVESTQFDLQFSPHTCASEDLFFIANERVWEVVFEG-CAQQASLSFNGETYNLVQIHIHSPSEHAIGGSLRAAEIHWVHVKAVTEDKLLVVGVLFD-VSEYGTNVELQPLWDVL--------------------------DSGADSTSASFETRI--YDLIPPNKVFSHYMGSLTTPPCTEGVTWIVMNEPTVISKMQLDEFRVSVAQFDDSKVDEQGNTNRPYQPLNDRDVF 1296
P W YPDC G+ QSPIN+A +T + F C +DL + A+ + W V F+G C +++ NG +NL+Q H+HS SEH IGG AEIH+VH A+ L VVGV+ S+ N+E + + S A STS S ++ Y ++P + + +Y+GSLTTPPC+E VTWIVM E +S QL+ FR + + VD GN RP QP N R V+
Sbjct: 75 PDMWGYLYPDCLGVRQSPINIARDIVTTDCTLAPVTGAFVFDMGMCMLDDLDYKADGKGWTVTFDGYCQTTPTITINGAVFNLLQFHLHSVSEHVIGGGYYDAEIHFVHYSALDPTSLAVVGVMISSTSDNIGNLEFTKYAEHMAYVSGKQKYASEIMETDATMAPAATPSSMASSTSMSAMEQVNPYSMLPADGTYYNYLGSLTTPPCSETVTWIVMKEGITVSPDQLEAFRAGLMDPEFPLVDNYGNNARPPQPTNGRMVY 337
BLAST of mRNA_P-canaliculata_contig9921.24039.1 vs. uniprot
Match: A0A450XNX8_9GAMM (Carbonic anhydrase n=1 Tax=Candidatus Kentron sp. MB TaxID=2138164 RepID=A0A450XNX8_9GAMM) HSP 1 Score: 128 bits (322), Expect = 1.940e-30 Identity = 83/237 (35.02%), Postives = 124/237 (52.32%), Query Frame = 1 Query: 601 YGPSDWFQGYPDCG-GIAQSPINLAASTHTIVESTQFDLQFSPHTCASEDLFFIANERVWEVVFEGCAQQASLSFNGETYNLVQIHIHSPSEHAIGGSLRAAEIHWVHVKAVTEDKLLVVGVLFDVSEYGTNVELQPLWDVLDSGADSTSASFET-RIYDLIPPNKVFSHYMGSLTTPPCTEGVTWIVMNEPTVISKMQLDEFRVSVAQFDDSKVDEQGNTNRPYQPLNDRDVFLVK 1305
+GP W + CG G QSPI++ T T S D+Q+ P + + N + F G ++ L +G+ Y L+Q+H H+PSEH IGG L + E+H VH A + +L V+G++ + E N ++ +W+ + + S ET + L+P +K F +YMGSLTTPPC+EGV W VM P S+ Q+ +F + G +NRP QPLN R +F K
Sbjct: 38 HGPEHWGKVSAVCGSGKTQSPIDIKGQTKTGAPS--LDMQYHP----VPSINVLNNGHTIKGSFGG--EKNRLLVDGKPYKLLQLHFHTPSEHQIGGKLASMELHLVHQNA--DKELAVIGIM--IEEGKENKAIKGIWEKMPKKVAKETESHETFNVASLLPKDKTFFYYMGSLTTPPCSEGVRWFVMKTPIHFSEEQIRKFHRII-----------GVSNRPLQPLNGRTIFQGK 251
BLAST of mRNA_P-canaliculata_contig9921.24039.1 vs. uniprot
Match: A0A836C9F5_9STRA (Alpha carbonic anhydrase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9F5_9STRA) HSP 1 Score: 131 bits (329), Expect = 2.030e-30 Identity = 91/289 (31.49%), Postives = 138/289 (47.75%), Query Frame = 1 Query: 502 GTSTPQIL--FGDDDPASDAAEWTYRRTATDGGE--PYGPSDWFQG--YPDCGGIAQSPINLAASTHTIVESTQ-------FDLQFSPHTCASEDLFFIANERVWEVVFEGC--AQQASLSFNG----ETYNLVQIHIHSPSEHAIGGSLRAAEIHWVHVKAVTEDKLLVVGVLFDVSEYGTNVELQPLWDVLDS------GADSTSASFETRIYDLIPPNKVFSHYMGSLTTPPCTEGVTWIVMNEPTVISKMQLDEFRVSVAQFDDSKVDEQGNTNRPYQPLNDRDV 1293
GTS P + DDP A +WTY G P+DW + Y C G QSPI++ ST + + F Q +C L + + E+ +E C + + L ++G +Y L Q+H+H+ SEH++ G AAE+H VH+ +LV+ VL DV+E E+ W +++ G + + + Y L+P +K + Y GSLT PPCTE VT++++ E T ++ QL FR S +D+ G+ RP QPLN R V
Sbjct: 64 GTSDPAAICTLNPDDPT--ALDWTYNPVCYGDGSYTVLAPADWHKNEDYAACAGPRQSPIDIVTSTLNDLGCSSDNEYLPAFSWQLQSGSCPFSQLV-PSTKHALELSYEECDDSTRPGLQYSGALGHSSYKLKQVHLHAGSEHSVDGQFGAAELHLVHINEADSTDILVLAVLLDVAETSEEPEVYKYWTLMNEAVANYQGESAIDMNAISDPYALLPESKQYYTYQGSLTIPPCTETVTFVILAERTQVADAQLQAFRQSQTIAFGPTLDQSGSNARPLQPLNGRSV 349
BLAST of mRNA_P-canaliculata_contig9921.24039.1 vs. uniprot
Match: A0A7S3XPW5_HETAK (Carbonic anhydrase (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XPW5_HETAK) HSP 1 Score: 125 bits (315), Expect = 2.630e-29 Identity = 87/278 (31.29%), Postives = 135/278 (48.56%), Query Frame = 1 Query: 355 PPSSPSRVMYLRSRVFPNLSLGARRTAMVVAVATLLTFCCWILILSPWSGTSTPQILFGDDDPASDAAEWTYRRTATDGGEPYG--PSDWFQGYPDCGGIAQSPINLAASTHTIVESTQFDLQFSPHTCASEDLFFIANERVWEVVFEGCAQQASLSFNGETYNLVQIHIHSPSEHAIGGSLRAAEIHWVHVKAVTEDKLLVVGVLFDVSEYGTNVELQPLW-----DVLDSGADSTSASFETRIYDLIPPNKVFSHYMGSLTTPPCTEGVTWIVMNE 1167
PP P ++ +++ +L G R+ V A A L C + TS ++ D + + DG Y P +W + DC G QSPIN+ + + + LQ + + + L+ + N W+V C + ++NG Y LVQ H HSPSE+ IGG AE+H VH A + LLV+GV+FDV +YG N + W DV ++ + +S +++P + + H+ GSLTTPPC+EGVTWI+M++
Sbjct: 5 PP--PRLIILIQASPTASLIKGGRKMNKVFAFALLAAHACMVQA----GFTSYKYWVYNQADSIAAGTD------CGDGDTQYACSPENWGEVNRDCEGENQSPINVVMAQKS---KSLSQLQLNKNNEDCDLLYLVDNYHTWKVDMSECDGSYTTTWNGVDYELVQFHFHSPSENTIGGGYFDAEMHLVHADA--DSNLLVIGVMFDVVDYGGNNFFKEFWNNTWSDVSTGDSEVSLSSTLDPYTEILPADLSYYHWNGSLTTPPCSEGVTWILMSQ 265
BLAST of mRNA_P-canaliculata_contig9921.24039.1 vs. uniprot
Match: A0A835YV18_9STRA (Alpha carbonic anhydrase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV18_9STRA) HSP 1 Score: 131 bits (330), Expect = 4.380e-29 Identity = 92/287 (32.06%), Postives = 138/287 (48.08%), Query Frame = 1 Query: 505 TSTPQIL--FGDDDPASDAAEWTYRRTATDGGE--PYGPSDWFQG--YPDCGGIAQSPINLAASTHTIVESTQ------FDLQFSPHTCASEDLFFIANERVWEVVFEGC--AQQASLSFNG----ETYNLVQIHIHSPSEHAIGGSLRAAEIHWVHVKAVTEDKLLVVGVLFDVSEYGTNVELQPLWDVLDS------GADSTSASFETRIYDLIPPNKVFSHYMGSLTTPPCTEGVTWIVMNEPTVISKMQLDEFRVSVAQFDDSKVDEQGNTNRPYQPLNDRDV 1293
TS P + DDP A +WTY G P+DW + Y C G QSPI++ ST S+ F Q +C L + + E+ +EGC + + L ++G +Y L Q+H+H+ SEH++ G AAE+H VH+ +LV+ VL DV+E E+ W +++ G + + + Y L+P +K + Y GSLT PPCTE VT++++ E T ++ QL FR S +D+ G+ RP QPLN R V
Sbjct: 369 TSDPAAICTLNPDDPT--ALDWTYNPVCYGDGSYTVLAPADWHKNEEYAACAGPRQSPIDIVTSTLEDRCSSDNEYLPAFSWQLQSGSCPFSQLV-PSTKHALELSYEGCDDSTRPGLQYSGALGHSSYKLKQVHLHAGSEHSVDGEFGAAELHLVHINEADSTDILVLAVLLDVAETSEEPEVYKYWTLMNEAVANYQGESAIDMNAISDPYALLPESKQYYTYQGSLTIPPCTETVTFVILAERTQVADAQLQAFRQSQTIAFGPTLDQSGSNARPLQPLNGRSV 652 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9921.24039.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig9921.24039.1 >prot_P-canaliculata_contig9921.24039.1 ID=prot_P-canaliculata_contig9921.24039.1|Name=mRNA_P-canaliculata_contig9921.24039.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=311bp MYLRSRVFPNLSLGARRTAMVVAVATLLTFCCWILILSPWSGTSTPQILFback to top mRNA from alignment at P-canaliculata_contig9921:67..3686+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig9921.24039.1 ID=mRNA_P-canaliculata_contig9921.24039.1|Name=mRNA_P-canaliculata_contig9921.24039.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=3620bp|location=Sequence derived from alignment at P-canaliculata_contig9921:67..3686+ (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig9921:67..3686+ >mRNA_P-canaliculata_contig9921.24039.1 ID=mRNA_P-canaliculata_contig9921.24039.1|Name=mRNA_P-canaliculata_contig9921.24039.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1866bp|location=Sequence derived from alignment at P-canaliculata_contig9921:67..3686+ (Pelvetia canaliculata dioecious)back to top |