Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Taxonomic scope | Bacteria |
Seed ortholog score | 64.3 |
Seed ortholog evalue | 6.4e-08 |
Seed eggNOG ortholog | 886293.Sinac_6781 |
EggNOG free text desc. | lyase activity |
EggNOG OGs | 2J4JA@203682,COG1413@1,COG1413@2 |
COG Functional cat. | C |
Best tax level | Planctomycetes |
Best eggNOG OG | NA|NA|NA |
Hectar predicted targeting category | other localisation |
Exons | 1 |
Model size | 522 |
Cds size | 522 |
Stop | 1 |
Start | 0 |
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622817351.6203842-CDS-P-canaliculata_contig99010:296..818 | 1622817351.6203842-CDS-P-canaliculata_contig99010:296..818 | Pelvetia canaliculata dioecious | CDS | P-canaliculata_contig99010 297..818 - |
1693495241.03635-CDS-P-canaliculata_contig99010:296..818 | 1693495241.03635-CDS-P-canaliculata_contig99010:296..818 | Pelvetia canaliculata dioecious | CDS | P-canaliculata_contig99010 297..818 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig99010.24019.1 >prot_P-canaliculata_contig99010.24019.1 ID=prot_P-canaliculata_contig99010.24019.1|Name=mRNA_P-canaliculata_contig99010.24019.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=174bp
ALEFLKVRWPRDRHPTLIKLVINCVSSDQKFNREAALKILADRDPDQSFP YIFARVDDTSFTIRSLAYQMLRKVGDRRAIKPLAKRFASDDVDRISSLLR SFGSDSEDAVAKYLSDEDPDIRLKACNLIGKIGTVKSLPALEAMQRRETT MMLLAQTRSSINKIERRNQSQSQ* back to topmRNA from alignment at P-canaliculata_contig99010:297..818- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-canaliculata_contig99010.24019.1 ID=mRNA_P-canaliculata_contig99010.24019.1|Name=mRNA_P-canaliculata_contig99010.24019.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=522bp|location=Sequence derived from alignment at P-canaliculata_contig99010:297..818- (Pelvetia canaliculata dioecious) GCGTTGGAATTTTTAAAGGTTCGCTGGCCAAGAGATCGGCATCCGACGCT
GATTAAATTAGTCATCAATTGTGTTAGCTCTGACCAAAAATTTAATCGTG
AGGCGGCTTTGAAAATTCTCGCTGACCGTGACCCTGATCAAAGCTTTCCT
TACATCTTTGCTCGTGTCGATGACACGTCCTTTACCATTCGAAGTTTGGC
TTATCAGATGCTTCGTAAGGTAGGCGATCGACGTGCAATTAAACCTTTGG
CAAAACGGTTCGCCTCAGATGATGTCGATCGCATTTCAAGTTTGCTACGT
TCGTTCGGCTCAGACAGTGAAGATGCTGTCGCCAAATACTTATCGGATGA
GGATCCTGATATTCGGCTCAAAGCCTGTAACCTCATCGGGAAAATAGGCA
CCGTGAAAAGCTTGCCGGCCCTTGAGGCAATGCAACGACGCGAGACGACG
ATGATGTTGCTGGCTCAGACGCGATCTTCGATCAATAAAATCGAGCGTCG
CAACCAATCGCAAAGTCAATGA back to topCoding sequence (CDS) from alignment at P-canaliculata_contig99010:297..818- >mRNA_P-canaliculata_contig99010.24019.1 ID=mRNA_P-canaliculata_contig99010.24019.1|Name=mRNA_P-canaliculata_contig99010.24019.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1044bp|location=Sequence derived from alignment at P-canaliculata_contig99010:297..818- (Pelvetia canaliculata dioecious) GCGTTGGAATTTTTAAAGGTTCGCTGGCCAAGAGATCGGCATCCGACGCT GATTAAATTAGTCATCAATTGTGTTAGCTCTGACCAAAAATTTAATCGTG AGGCGGCTTTGAAAATTCTCGCTGACCGTGACCCTGATCAAAGCTTTCCT TACATCTTTGCTCGTGTCGATGACACGTCCTTTACCATTCGAAGTTTGGC TTATCAGATGCTTCGTAAGGTAGGCGATCGACGTGCAATTAAACCTTTGG CAAAACGGTTCGCCTCAGATGATGTCGATCGCATTTCAAGTTTGCTACGT TCGTTCGGCTCAGACAGTGAAGATGCTGTCGCCAAATACTTATCGGATGA GGATCCTGATATTCGGCTCAAAGCCTGTAACCTCATCGGGAAAATAGGCA CCGTGAAAAGCTTGCCGGCCCTTGAGGCAATGCAACGACGCGAGACGACG ATGATGTTGCTGGCTCAGACGCGATCTTCGATCAATAAAATCGAGCGTCG CAACCAATCGCAAAGTCAATGAGCGTTGGAATTTTTAAAGGTTCGCTGGC CAAGAGATCGGCATCCGACGCTGATTAAATTAGTCATCAATTGTGTTAGC TCTGACCAAAAATTTAATCGTGAGGCGGCTTTGAAAATTCTCGCTGACCG TGACCCTGATCAAAGCTTTCCTTACATCTTTGCTCGTGTCGATGACACGT CCTTTACCATTCGAAGTTTGGCTTATCAGATGCTTCGTAAGGTAGGCGAT CGACGTGCAATTAAACCTTTGGCAAAACGGTTCGCCTCAGATGATGTCGA TCGCATTTCAAGTTTGCTACGTTCGTTCGGCTCAGACAGTGAAGATGCTG TCGCCAAATACTTATCGGATGAGGATCCTGATATTCGGCTCAAAGCCTGT AACCTCATCGGGAAAATAGGCACCGTGAAAAGCTTGCCGGCCCTTGAGGC AATGCAACGACGCGAGACGACGATGATGTTGCTGGCTCAGACGCGATCTT CGATCAATAAAATCGAGCGTCGCAACCAATCGCAAAGTCAATGA back to top
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