mRNA_P-canaliculata_contig99141.24030.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig99141.24030.1
Unique NamemRNA_P-canaliculata_contig99141.24030.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig99141.24030.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig99141contigP-canaliculata_contig99141:125..505 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size381
Cds size381
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817352.515181-CDS-P-canaliculata_contig99141:124..5051622817352.515181-CDS-P-canaliculata_contig99141:124..505Pelvetia canaliculata dioeciousCDSP-canaliculata_contig99141 125..505 -
1693495241.6158235-CDS-P-canaliculata_contig99141:124..5051693495241.6158235-CDS-P-canaliculata_contig99141:124..505Pelvetia canaliculata dioeciousCDSP-canaliculata_contig99141 125..505 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig99141.24030.1prot_P-canaliculata_contig99141.24030.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig99141 125..505 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig99141.24030.1

>prot_P-canaliculata_contig99141.24030.1 ID=prot_P-canaliculata_contig99141.24030.1|Name=mRNA_P-canaliculata_contig99141.24030.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=127bp
GGGGGVGGGGGGGGAAGNAGAGLGGAGGFTGTTGGSVIRSNIRTRLRPAF
SSPVIPPQITEFSFNDSLARQPTAQSLIGRYQVSIQNRKATVTGVVNSQA
DADRLIRQLRLQPGVYGVINQLQVIR*
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mRNA from alignment at P-canaliculata_contig99141:125..505-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig99141.24030.1 ID=mRNA_P-canaliculata_contig99141.24030.1|Name=mRNA_P-canaliculata_contig99141.24030.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=381bp|location=Sequence derived from alignment at P-canaliculata_contig99141:125..505- (Pelvetia canaliculata dioecious)
GGTGGTGGTGGTGGTGTCGGCGGTGGAGGCGGCGGAGGTGGAGCAGCCGG
AAACGCCGGCGCGGGGCTTGGCGGTGCTGGTGGGTTCACGGGAACTACCG
GTGGTTCTGTAATCAGAAGTAACATTCGAACTCGATTGCGACCTGCGTTT
TCCTCGCCGGTCATCCCGCCACAAATCACTGAGTTCAGTTTCAACGACAG
CTTGGCTCGACAACCGACAGCCCAATCTTTAATCGGCCGTTACCAAGTCT
CGATTCAGAACCGAAAAGCGACGGTAACCGGTGTGGTTAACAGCCAGGCA
GACGCGGATAGATTGATTCGACAATTAAGATTGCAACCGGGCGTCTACGG
GGTCATCAACCAGTTGCAAGTGATTAGGTAG
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Coding sequence (CDS) from alignment at P-canaliculata_contig99141:125..505-

>mRNA_P-canaliculata_contig99141.24030.1 ID=mRNA_P-canaliculata_contig99141.24030.1|Name=mRNA_P-canaliculata_contig99141.24030.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=762bp|location=Sequence derived from alignment at P-canaliculata_contig99141:125..505- (Pelvetia canaliculata dioecious)
GGTGGTGGTGGTGGTGTCGGCGGTGGAGGCGGCGGAGGTGGAGCAGCCGG
AAACGCCGGCGCGGGGCTTGGCGGTGCTGGTGGGTTCACGGGAACTACCG
GTGGTTCTGTAATCAGAAGTAACATTCGAACTCGATTGCGACCTGCGTTT
TCCTCGCCGGTCATCCCGCCACAAATCACTGAGTTCAGTTTCAACGACAG
CTTGGCTCGACAACCGACAGCCCAATCTTTAATCGGCCGTTACCAAGTCT
CGATTCAGAACCGAAAAGCGACGGTAACCGGTGTGGTTAACAGCCAGGCA
GACGCGGATAGATTGATTCGACAATTAAGATTGCAACCGGGCGTCTACGG
GGTCATCAACCAGTTGCAAGTGATTAGGTAGGGTGGTGGTGGTGGTGTCG
GCGGTGGAGGCGGCGGAGGTGGAGCAGCCGGAAACGCCGGCGCGGGGCTT
GGCGGTGCTGGTGGGTTCACGGGAACTACCGGTGGTTCTGTAATCAGAAG
TAACATTCGAACTCGATTGCGACCTGCGTTTTCCTCGCCGGTCATCCCGC
CACAAATCACTGAGTTCAGTTTCAACGACAGCTTGGCTCGACAACCGACA
GCCCAATCTTTAATCGGCCGTTACCAAGTCTCGATTCAGAACCGAAAAGC
GACGGTAACCGGTGTGGTTAACAGCCAGGCAGACGCGGATAGATTGATTC
GACAATTAAGATTGCAACCGGGCGTCTACGGGGTCATCAACCAGTTGCAA
GTGATTAGGTAG
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