mRNA_P-canaliculata_contig99203.24038.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig99203.24038.1
Unique NamemRNA_P-canaliculata_contig99203.24038.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig99203.24038.1 vs. uniprot
Match: A0A848FSM6_9BACT (Tetratricopeptide repeat protein n=1 Tax=Pseudoflavitalea sp. G-6-1-2 TaxID=2728841 RepID=A0A848FSM6_9BACT)

HSP 1 Score: 70.5 bits (171), Expect = 6.780e-10
Identity = 64/219 (29.22%), Postives = 96/219 (43.84%), Query Frame = 1 
Query:    1 RVERYLSAGNGSAALTAARELLACDPERGDFHTVALRAAVAAGEHDAAADHLIHAKRLDGENPSVHYLDAYHHLEQHRLHKAETAVLKALSLDPEDADTWTLYGWICLERGDAPAALRCGEKARALDALDIE---ADRVVIEARRRMGDGMDRLGQRTLTELRKALSLDPENALLHEDVGDVFLELEDEPLLAEASYREALRLAPTARRVQTKLLTAIR 648
            R E  LS G  + A+    E+L  DP+      +  RA       DA  +    A  ++      HYL A+ H  Q +   A++A+ +A+ L+P  A+ + L+  + LE+     AL    +  ALDA  I    A    +   RR  D +D         +R AL  DPEN+  H  VG   LE +     A   +REALRL P A   +  L  +++
Sbjct:   10 RAELLLSQGRAAEAIKQLTEVLRQDPQNTHALGLMARARFDQKNFDAGIELAHRAISIEPNESYFHYLLAFGHYLQDKNVDAQSAISRAIQLNPYQAEYFGLWSLLLLEKNQFEQALEKANEGLALDAESISCLNARATALNKLRRTDDAID--------TMRAALDQDPENSFTHTTVGWNLLE-KGRQKEATKHFREALRLNPNAEAARAGLKQSLK 219
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig99203.24038.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A848FSM6_9BACT6.780e-1029.22Tetratricopeptide repeat protein n=1 Tax=Pseudofla... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig99203contigP-canaliculata_contig99203:1..960 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score78.2
Seed ortholog evalue7.9e-12
Seed eggNOG ortholog452637.Oter_1428
EggNOG free text desc.Tetratricopeptide repeats
EggNOG OGs46T1Z@74201,COG0457@1,COG0457@2
COG Functional cat.S
Best tax levelVerrucomicrobia
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size960
Cds size960
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817353.088601-CDS-P-canaliculata_contig99203:0..9601622817353.088601-CDS-P-canaliculata_contig99203:0..960Pelvetia canaliculata dioeciousCDSP-canaliculata_contig99203 1..960 +
1693495242.0074987-CDS-P-canaliculata_contig99203:0..9601693495242.0074987-CDS-P-canaliculata_contig99203:0..960Pelvetia canaliculata dioeciousCDSP-canaliculata_contig99203 1..960 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig99203.24038.1prot_P-canaliculata_contig99203.24038.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig99203 1..960 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig99203.24038.1

>prot_P-canaliculata_contig99203.24038.1 ID=prot_P-canaliculata_contig99203.24038.1|Name=mRNA_P-canaliculata_contig99203.24038.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=320bp
RVERYLSAGNGSAALTAARELLACDPERGDFHTVALRAAVAAGEHDAAAD
HLIHAKRLDGENPSVHYLDAYHHLEQHRLHKAETAVLKALSLDPEDADTW
TLYGWICLERGDAPAALRCGEKARALDALDIEADRVVIEARRRMGDGMDR
LGQRTLTELRKALSLDPENALLHEDVGDVFLELEDEPLLAEASYREALRL
APTARRVQTKLLTAIRKRSRVLYALYAPWRGLKKWFAEMADPESESIPIL
AFISAAIGLLGWAIFVYPIIKAYEFFTAAEVWSEASGLKRNSPEGRRFSF
HTLPSAARMSLFALTIVAVW
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mRNA from alignment at P-canaliculata_contig99203:1..960+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig99203.24038.1 ID=mRNA_P-canaliculata_contig99203.24038.1|Name=mRNA_P-canaliculata_contig99203.24038.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=960bp|location=Sequence derived from alignment at P-canaliculata_contig99203:1..960+ (Pelvetia canaliculata dioecious)
CGCGTCGAGCGCTATTTGAGCGCGGGCAATGGCAGCGCTGCCCTCACCGC
CGCTCGCGAACTCCTCGCGTGCGACCCCGAGCGTGGCGACTTCCATACCG
TCGCGCTGCGCGCTGCCGTAGCCGCCGGCGAGCATGACGCCGCGGCCGAT
CACCTTATTCACGCAAAGCGCCTCGATGGAGAAAACCCTTCCGTCCACTA
CCTCGATGCCTACCACCACCTCGAGCAACACCGGCTCCACAAAGCGGAAA
CAGCCGTCCTCAAAGCGCTCTCCCTCGACCCCGAAGACGCCGATACCTGG
ACTCTCTATGGCTGGATCTGCCTCGAGCGCGGCGATGCGCCCGCCGCCCT
CCGCTGCGGTGAGAAAGCACGCGCCCTCGATGCCCTCGACATCGAAGCCG
ACCGCGTGGTCATCGAAGCCCGCCGCAGGATGGGCGACGGCATGGACCGT
CTCGGGCAGCGCACCCTCACCGAGCTACGAAAAGCCCTCTCCCTCGATCC
CGAAAACGCCCTGCTCCACGAAGACGTGGGCGACGTCTTCCTCGAGCTCG
AAGACGAGCCGCTCCTCGCCGAAGCCAGCTACCGCGAAGCCCTCCGTCTC
GCCCCCACCGCCCGCCGCGTCCAGACTAAACTCCTGACAGCCATACGAAA
ACGCTCCCGCGTCCTCTACGCCCTCTACGCACCCTGGCGCGGCCTCAAAA
AATGGTTCGCCGAAATGGCCGACCCCGAATCCGAGTCCATCCCCATCCTC
GCCTTCATCTCCGCCGCCATCGGCCTCCTCGGCTGGGCGATCTTCGTCTA
CCCTATCATCAAAGCCTACGAATTTTTCACCGCCGCCGAAGTCTGGAGCG
AAGCCTCCGGCCTCAAACGCAATTCTCCTGAAGGTCGCCGCTTCTCCTTT
CACACGCTGCCATCCGCCGCGCGCATGTCACTCTTCGCCCTGACCATTGT
CGCTGTATGG
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Coding sequence (CDS) from alignment at P-canaliculata_contig99203:1..960+

>mRNA_P-canaliculata_contig99203.24038.1 ID=mRNA_P-canaliculata_contig99203.24038.1|Name=mRNA_P-canaliculata_contig99203.24038.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1920bp|location=Sequence derived from alignment at P-canaliculata_contig99203:1..960+ (Pelvetia canaliculata dioecious)
CGCGTCGAGCGCTATTTGAGCGCGGGCAATGGCAGCGCTGCCCTCACCGC
CGCTCGCGAACTCCTCGCGTGCGACCCCGAGCGTGGCGACTTCCATACCG
TCGCGCTGCGCGCTGCCGTAGCCGCCGGCGAGCATGACGCCGCGGCCGAT
CACCTTATTCACGCAAAGCGCCTCGATGGAGAAAACCCTTCCGTCCACTA
CCTCGATGCCTACCACCACCTCGAGCAACACCGGCTCCACAAAGCGGAAA
CAGCCGTCCTCAAAGCGCTCTCCCTCGACCCCGAAGACGCCGATACCTGG
ACTCTCTATGGCTGGATCTGCCTCGAGCGCGGCGATGCGCCCGCCGCCCT
CCGCTGCGGTGAGAAAGCACGCGCCCTCGATGCCCTCGACATCGAAGCCG
ACCGCGTGGTCATCGAAGCCCGCCGCAGGATGGGCGACGGCATGGACCGT
CTCGGGCAGCGCACCCTCACCGAGCTACGAAAAGCCCTCTCCCTCGATCC
CGAAAACGCCCTGCTCCACGAAGACGTGGGCGACGTCTTCCTCGAGCTCG
AAGACGAGCCGCTCCTCGCCGAAGCCAGCTACCGCGAAGCCCTCCGTCTC
GCCCCCACCGCCCGCCGCGTCCAGACTAAACTCCTGACAGCCATACGAAA
ACGCTCCCGCGTCCTCTACGCCCTCTACGCACCCTGGCGCGGCCTCAAAA
AATGGTTCGCCGAAATGGCCGACCCCGAATCCGAGTCCATCCCCATCCTC
GCCTTCATCTCCGCCGCCATCGGCCTCCTCGGCTGGGCGATCTTCGTCTA
CCCTATCATCAAAGCCTACGAATTTTTCACCGCCGCCGAAGTCTGGAGCG
AAGCCTCCGGCCTCAAACGCAATTCTCCTGAAGGTCGCCGCTTCTCCTTT
CACACGCTGCCATCCGCCGCGCGCATGTCACTCTTCGCCCTGACCATTGT
CGCTGTATGGCGCGTCGAGCGCTATTTGAGCGCGGGCAATGGCAGCGCTG
CCCTCACCGCCGCTCGCGAACTCCTCGCGTGCGACCCCGAGCGTGGCGAC
TTCCATACCGTCGCGCTGCGCGCTGCCGTAGCCGCCGGCGAGCATGACGC
CGCGGCCGATCACCTTATTCACGCAAAGCGCCTCGATGGAGAAAACCCTT
CCGTCCACTACCTCGATGCCTACCACCACCTCGAGCAACACCGGCTCCAC
AAAGCGGAAACAGCCGTCCTCAAAGCGCTCTCCCTCGACCCCGAAGACGC
CGATACCTGGACTCTCTATGGCTGGATCTGCCTCGAGCGCGGCGATGCGC
CCGCCGCCCTCCGCTGCGGTGAGAAAGCACGCGCCCTCGATGCCCTCGAC
ATCGAAGCCGACCGCGTGGTCATCGAAGCCCGCCGCAGGATGGGCGACGG
CATGGACCGTCTCGGGCAGCGCACCCTCACCGAGCTACGAAAAGCCCTCT
CCCTCGATCCCGAAAACGCCCTGCTCCACGAAGACGTGGGCGACGTCTTC
CTCGAGCTCGAAGACGAGCCGCTCCTCGCCGAAGCCAGCTACCGCGAAGC
CCTCCGTCTCGCCCCCACCGCCCGCCGCGTCCAGACTAAACTCCTGACAG
CCATACGAAAACGCTCCCGCGTCCTCTACGCCCTCTACGCACCCTGGCGC
GGCCTCAAAAAATGGTTCGCCGAAATGGCCGACCCCGAATCCGAGTCCAT
CCCCATCCTCGCCTTCATCTCCGCCGCCATCGGCCTCCTCGGCTGGGCGA
TCTTCGTCTACCCTATCATCAAAGCCTACGAATTTTTCACCGCCGCCGAA
GTCTGGAGCGAAGCCTCCGGCCTCAAACGCAATTCTCCTGAAGGTCGCCG
CTTCTCCTTTCACACGCTGCCATCCGCCGCGCGCATGTCACTCTTCGCCC
TGACCATTGTCGCTGTATGG
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